Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4171
Gene name
Locationscaffold_328:21899..22475
Strand-
Gene length (bp)576
Transcript length (bp)576
Coding sequence length (bp)573
Protein length (aa) 191

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q7M515|RNA1_ASPPL Guanyl-specific ribonuclease Ap1 OS=Aspergillus pallidus PE=1 SV=1 71 189 1.0E-06
sp|P00652|RNC2_ASPCL Guanyl-specific ribonuclease C2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ACLA_055300 PE=1 SV=2 71 163 2.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4171
MRFAALFTLASAFLSGFVNALPAESEGQLQSLSAELTELAAGLRLKVGRRPQKSSSCPRTDNGPGRVYPQHTYTD
NQITKAFMGGAQLAAAGKQIGDSESSSALQLDSLVTPGNSDRYPHVFGNKEKVKFPCGKNTMEFPIQIDNNVYGG
GSVANVPDRVVFEYKKTKREFIVEYCGVMRHGPRDFILCPQ
Coding >Ophio5|4171
ATGCGTTTCGCTGCCCTCTTCACTCTAGCTTCGGCTTTCCTTAGCGGCTTTGTTAATGCCCTGCCAGCCGAAAGC
GAGGGGCAGCTTCAGAGCCTGAGCGCCGAGCTCACCGAACTCGCAGCTGGACTGCGACTGAAGGTGGGCAGGCGG
CCGCAGAAGTCCAGCTCGTGCCCGCGCACCGACAACGGGCCTGGCAGGGTATATCCCCAGCATACCTACACCGAT
AATCAGATCACCAAAGCCTTCATGGGCGGTGCTCAGCTTGCTGCTGCTGGAAAGCAGATTGGTGACAGTGAGTCT
TCTTCTGCACTGCAGCTTGACAGTTTGGTAACGCCTGGAAACTCAGATCGTTACCCGCACGTCTTCGGAAACAAG
GAGAAAGTCAAGTTCCCATGCGGCAAGAACACGATGGAGTTCCCCATCCAAATAGACAATAACGTATACGGTGGT
GGGTCTGTGGCTAACGTGCCCGACCGTGTTGTCTTTGAGTATAAGAAGACGAAGAGGGAGTTTATTGTCGAATAT
TGTGGCGTGATGCGTCACGGCCCCAGGGATTTCATACTATGCCCGCAG
Transcript >Ophio5|4171
ATGCGTTTCGCTGCCCTCTTCACTCTAGCTTCGGCTTTCCTTAGCGGCTTTGTTAATGCCCTGCCAGCCGAAAGC
GAGGGGCAGCTTCAGAGCCTGAGCGCCGAGCTCACCGAACTCGCAGCTGGACTGCGACTGAAGGTGGGCAGGCGG
CCGCAGAAGTCCAGCTCGTGCCCGCGCACCGACAACGGGCCTGGCAGGGTATATCCCCAGCATACCTACACCGAT
AATCAGATCACCAAAGCCTTCATGGGCGGTGCTCAGCTTGCTGCTGCTGGAAAGCAGATTGGTGACAGTGAGTCT
TCTTCTGCACTGCAGCTTGACAGTTTGGTAACGCCTGGAAACTCAGATCGTTACCCGCACGTCTTCGGAAACAAG
GAGAAAGTCAAGTTCCCATGCGGCAAGAACACGATGGAGTTCCCCATCCAAATAGACAATAACGTATACGGTGGT
GGGTCTGTGGCTAACGTGCCCGACCGTGTTGTCTTTGAGTATAAGAAGACGAAGAGGGAGTTTATTGTCGAATAT
TGTGGCGTGATGCGTCACGGCCCCAGGGATTTCATACTATGCCCGCAGTAG
Gene >Ophio5|4171
ATGCGTTTCGCTGCCCTCTTCACTCTAGCTTCGGCTTTCCTTAGCGGCTTTGTTAATGCCCTGCCAGCCGAAAGC
GAGGGGCAGCTTCAGAGCCTGAGCGCCGAGCTCACCGAACTCGCAGCTGGACTGCGACTGAAGGTGGGCAGGCGG
CCGCAGAAGTCCAGCTCGTGCCCGCGCACCGACAACGGGCCTGGCAGGGTATATCCCCAGCATACCTACACCGAT
AATCAGATCACCAAAGCCTTCATGGGCGGTGCTCAGCTTGCTGCTGCTGGAAAGCAGATTGGTGACAGTGAGTCT
TCTTCTGCACTGCAGCTTGACAGTTTGGTAACGCCTGGAAACTCAGATCGTTACCCGCACGTCTTCGGAAACAAG
GAGAAAGTCAAGTTCCCATGCGGCAAGAACACGATGGAGTTCCCCATCCAAATAGACAATAACGTATACGGTGGT
GGGTCTGTGGCTAACGTGCCCGACCGTGTTGTCTTTGAGTATAAGAAGACGAAGAGGGAGTTTATTGTCGAATAT
TGTGGCGTGATGCGTCACGGCCCCAGGGATTTCATACTATGCCCGCAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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