Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4166
Gene name
Locationscaffold_328:9794..10480
Strand+
Gene length (bp)686
Transcript length (bp)516
Coding sequence length (bp)513
Protein length (aa) 171

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05821 NDUF_B8 NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) 3.5E-09 55 146

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005739 mitochondrion Yes
GO:0110165 cellular anatomical entity No
GO:0043227 membrane-bounded organelle No
GO:0005575 cellular_component No
GO:0043229 intracellular organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:0043226 organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

Domain # Start End Length
1 115 137 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4166
MSSLLRQLSRAPTLRNAARRLPTTQRRGFLPPQFSDWKVLEEKYPERKVLSEVEDPEMNGGYINPPRIKRQHRDP
YADWWDPQERRNFGEPVHEDNDTLGIFSPYEYTWTTDGPALIMIGSFLAVALTMSGIVYLTYPDRPAYPREFEGG
LERELGGPGAVRARMPGDPDP
Coding >Ophio5|4166
ATGTCCTCGCTGCTCCGCCAGCTCTCACGGGCGCCGACCCTGCGAAATGCCGCTCGACGACTGCCGACGACACAG
CGCCGCGGCTTTCTGCCGCCGCAGTTTTCGGACTGGAAGGTGCTTGAAGAAAAGTATCCGGAACGTAAGGTGCTG
AGTGAAGTCGAGGATCCCGAAATGAACGGCGGCTACATCAATCCGCCACGCATCAAGCGCCAGCACCGCGATCCC
TATGCGGACTGGTGGGACCCTCAAGAGCGGCGCAACTTTGGCGAGCCGGTTCACGAGGACAATGACACGCTCGGC
ATCTTCTCGCCTTACGAGTACACGTGGACGACGGACGGTCCGGCCCTCATCATGATCGGCTCCTTTCTCGCCGTT
GCCTTGACAATGTCTGGGATTGTCTACCTCACATACCCGGATCGGCCTGCATACCCGAGGGAGTTTGAGGGCGGA
TTGGAGCGTGAACTGGGCGGCCCCGGAGCTGTGAGGGCTCGAATGCCCGGCGACCCAGATCCT
Transcript >Ophio5|4166
ATGTCCTCGCTGCTCCGCCAGCTCTCACGGGCGCCGACCCTGCGAAATGCCGCTCGACGACTGCCGACGACACAG
CGCCGCGGCTTTCTGCCGCCGCAGTTTTCGGACTGGAAGGTGCTTGAAGAAAAGTATCCGGAACGTAAGGTGCTG
AGTGAAGTCGAGGATCCCGAAATGAACGGCGGCTACATCAATCCGCCACGCATCAAGCGCCAGCACCGCGATCCC
TATGCGGACTGGTGGGACCCTCAAGAGCGGCGCAACTTTGGCGAGCCGGTTCACGAGGACAATGACACGCTCGGC
ATCTTCTCGCCTTACGAGTACACGTGGACGACGGACGGTCCGGCCCTCATCATGATCGGCTCCTTTCTCGCCGTT
GCCTTGACAATGTCTGGGATTGTCTACCTCACATACCCGGATCGGCCTGCATACCCGAGGGAGTTTGAGGGCGGA
TTGGAGCGTGAACTGGGCGGCCCCGGAGCTGTGAGGGCTCGAATGCCCGGCGACCCAGATCCTTAG
Gene >Ophio5|4166
ATGTCCTCGGTACGTCTACGTGATTCTGTCGGTCGCGTAAGCTGCTGACAGCTCGCCCTGTCTAGCTGCTCCGCC
AGCTCTCACGGGCGCCGACCCTGCGAAATGCCGCTCGACGACTGCCGACGACACAGCGCCGCGGCTTTCTGCCGC
CGCAGTTTTCGGACTGGAAGGTGCTTGAAGAAAAGTATCCGGAACGTAAGGTGCTGAGTGAAGTCGAGGATCCCG
AAATGGTCGGTGTCCATTGTCCCGTGAGACGGCTAGCACACACTGACGTACGCCGTGCCAGAACGGCGGCTACAT
CAATCCGCCACGCATCAAGCGCCAGCACCGCGATCCCTATGCGGACTGGTGGGACCCTCAAGAGCGGCGCAACTT
TGGCGAGCCGGTTCACGAGGACAATGACACGCTCGGCATCTTCTCGCCTTACGAGTACACGTGGACGACGGACGG
TCCGGCCCTCATCATGATCGGCTCCTTTCTCGCCGTTGCCTTGACAATGTCTGGGATTGTCTACCTCACATACCC
GGATCGGCCTGCATACCCGAGGGAGTTTGAGGGCGGATTGGAGCGTGAACTGGGCGGCCCCGGAGCTGTGAGGGT
AGGTCGCCGGCACCGCGGCAGCGACAGATGGGCTAGGGCTAATGACGATGCGGCAGGCTCGAATGCCCGGCGACC
CAGATCCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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