© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|416 |
| Gene name | |
| Location | scaffold_11:33176..35087 |
| Strand | + |
| Gene length (bp) | 1911 |
| Transcript length (bp) | 1491 |
| Coding sequence length (bp) | 1488 |
| Protein length (aa) | 496 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02535 | Zip | ZIP Zinc transporter | 2.1E-11 | 160 | 268 |
| PF02535 | Zip | ZIP Zinc transporter | 1.9E-14 | 388 | 492 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 152 | 496 | 6.0E-24 |
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 261 | 496 | 2.0E-22 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 264 | 496 | 2.0E-21 |
| sp|O81850|IRT2_ARATH | Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1 | 133 | 496 | 4.0E-17 |
| sp|Q38856|IRT1_ARATH | Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2 | 140 | 496 | 5.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 152 | 496 | 6.0E-24 |
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 261 | 496 | 2.0E-22 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 264 | 496 | 2.0E-21 |
| sp|O81850|IRT2_ARATH | Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1 | 133 | 496 | 4.0E-17 |
| sp|Q38856|IRT1_ARATH | Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2 | 140 | 496 | 5.0E-16 |
| sp|Q9SLG3|ZIP3_ARATH | Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1 | 134 | 496 | 1.0E-12 |
| sp|Q75HB1|IRT1_ORYSJ | Fe(2+) transport protein 1 OS=Oryza sativa subsp. japonica GN=IRT1 PE=2 SV=1 | 146 | 496 | 1.0E-12 |
| sp|Q6L8G1|IRT2_ORYSJ | Fe(2+) transport protein 2 OS=Oryza sativa subsp. japonica GN=IRT2 PE=2 SV=1 | 149 | 496 | 9.0E-12 |
| sp|A3BI11|ZIP8_ORYSJ | Zinc transporter 8 OS=Oryza sativa subsp. japonica GN=ZIP8 PE=2 SV=1 | 271 | 496 | 6.0E-11 |
| sp|Q6L8G0|ZIP5_ORYSJ | Zinc transporter 5 OS=Oryza sativa subsp. japonica GN=ZIP5 PE=2 SV=1 | 148 | 496 | 2.0E-10 |
| sp|Q9FIS2|ZIP12_ARATH | Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=3 SV=1 | 136 | 496 | 5.0E-10 |
| sp|O82643|ZIP9_ARATH | Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1 | 281 | 496 | 1.0E-09 |
| sp|Q8W245|ZIP10_ARATH | Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=1 SV=2 | 138 | 330 | 2.0E-09 |
| sp|Q0DHE3|ZIP9_ORYSJ | Zinc transporter 9 OS=Oryza sativa subsp. japonica GN=ZIP9 PE=3 SV=3 | 391 | 496 | 5.0E-09 |
| sp|O81123|ZIP1_ARATH | Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1 | 161 | 496 | 5.0E-09 |
| sp|O04089|ZIP4_ARATH | Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1 | 397 | 496 | 7.0E-09 |
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 157 | 259 | 2.0E-08 |
| sp|O23039|ZIP5_ARATH | Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1 | 397 | 496 | 2.0E-08 |
| sp|Q8LE59|IRT3_ARATH | Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=3 | 397 | 496 | 3.0E-08 |
| sp|Q8S3W4|ZIP8_ARATH | Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1 | 140 | 330 | 3.0E-08 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 139 | 261 | 9.0E-08 |
| sp|Q8S3W4|ZIP8_ARATH | Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1 | 393 | 496 | 1.0E-07 |
| sp|Q8W245|ZIP10_ARATH | Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=1 SV=2 | 393 | 496 | 7.0E-07 |
| sp|Q5Z653|ZIP10_ORYSJ | Zinc transporter 10 OS=Oryza sativa subsp. japonica GN=ZIP10 PE=3 SV=2 | 397 | 456 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0006812 | cation transport | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 2 | 24 | 22 |
| 2 | 161 | 183 | 22 |
| 3 | 195 | 217 | 22 |
| 4 | 232 | 254 | 22 |
| 5 | 297 | 319 | 22 |
| 6 | 397 | 416 | 19 |
| 7 | 428 | 450 | 22 |
| 8 | 470 | 492 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|416 MLAAFAFAASCGIVAGLTTVPAGLMPRQAPAQTPAPTSTATAGSVEAVTGCSMRGSQLLCVAAGTDFLVHSTPTQ TTALPAQFTGCHHHGTEMFCIAPDGEDVEVGPANEPPGEHQHTTASGHRNCHFHAGVEHCVGGSEEESNQSQSQC AGVKRDYNVGIRVGLLFAILATSALGVFGPILLQRLLPRKLSLAFIILKQFGTGIIISTAFVHLYTHASLMFGNK CLGELGYEATTSAVLMAGMVLSFLVEYVGRRIVAAKVRSSSTRSAEEKASALLSTEVVSILVMEAGILFHSLLIG LTLVVAGDSFFLTLFVVILFHQVFEGLALGTRIATIGTDIPNPITIVDAAGSSPGGEKTRSPSDPSITGEVSAGA PDESAASPGPSVGLSMKKKLGLAALFAFITPIGMAIGIGVLQHFNGNDKSTLIAIGTLDALSAGILVWVGVVEMW AADWMTGSPGHGHVAELAEANLVTVTLSGFALLAGMALMSLLGKWA |
| Coding | >Ophio5|416 ATGCTCGCAGCTTTCGCCTTCGCCGCGAGCTGCGGCATAGTCGCCGGCCTCACCACGGTTCCAGCCGGGCTGATG CCCCGCCAAGCCCCGGCCCAGACTCCGGCGCCGACGTCGACTGCGACAGCCGGGTCCGTTGAGGCCGTGACGGGC TGCTCCATGCGCGGATCGCAGTTGCTTTGTGTCGCTGCTGGAACTGACTTCCTCGTGCATTCGACGCCTACGCAG ACCACGGCTTTGCCTGCGCAATTTACGGGCTGTCATCATCATGGCACCGAAATGTTCTGCATTGCTCCGGACGGA GAGGATGTTGAGGTTGGACCAGCGAATGAGCCTCCCGGCGAGCATCAACACACCACGGCCAGTGGCCATCGGAAC TGTCACTTTCACGCCGGCGTCGAGCATTGCGTCGGCGGCAGCGAGGAAGAGTCGAATCAGTCACAATCGCAGTGT GCTGGCGTCAAGCGCGATTACAACGTCGGCATTCGCGTTGGCCTCCTCTTCGCCATCCTCGCTACCAGCGCTCTC GGCGTCTTCGGGCCTATTTTGCTGCAGAGACTGCTTCCGCGGAAGCTCAGTCTGGCCTTCATCATCCTGAAGCAG TTTGGAACGGGCATCATAATCTCTACTGCCTTTGTACACCTCTATACTCATGCCTCGCTCATGTTCGGCAACAAG TGTCTCGGCGAGCTTGGATATGAGGCCACCACGTCGGCTGTCCTCATGGCTGGCATGGTCTTGTCCTTTCTTGTT GAATACGTCGGTCGACGTATCGTTGCCGCCAAGGTTCGCTCGTCGTCGACTCGGAGCGCGGAGGAAAAGGCCAGC GCGCTGCTGTCTACCGAGGTCGTCAGTATTCTCGTCATGGAGGCCGGCATCCTCTTCCACTCCCTGCTCATCGGC CTCACCCTCGTCGTTGCCGGTGACAGCTTTTTCCTCACCCTCTTTGTCGTCATCCTCTTTCACCAGGTCTTTGAA GGTCTCGCCCTCGGCACCCGCATCGCCACCATCGGCACCGACATTCCCAACCCCATCACTATCGTTGACGCTGCA GGCTCCAGCCCCGGCGGCGAAAAGACGCGATCGCCGTCCGACCCGTCCATCACCGGCGAAGTCTCCGCCGGCGCC CCCGACGAGTCGGCCGCGTCGCCCGGGCCTAGCGTCGGCTTGTCGATGAAGAAGAAGCTCGGGCTCGCCGCGCTC TTTGCCTTCATCACCCCCATTGGCATGGCCATCGGCATCGGCGTTTTGCAGCATTTCAATGGCAACGACAAGTCA ACCCTGATTGCTATCGGCACCCTCGATGCCTTGTCCGCCGGCATCCTCGTCTGGGTTGGCGTCGTCGAGATGTGG GCTGCCGACTGGATGACCGGCAGCCCTGGTCATGGCCATGTGGCGGAGCTGGCTGAAGCCAATCTTGTCACTGTC ACCCTCTCTGGCTTCGCTCTTTTGGCGGGCATGGCGCTCATGAGCTTGCTTGGGAAGTGGGCT |
| Transcript | >Ophio5|416 ATGCTCGCAGCTTTCGCCTTCGCCGCGAGCTGCGGCATAGTCGCCGGCCTCACCACGGTTCCAGCCGGGCTGATG CCCCGCCAAGCCCCGGCCCAGACTCCGGCGCCGACGTCGACTGCGACAGCCGGGTCCGTTGAGGCCGTGACGGGC TGCTCCATGCGCGGATCGCAGTTGCTTTGTGTCGCTGCTGGAACTGACTTCCTCGTGCATTCGACGCCTACGCAG ACCACGGCTTTGCCTGCGCAATTTACGGGCTGTCATCATCATGGCACCGAAATGTTCTGCATTGCTCCGGACGGA GAGGATGTTGAGGTTGGACCAGCGAATGAGCCTCCCGGCGAGCATCAACACACCACGGCCAGTGGCCATCGGAAC TGTCACTTTCACGCCGGCGTCGAGCATTGCGTCGGCGGCAGCGAGGAAGAGTCGAATCAGTCACAATCGCAGTGT GCTGGCGTCAAGCGCGATTACAACGTCGGCATTCGCGTTGGCCTCCTCTTCGCCATCCTCGCTACCAGCGCTCTC GGCGTCTTCGGGCCTATTTTGCTGCAGAGACTGCTTCCGCGGAAGCTCAGTCTGGCCTTCATCATCCTGAAGCAG TTTGGAACGGGCATCATAATCTCTACTGCCTTTGTACACCTCTATACTCATGCCTCGCTCATGTTCGGCAACAAG TGTCTCGGCGAGCTTGGATATGAGGCCACCACGTCGGCTGTCCTCATGGCTGGCATGGTCTTGTCCTTTCTTGTT GAATACGTCGGTCGACGTATCGTTGCCGCCAAGGTTCGCTCGTCGTCGACTCGGAGCGCGGAGGAAAAGGCCAGC GCGCTGCTGTCTACCGAGGTCGTCAGTATTCTCGTCATGGAGGCCGGCATCCTCTTCCACTCCCTGCTCATCGGC CTCACCCTCGTCGTTGCCGGTGACAGCTTTTTCCTCACCCTCTTTGTCGTCATCCTCTTTCACCAGGTCTTTGAA GGTCTCGCCCTCGGCACCCGCATCGCCACCATCGGCACCGACATTCCCAACCCCATCACTATCGTTGACGCTGCA GGCTCCAGCCCCGGCGGCGAAAAGACGCGATCGCCGTCCGACCCGTCCATCACCGGCGAAGTCTCCGCCGGCGCC CCCGACGAGTCGGCCGCGTCGCCCGGGCCTAGCGTCGGCTTGTCGATGAAGAAGAAGCTCGGGCTCGCCGCGCTC TTTGCCTTCATCACCCCCATTGGCATGGCCATCGGCATCGGCGTTTTGCAGCATTTCAATGGCAACGACAAGTCA ACCCTGATTGCTATCGGCACCCTCGATGCCTTGTCCGCCGGCATCCTCGTCTGGGTTGGCGTCGTCGAGATGTGG GCTGCCGACTGGATGACCGGCAGCCCTGGTCATGGCCATGTGGCGGAGCTGGCTGAAGCCAATCTTGTCACTGTC ACCCTCTCTGGCTTCGCTCTTTTGGCGGGCATGGCGCTCATGAGCTTGCTTGGGAAGTGGGCTTAG |
| Gene | >Ophio5|416 ATGCTCGCAGCTTTCGCCTTCGCCGCGAGCTGCGGCATAGTCGCCGGCCTCACCACGGTTCCAGCCGGGCTGATG CCCCGCCAAGCCCCGGCCCAGACTCCGGCGCCGACGTCGACTGCGACAGCCGGGTCCGTTGAGGCCGTGACGGGC TGCTCCATGCGCGGATCGCAGTTGTTGGTTCCCCCCACCCTCTCCCCCTTGTTCGATTCGACGCCCCCATGGCCC ATGGGAGACAATAGTTTTTGCTGATACCTCGAGGGGGGGAAAAAAAAAAATAAAGGCTTTGTGTCGCTGCTGGAA CTGACTTCCTCGTGCATTCGACGCCTACGCAGACCACGGCTTTGCCTGCGCAATTTACGGGCTGTCATCATCATG GCACCGAAATGTGAGTCGTGTATTATTGGGCTTGTCGGACGTGGGGGTCTGACTCGGATGCCGAAATGGCTTGCA GGTTCTGCATTGCTCCGGACGGAGAGGATGTTGAGGTTGGACCAGCGAATGAGCCTCCCGGCGAGCATCAACACA CCACGGCCAGTGGCCATCGGAACTGTCACTTTCACGCCGGCGTCGAGTAAGCCTCTTCTGTTGTCCTCTTCGCCT CTAAATCTGATCATCTTTCAGGCATTGCGTCGGCGGCAGCGAGGAAGAGTCGAATCAGTCACAATCGCAGTGTGC TGGCGTCAAGCGCGATTACAACGTCGGCATTCGCGTTGGCCTCCTCTTCGCCATCCTCGCTACCAGCGCTCTCGG TTCGTCGGGTCTGCTGAGATGGCGTTTGAGAAGTCTGCAGGCTGACCCCGTCTTCCTCCTCAGGCGTCTTCGGGC CTATTTTGCTGCAGAGACTGCTTCCGCGGAAGCTCAGTCTGGCCTTCATCATCCTGAAGCAGTTTGGAACGGGCA TCATAATCTCTACTGCCTTTGTACACGTGCGTGTCGTTTGTCTGTTTGATGGAGAAGCGGCTGCGGCTGACAAGC CATGGTCAAATAGCTCTATACTCATGCCTCGCTCATGTTCGGCAACAAGTGTCTCGGCGAGCTTGGATATGAGGC CACCACGTCGGCTGTCCTCATGGCTGGCATGGTCTTGTCCTTTCTTGTTGAATACGTCGGTCGACGTATCGTTGC CGCCAAGGTTCGCTCGTCGTCGACTCGGAGCGCGGAGGAAAAGGCCAGCGCGCTGCTGTCTACCGAGGTCGTCAG TATTCTCGTCATGGAGGCCGGCATCCTCTTCCACTCCCTGCGTTCGTTGCCTCCTCCTTATGCTGGCTATCAATT CTTGAGCTGACACGTCCTCTCTCTCTCTCCCTACAAGTCATCGGCCTCACCCTCGTCGTTGCCGGTGACAGCTTT TTCCTCACCCTCTTTGTCGTCATCCTCTTTCACCAGGTCTTTGAAGGTCTCGCCCTCGGCACCCGCATCGCCACC ATCGGCACCGACATTCCCAACCCCATCACTATCGTTGACGCTGCAGGCTCCAGCCCCGGCGGCGAAAAGACGCGA TCGCCGTCCGACCCGTCCATCACCGGCGAAGTCTCCGCCGGCGCCCCCGACGAGTCGGCCGCGTCGCCCGGGCCT AGCGTCGGCTTGTCGATGAAGAAGAAGCTCGGGCTCGCCGCGCTCTTTGCCTTCATCACCCCCATTGGCATGGCC ATCGGCATCGGCGTTTTGCAGCATTTCAATGGCAACGACAAGTCAACCCTGATTGCTATCGGCACCCTCGATGCC TTGTCCGCCGGCATCCTCGTCTGGGTTGGCGTCGTCGAGATGTGGGCTGCCGACTGGATGACCGGCAGCCCTGGT CATGGCCATGTGGCGGAGCTGGCTGAAGCCAATCTTGTCACTGTCACCCTCTCTGGCTTCGCTCTTTTGGCGGGC ATGGCGCTCATGAGCTTGCTTGGGAAGTGGGCTTAG |