© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4166 |
| Gene name | |
| Location | scaffold_328:9794..10480 |
| Strand | + |
| Gene length (bp) | 686 |
| Transcript length (bp) | 516 |
| Coding sequence length (bp) | 513 |
| Protein length (aa) | 171 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05821 | NDUF_B8 | NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) | 3.5E-09 | 55 | 146 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005739 | mitochondrion | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0043226 | organelle | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.0622 | 0.1378 | 0.0139 | 0.0776 | 0.921 | 0.0185 | 0.0734 | 0.0407 | 0.0531 | 0.0049 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 115 | 137 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4902 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4166 MSSLLRQLSRAPTLRNAARRLPTTQRRGFLPPQFSDWKVLEEKYPERKVLSEVEDPEMNGGYINPPRIKRQHRDP YADWWDPQERRNFGEPVHEDNDTLGIFSPYEYTWTTDGPALIMIGSFLAVALTMSGIVYLTYPDRPAYPREFEGG LERELGGPGAVRARMPGDPDP |
| Coding | >Ophio5|4166 ATGTCCTCGCTGCTCCGCCAGCTCTCACGGGCGCCGACCCTGCGAAATGCCGCTCGACGACTGCCGACGACACAG CGCCGCGGCTTTCTGCCGCCGCAGTTTTCGGACTGGAAGGTGCTTGAAGAAAAGTATCCGGAACGTAAGGTGCTG AGTGAAGTCGAGGATCCCGAAATGAACGGCGGCTACATCAATCCGCCACGCATCAAGCGCCAGCACCGCGATCCC TATGCGGACTGGTGGGACCCTCAAGAGCGGCGCAACTTTGGCGAGCCGGTTCACGAGGACAATGACACGCTCGGC ATCTTCTCGCCTTACGAGTACACGTGGACGACGGACGGTCCGGCCCTCATCATGATCGGCTCCTTTCTCGCCGTT GCCTTGACAATGTCTGGGATTGTCTACCTCACATACCCGGATCGGCCTGCATACCCGAGGGAGTTTGAGGGCGGA TTGGAGCGTGAACTGGGCGGCCCCGGAGCTGTGAGGGCTCGAATGCCCGGCGACCCAGATCCT |
| Transcript | >Ophio5|4166 ATGTCCTCGCTGCTCCGCCAGCTCTCACGGGCGCCGACCCTGCGAAATGCCGCTCGACGACTGCCGACGACACAG CGCCGCGGCTTTCTGCCGCCGCAGTTTTCGGACTGGAAGGTGCTTGAAGAAAAGTATCCGGAACGTAAGGTGCTG AGTGAAGTCGAGGATCCCGAAATGAACGGCGGCTACATCAATCCGCCACGCATCAAGCGCCAGCACCGCGATCCC TATGCGGACTGGTGGGACCCTCAAGAGCGGCGCAACTTTGGCGAGCCGGTTCACGAGGACAATGACACGCTCGGC ATCTTCTCGCCTTACGAGTACACGTGGACGACGGACGGTCCGGCCCTCATCATGATCGGCTCCTTTCTCGCCGTT GCCTTGACAATGTCTGGGATTGTCTACCTCACATACCCGGATCGGCCTGCATACCCGAGGGAGTTTGAGGGCGGA TTGGAGCGTGAACTGGGCGGCCCCGGAGCTGTGAGGGCTCGAATGCCCGGCGACCCAGATCCTTAG |
| Gene | >Ophio5|4166 ATGTCCTCGGTACGTCTACGTGATTCTGTCGGTCGCGTAAGCTGCTGACAGCTCGCCCTGTCTAGCTGCTCCGCC AGCTCTCACGGGCGCCGACCCTGCGAAATGCCGCTCGACGACTGCCGACGACACAGCGCCGCGGCTTTCTGCCGC CGCAGTTTTCGGACTGGAAGGTGCTTGAAGAAAAGTATCCGGAACGTAAGGTGCTGAGTGAAGTCGAGGATCCCG AAATGGTCGGTGTCCATTGTCCCGTGAGACGGCTAGCACACACTGACGTACGCCGTGCCAGAACGGCGGCTACAT CAATCCGCCACGCATCAAGCGCCAGCACCGCGATCCCTATGCGGACTGGTGGGACCCTCAAGAGCGGCGCAACTT TGGCGAGCCGGTTCACGAGGACAATGACACGCTCGGCATCTTCTCGCCTTACGAGTACACGTGGACGACGGACGG TCCGGCCCTCATCATGATCGGCTCCTTTCTCGCCGTTGCCTTGACAATGTCTGGGATTGTCTACCTCACATACCC GGATCGGCCTGCATACCCGAGGGAGTTTGAGGGCGGATTGGAGCGTGAACTGGGCGGCCCCGGAGCTGTGAGGGT AGGTCGCCGGCACCGCGGCAGCGACAGATGGGCTAGGGCTAATGACGATGCGGCAGGCTCGAATGCCCGGCGACC CAGATCCTTAG |