© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4169 |
| Gene name | |
| Location | scaffold_328:16959..17823 |
| Strand | - |
| Gene length (bp) | 864 |
| Transcript length (bp) | 627 |
| Coding sequence length (bp) | 624 |
| Protein length (aa) | 208 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94343|YHMA_SCHPO | Uncharacterized MFS-type transporter C1271.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.10c PE=1 SV=1 | 13 | 193 | 2.0E-18 |
| sp|P53389|HOL1_YEAST | Protein HOL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOL1 PE=1 SV=1 | 19 | 176 | 3.0E-17 |
| sp|O74899|YQEH_SCHPO | Uncharacterized transporter C576.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.17c PE=1 SV=1 | 23 | 167 | 1.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.197 | 0.1015 | 0.1769 | 0.2795 | 0.0533 | 0.0039 | 0.5629 | 0.3665 | 0.3617 | 0.0263 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 63 | 85 | 22 |
| 2 | 105 | 122 | 17 |
| 3 | 129 | 147 | 18 |
| Orthofinder run ID | 4 |
| Orthogroup | 21 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4169 MTKYQADHFSSGGIVLPPPGTVELISQDTSQQFDPEPAAVALMPVPSDDPNDPLNWSRFRKCYHFGLLMAMTMVI FSVLSTQPVFWTQMLEELDITQEDLDNAQAFQLIGLAVGCVFFIPVAKKYGRRPIYIVSTALVTGAAWWSAFMRT SNEIILTNVIMGLAGATNETAVQMSVGIPLTASLEQSYGIPQGDHPYAARCMFHRLIC |
| Coding | >Ophio5|4169 ATGACAAAGTATCAAGCGGACCATTTTTCTTCAGGAGGCATTGTCCTCCCACCACCGGGAACTGTTGAGTTGATC TCTCAGGACACCAGCCAGCAGTTCGATCCAGAACCCGCGGCCGTGGCGTTGATGCCGGTCCCCTCGGACGACCCA AATGATCCCTTGAACTGGTCGCGCTTCCGCAAGTGCTATCACTTTGGTCTTCTGATGGCGATGACCATGGTCATA TTCTCTGTACTATCTACTCAGCCGGTATTTTGGACTCAAATGCTAGAAGAGCTAGATATAACGCAAGAAGACCTC GATAACGCCCAGGCGTTTCAGCTGATCGGGTTGGCGGTGGGATGCGTCTTCTTCATCCCGGTAGCCAAGAAGTAC GGCCGACGTCCGATCTATATCGTCTCAACAGCCCTCGTCACGGGTGCCGCCTGGTGGTCCGCATTTATGCGTACA TCAAACGAGATTATTCTGACCAATGTCATCATGGGCCTTGCCGGTGCCACCAATGAGACGGCTGTTCAGATGAGC GTAGGCATTCCCTTGACTGCATCCCTAGAGCAATCTTATGGCATACCCCAAGGAGATCACCCCTATGCCGCCCGG TGTATGTTTCACAGACTCATATGC |
| Transcript | >Ophio5|4169 ATGACAAAGTATCAAGCGGACCATTTTTCTTCAGGAGGCATTGTCCTCCCACCACCGGGAACTGTTGAGTTGATC TCTCAGGACACCAGCCAGCAGTTCGATCCAGAACCCGCGGCCGTGGCGTTGATGCCGGTCCCCTCGGACGACCCA AATGATCCCTTGAACTGGTCGCGCTTCCGCAAGTGCTATCACTTTGGTCTTCTGATGGCGATGACCATGGTCATA TTCTCTGTACTATCTACTCAGCCGGTATTTTGGACTCAAATGCTAGAAGAGCTAGATATAACGCAAGAAGACCTC GATAACGCCCAGGCGTTTCAGCTGATCGGGTTGGCGGTGGGATGCGTCTTCTTCATCCCGGTAGCCAAGAAGTAC GGCCGACGTCCGATCTATATCGTCTCAACAGCCCTCGTCACGGGTGCCGCCTGGTGGTCCGCATTTATGCGTACA TCAAACGAGATTATTCTGACCAATGTCATCATGGGCCTTGCCGGTGCCACCAATGAGACGGCTGTTCAGATGAGC GTAGGCATTCCCTTGACTGCATCCCTAGAGCAATCTTATGGCATACCCCAAGGAGATCACCCCTATGCCGCCCGG TGTATGTTTCACAGACTCATATGCTAA |
| Gene | >Ophio5|4169 ATGACAAAGTATCAAGCGGACCATTTTTCTTCAGGAGGCATTGTCCTCCCACCACCGGGAACTGTTGAGTTGATC TCTCGTAAGTAGTGCATCTCGTCTTCACTCGCAACGTTTGCTTGGTGCTGGTAGGCAGATGTCAGCTGACCATTG ATGGATCCCTCCAGAGGACACCAGCCAGCAGTTCGATCCAGAACCCGCGGCCGTGGCGTTGATGCCGGTCCCCTC GGACGACCCAAATGATCCCTTGGTCAGTGTAGAAACCACTTCCCCCTCTTTTTTTACACATCAAAAGACTCATCT ACTCAAACGATTCACTAGAACTGGTCGCGCTTCCGCAAGTGCTATCACTTTGGTCTTCTGATGGCGATGACCATG GTCATATTCTCTGTGTGAGTGCATGTTTCCTGACATGAAACGGAATTCCATGATAATGAAGTCTATGGTCTCTCG CCTAACTTAGTGACATATAGACTATCTACTCAGCCGGTATTTTGGACTCAAATGCTAGAAGAGCTAGATATAACG CAAGAAGACCTCGATAACGCCCAGGCGTTTCAGCTGATCGGGTTGGCGGTGGGATGCGTCTTCTTCATCCCGGTA GCCAAGAAGTACGGCCGACGTCCGATCTATATCGTCTCAACAGCCCTCGTCACGGGTGCCGCCTGGTGGTCCGCA TTTATGCGTACATCAAACGAGATTATTCTGACCAATGTCATCATGGGCCTTGCCGGTGCCACCAATGAGACGGCT GTTCAGATGAGCGTAGGCATTCCCTTGACTGCATCCCTAGAGCAATCTTATGGCATACCCCAAGGAGATCACCCC TATGCCGCCCGGTGTATGTTTCACAGACTCATATGCTAA |