Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|4156
Gene name
Location	scaffold_327:8865..10235
Strand	-
Gene length (bp)	1370
Transcript length (bp)	1140
Coding sequence length (bp)	1137
Protein length (aa)	379

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	2.57	0.39	4.75
CcL	In ants, during behavior modification	2.05	0.13	3.97
CcD	In ants, recently dead	1.16	0.00	2.36

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.656620	no
SC16a	CcD	0.094688	no
CcL	CcD	0.272362	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|4156 MLRCSFFLLLTLLLGSGSLAESNVLLGSGSLAKSNVLLGNGSLAKSNVIHDLCPRGIAMAGDGGDVTRPPPIIPP PPNTLKPNNTAPIQSDNTLPQDNSTLHMDNVNPTGNSTLSLDSQMFSAKNSTSSADNSTSSADNSTSSPTQSGTR LKDNSTVSVEDLEPPATNSTEAEFDPVEYYSDIQPKEEPIRGLDTPDKPLFPPHAARQQYPRLLGVLLREMADSS WRLHNLVLRQENSTTHISALAWQGLADRFPFPPDAPLTIGEYHDALEKQRVAAKQMLVWKQNADVWNGIYVDVFH LIRSYIGILGLALNPISGVKPPMHLLDLPWYTFEALVALVIWDNTMLLNVTWRGQELKPFFRWPRRVYVRQPGVD FGPW
Coding	>Ophio5\|4156 ATGCTGAGGTGCAGCTTTTTCCTGCTTCTGACGCTGCTCTTGGGCAGCGGCAGTCTAGCGGAGTCGAATGTGCTC TTGGGCAGCGGCAGTCTAGCGAAGTCGAATGTGCTCTTGGGCAACGGCAGTCTAGCGAAGTCGAACGTCATCCAT GACCTGTGCCCCCGGGGTATCGCGATGGCGGGTGATGGCGGGGATGTCACCAGGCCTCCCCCCATCATCCCGCCT CCACCGAACACATTGAAGCCGAATAACACTGCGCCAATTCAAAGTGATAATACTCTCCCCCAGGACAACTCGACT CTCCACATGGACAACGTGAATCCCACCGGCAACTCGACTCTGTCCTTGGACAGCCAGATGTTCTCCGCGAAAAAC TCGACTTCCTCGGCGGACAACTCGACTTCCTCGGCGGACAACTCAACTTCTTCCCCGACCCAATCAGGAACTCGC CTCAAGGACAACTCGACTGTTTCCGTCGAAGACTTGGAACCCCCTGCGACCAACTCGACCGAAGCTGAATTCGAC CCGGTCGAATACTACTCAGACATCCAACCCAAGGAGGAACCCATCCGCGGCCTCGACACCCCAGACAAGCCCCTC TTCCCCCCGCACGCAGCCCGACAGCAATACCCCAGACTTCTCGGCGTTCTGCTCCGCGAAATGGCCGACAGCTCA TGGCGTCTGCACAATCTCGTCCTCCGCCAGGAAAACAGCACCACCCACATATCTGCCCTGGCATGGCAGGGCCTC GCCGATAGATTTCCATTCCCCCCCGATGCTCCGTTGACCATTGGTGAATACCACGATGCCCTTGAAAAGCAACGT GTAGCGGCGAAACAGATGCTGGTTTGGAAGCAGAACGCCGACGTATGGAACGGCATCTATGTCGATGTGTTCCAC CTCATCAGGTCCTACATCGGAATACTAGGCCTCGCGCTCAATCCTATTTCCGGCGTTAAACCCCCGATGCACCTG CTCGACCTCCCATGGTACACTTTCGAGGCGCTGGTAGCCCTCGTCATCTGGGACAACACGATGCTGCTCAACGTC ACCTGGCGTGGACAGGAACTGAAACCTTTCTTTCGATGGCCTCGGAGGGTGTATGTCAGACAGCCCGGCGTCGAT TTTGGTCCTTGG
Transcript	>Ophio5\|4156 ATGCTGAGGTGCAGCTTTTTCCTGCTTCTGACGCTGCTCTTGGGCAGCGGCAGTCTAGCGGAGTCGAATGTGCTC TTGGGCAGCGGCAGTCTAGCGAAGTCGAATGTGCTCTTGGGCAACGGCAGTCTAGCGAAGTCGAACGTCATCCAT GACCTGTGCCCCCGGGGTATCGCGATGGCGGGTGATGGCGGGGATGTCACCAGGCCTCCCCCCATCATCCCGCCT CCACCGAACACATTGAAGCCGAATAACACTGCGCCAATTCAAAGTGATAATACTCTCCCCCAGGACAACTCGACT CTCCACATGGACAACGTGAATCCCACCGGCAACTCGACTCTGTCCTTGGACAGCCAGATGTTCTCCGCGAAAAAC TCGACTTCCTCGGCGGACAACTCGACTTCCTCGGCGGACAACTCAACTTCTTCCCCGACCCAATCAGGAACTCGC CTCAAGGACAACTCGACTGTTTCCGTCGAAGACTTGGAACCCCCTGCGACCAACTCGACCGAAGCTGAATTCGAC CCGGTCGAATACTACTCAGACATCCAACCCAAGGAGGAACCCATCCGCGGCCTCGACACCCCAGACAAGCCCCTC TTCCCCCCGCACGCAGCCCGACAGCAATACCCCAGACTTCTCGGCGTTCTGCTCCGCGAAATGGCCGACAGCTCA TGGCGTCTGCACAATCTCGTCCTCCGCCAGGAAAACAGCACCACCCACATATCTGCCCTGGCATGGCAGGGCCTC GCCGATAGATTTCCATTCCCCCCCGATGCTCCGTTGACCATTGGTGAATACCACGATGCCCTTGAAAAGCAACGT GTAGCGGCGAAACAGATGCTGGTTTGGAAGCAGAACGCCGACGTATGGAACGGCATCTATGTCGATGTGTTCCAC CTCATCAGGTCCTACATCGGAATACTAGGCCTCGCGCTCAATCCTATTTCCGGCGTTAAACCCCCGATGCACCTG CTCGACCTCCCATGGTACACTTTCGAGGCGCTGGTAGCCCTCGTCATCTGGGACAACACGATGCTGCTCAACGTC ACCTGGCGTGGACAGGAACTGAAACCTTTCTTTCGATGGCCTCGGAGGGTGTATGTCAGACAGCCCGGCGTCGAT TTTGGTCCTTGGTGA
Gene	>Ophio5\|4156 ATGCTGAGGTGCAGCTTTTTCCTGCTTCTGACGCTGCTCTTGGGCAGCGGCAGTCTAGCGGAGTCGAATGTGCTC TTGGGCAGCGGCAGTCTAGCGAAGTCGAATGTGCTCTTGGGCAACGGCAGTCTAGCGAAGTCGAACGTCATCCAT GACCTGTGCCCCCGGGGTATCGCGATGGCGGGTGATGGCGGGGATGTCACCAGGCCTCCCCCCATCATCCCGCCT CCACCGAACACATTGAAGCCGAATAACACTGCGCCAATTCAAAGTGATAATACTCTCCCCCAGGACAACTCGACT CTCCACATGGACAACGTGAATCCCACCGGCAACTCGACTCTGTCCTTGGACAGCCAGATGTTCTCCGCGAAAAAC TCGACTTCCTCGGCGGACAACTCGACTTCCTCGGCGGACAACTCAACTTCTTCCCCGACCCAATCAGGAACTCGC CTCAAGGACAACTCGACTGTTTCCGTCGAAGACTTGGAACCCCCTGCGACCAACTCGACCGAAGCTGAATTCGAC CCGGTCGAATACTACTCAGACATCCAACCCAAGGAGGAACCCATCCGCGGCCTCGACACCCCAGACAAGCCCCTC TTCCCCCCGCACGCAGCCCGACAGCAATACCCCAGACTTCTCGGCGTTCTGCTCCGCGAAATGGCCGACAGCTCA TGGCGTCTGCACAATCTCGTCCTCCGCCAGGAAAACAGCACCACCCACATATCTGCCGTAAGCCTCCTCCTTTTC CTCTCGTTGAAATGGTTTGAAAATCTTAAAAAAAGAAGAAAAATCAATTAACGCTTGTCTTCCGCGCAGCTGGCA TGGCAGGGCCTCGCCGATAGATTTCCATTCCCCCCCGATGCTCCGTTGACCATTGGTGAATACCACGATGTATGT GTCGTCGCCCCCTCCCCCCCCTTATCGGAAAGGAGACAAGTTAAGGGCAGAACAGGCCCTTGAAAAGCAACGTGT AGCGGCGAAACAGATGCTGGTTTGGAAGCAGAACGCCGACGTATGGAACGGCATCTATGTCGATGTGTTCCACCT CATCAGGTCCTACATCGTACGCAACTCCGGCCCCTTCTTCCTCCCGGCGGGAGGGAGAGAGAGAAGACGAGTGAA GCTGACCACCACCACCTCTACAGGGAATACTAGGCCTCGCGCTCAATCCTATTTCCGGCGTTAAACCCCCGATGC ACCTGCTCGACCTCCCATGGTACACTTTCGAGGCGCTGGTAGCCCTCGTCATCTGGGACAACACGATGCTGCTCA ACGTCACCTGGCGTGGACAGGAACTGAAACCTTTCTTTCGATGGCCTCGGAGGGTGTATGTCAGACAGCCCGGCG TCGATTTTGGTCCTTGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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