© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4161 |
| Gene name | |
| Location | scaffold_327:18425..19411 |
| Strand | - |
| Gene length (bp) | 986 |
| Transcript length (bp) | 831 |
| Coding sequence length (bp) | 828 |
| Protein length (aa) | 276 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01988 | VIT1 | VIT family | 1.2E-56 | 34 | 249 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6MWE5|VIT11_ORYSJ | Vacuolar iron transporter 1.1 OS=Oryza sativa subsp. japonica GN=VIT1.1 PE=2 SV=1 | 30 | 252 | 2.0E-37 |
| sp|Q6ERE5|VIT12_ORYSJ | Vacuolar iron transporter 1.2 OS=Oryza sativa subsp. japonica GN=VIT1.2 PE=3 SV=2 | 11 | 253 | 1.0E-34 |
| sp|Q9ZUA5|VIT1_ARATH | Vacuolar iron transporter 1 OS=Arabidopsis thaliana GN=VIT1 PE=2 SV=1 | 35 | 252 | 1.0E-32 |
| sp|P47818|CCC1_YEAST | Protein CCC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCC1 PE=1 SV=1 | 32 | 222 | 5.0E-30 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005384 | manganese ion transmembrane transporter activity | Yes |
| GO:0030026 | cellular manganese ion homeostasis | Yes |
| GO:0009987 | cellular process | No |
| GO:0048878 | chemical homeostasis | No |
| GO:0008150 | biological_process | No |
| GO:0055080 | cation homeostasis | No |
| GO:0042592 | homeostatic process | No |
| GO:0006875 | cellular metal ion homeostasis | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0065007 | biological regulation | No |
| GO:0055076 | transition metal ion homeostasis | No |
| GO:0003674 | molecular_function | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0005215 | transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0006873 | cellular ion homeostasis | No |
| GO:0030003 | cellular cation homeostasis | No |
| GO:0019725 | cellular homeostasis | No |
| GO:0055065 | metal ion homeostasis | No |
| GO:0046916 | cellular transition metal ion homeostasis | No |
| GO:0098771 | inorganic ion homeostasis | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0050801 | ion homeostasis | No |
| GO:0055082 | cellular chemical homeostasis | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0055071 | manganese ion homeostasis | No |
| GO:0022857 | transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 61 | 83 | 22 |
| 2 | 166 | 188 | 22 |
| 3 | 192 | 214 | 22 |
| 4 | 226 | 248 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 29.31 | 12.54 | 46.08 |
| CcL | In ants, during behavior modification | 201.24 | 83.06 | 319.42 |
| CcD | In ants, recently dead | 266.06 | 134.30 | 397.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.317341 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4161 MALSSSSPLLRQEDVVREEGEKAGGMNGADTLHHVIIGFSDGVTVPFALTAGLSSLGSSRLVVIGGLADLFSGMI SMGLGAYLAAVTERDRSRLESREEEEEEAAIVALDDQLCHLLCRRYLLSSDVARVWIHELGRNPVGWQRFCRDVL TRTDRRDPSSSSRRPCLAGLTMGASYLVGGLIPMLPYFFVARVGHALLLSVVITLLILLAFGYLKDYLAVRSHRA GCWGALQTLVIGILAAGTSYAIVRALDAAGEPLRLRHAIYRCTSTDSNVRK |
| Coding | >Ophio5|4161 ATGGCCCTCTCATCCTCCTCCCCTCTCCTGCGGCAAGAAGACGTAGTGAGGGAAGAGGGCGAAAAAGCAGGAGGG ATGAACGGCGCCGACACACTACATCACGTCATCATCGGCTTCTCGGACGGGGTCACGGTACCTTTCGCTCTGACG GCCGGCCTCTCCTCTCTCGGTAGCAGCCGGCTCGTCGTCATCGGCGGTCTGGCCGATCTCTTCTCCGGAATGATC AGCATGGGACTCGGCGCTTACCTGGCTGCCGTCACGGAGAGGGATCGCTCTCGGCTGGAGAGTAGGGAGGAGGAG GAGGAGGAGGCGGCGATCGTGGCTCTTGATGACCAGCTTTGTCACCTCTTGTGTCGTCGCTATCTGCTTTCCTCT GACGTCGCTAGGGTCTGGATCCATGAGCTGGGTCGGAATCCTGTTGGTTGGCAACGCTTTTGCCGAGATGTGTTG ACGAGAACGGATCGTCGTGATCCGTCGAGCAGCAGTCGTCGTCCTTGTCTGGCTGGTCTGACCATGGGAGCCAGC TACTTGGTCGGCGGCCTCATTCCCATGCTTCCTTACTTCTTCGTCGCTCGCGTCGGACACGCTCTGCTCCTCTCC GTCGTCATCACCCTCCTCATCCTTCTCGCTTTTGGCTACCTCAAGGATTATCTCGCTGTCCGGAGTCACCGTGCT GGCTGCTGGGGCGCGCTTCAGACGCTGGTCATTGGCATCTTGGCTGCCGGTACGAGCTACGCCATTGTCCGGGCG CTGGATGCGGCCGGCGAGCCTCTTCGGTTGAGACATGCCATCTATAGATGCACATCAACGGATAGCAATGTTCGC AAG |
| Transcript | >Ophio5|4161 ATGGCCCTCTCATCCTCCTCCCCTCTCCTGCGGCAAGAAGACGTAGTGAGGGAAGAGGGCGAAAAAGCAGGAGGG ATGAACGGCGCCGACACACTACATCACGTCATCATCGGCTTCTCGGACGGGGTCACGGTACCTTTCGCTCTGACG GCCGGCCTCTCCTCTCTCGGTAGCAGCCGGCTCGTCGTCATCGGCGGTCTGGCCGATCTCTTCTCCGGAATGATC AGCATGGGACTCGGCGCTTACCTGGCTGCCGTCACGGAGAGGGATCGCTCTCGGCTGGAGAGTAGGGAGGAGGAG GAGGAGGAGGCGGCGATCGTGGCTCTTGATGACCAGCTTTGTCACCTCTTGTGTCGTCGCTATCTGCTTTCCTCT GACGTCGCTAGGGTCTGGATCCATGAGCTGGGTCGGAATCCTGTTGGTTGGCAACGCTTTTGCCGAGATGTGTTG ACGAGAACGGATCGTCGTGATCCGTCGAGCAGCAGTCGTCGTCCTTGTCTGGCTGGTCTGACCATGGGAGCCAGC TACTTGGTCGGCGGCCTCATTCCCATGCTTCCTTACTTCTTCGTCGCTCGCGTCGGACACGCTCTGCTCCTCTCC GTCGTCATCACCCTCCTCATCCTTCTCGCTTTTGGCTACCTCAAGGATTATCTCGCTGTCCGGAGTCACCGTGCT GGCTGCTGGGGCGCGCTTCAGACGCTGGTCATTGGCATCTTGGCTGCCGGTACGAGCTACGCCATTGTCCGGGCG CTGGATGCGGCCGGCGAGCCTCTTCGGTTGAGACATGCCATCTATAGATGCACATCAACGGATAGCAATGTTCGC AAGTAG |
| Gene | >Ophio5|4161 ATGGCCCTCTCATCCTCCTCCCCTCTCCTGCGGCAAGAAGACGTAGTGAGGGAAGAGGGCGAAAAAGCAGGAGGG ATGAACGGCGCCGACACACTACATCACGTCATCATCGGCTTCTCGGACGGGGTCACGGTACCTTTCGCTCTGACG GCCGGCCTCTCCTCTCTCGGTAGCAGCCGGCTCGTCGTCATCGGCGGTCTGGCCGATCTCTTCTCCGGAATGATC AGCATGGGACTCGGCGCTTACCTGGCTGCCGTCACGGAGAGGGATCGCTCTCGGCTGGAGAGTAGGGAGGAGGAG GAGGAGGAGGCGGCGATCGTGGCTCTTGATGACCAGCTTTGTCACCTCTTGTGTCGTCGCTATCTGCTTTCCTCT GACGTCGCTAGGGTCTGGATCCATGAGCTGGGTCGGAATCCTGTTGGTTGGCAACGCTTTTGCCGAGATGTGTTG ACGAGAACGGATCGTCGTGATCCGTCGAGCAGCAGTCGTCGTCCTTGTCTGGCTGGTCTGACCATGGGAGCCAGC TACTTGGTCGGCGGCCTCATTCCCATGCTTCCTTACTTCTTCGTCGCTCGCGTCGGACACGCTCTGCTCCTCTCC GTCGTCATCACCCTCCTCATCCTTCTCGCTTTTGGCTACCTCAAGGATTATCTCGCTGTCCGGAGTCACCGTGCT GGCTGCTGGGGCGCGCTTCAGACGCTGGTCATTGGCATCTTGGCTGCCGGTACGAGCTACGCCATTGTCCGGGCG CTGGATGCGGCCGGCGAGCCGTGAGGTCCGATTTTCCCCCGTCTTCTTTCTGCACATTTACCTCTGTTTCATCTT GTCACGACACCTTATCTTCTTGTGTTGAAAAGTCTTCGGTTGAGACATGGTGAGCAAGGCGTCTGGAGCCGCGAG GCAAATCATGGCTTTCGTCTGAACTATGAGCACGGCGGGAAGCCATCTATAGATGCACATCAACGGATAGCAATG TTCGCAAGTAG |