Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|4152
Gene name
Location	scaffold_327:24..975
Strand	+
Gene length (bp)	951
Transcript length (bp)	951
Coding sequence length (bp)	948
Protein length (aa)	316

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00561	Abhydrolase_1	alpha/beta hydrolase fold	2.1E-17	22	291
PF12146	Hydrolase_4	Serine aminopeptidase, S33	4.2E-10	24	294
PF12697	Abhydrolase_6	Alpha/beta hydrolase family	1.3E-10	10	296

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|A8IAD8\|RUTD_AZOC5	Putative aminoacrylate hydrolase RutD OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rutD PE=3 SV=1	2	99	1.0E-08
sp\|P00632\|ELH2_ACIAD	3-oxoadipate enol-lactonase 2 OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=catD PE=1 SV=3	7	104	3.0E-08
sp\|C5CN82\|RUTD_VARPS	Putative aminoacrylate hydrolase RutD OS=Variovorax paradoxus (strain S110) GN=rutD PE=3 SV=1	2	100	4.0E-08
sp\|Q59695\|ACOC_PSEPU	Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system OS=Pseudomonas putida GN=acoC PE=3 SV=1	2	101	5.0E-08
sp\|B7KWT4\|RUTD_METC4	Putative aminoacrylate hydrolase RutD OS=Methylobacterium extorquens (strain CM4 / NCIMB 13688) GN=rutD PE=3 SV=1	24	99	7.0E-07

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|A8IAD8\|RUTD_AZOC5	Putative aminoacrylate hydrolase RutD OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rutD PE=3 SV=1	2	99	1.0E-08
sp\|P00632\|ELH2_ACIAD	3-oxoadipate enol-lactonase 2 OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=catD PE=1 SV=3	7	104	3.0E-08
sp\|C5CN82\|RUTD_VARPS	Putative aminoacrylate hydrolase RutD OS=Variovorax paradoxus (strain S110) GN=rutD PE=3 SV=1	2	100	4.0E-08
sp\|Q59695\|ACOC_PSEPU	Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system OS=Pseudomonas putida GN=acoC PE=3 SV=1	2	101	5.0E-08
sp\|B7KWT4\|RUTD_METC4	Putative aminoacrylate hydrolase RutD OS=Methylobacterium extorquens (strain CM4 / NCIMB 13688) GN=rutD PE=3 SV=1	24	99	7.0E-07
sp\|C7CM33\|RUTD_METED	Putative aminoacrylate hydrolase RutD OS=Methylobacterium extorquens (strain DSM 5838 / DM4) GN=rutD PE=3 SV=1	24	99	8.0E-07

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 23	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	14.10	5.17	23.02
CcL	In ants, during behavior modification	21.45	8.47	34.44
CcD	In ants, recently dead	15.20	5.66	24.73

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.182076	no
SC16a	CcD	0.845852	no
CcL	CcD	0.284152	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|4152 MGLAGVMATWQYQTLYFGHERGHRFSVLLLDNRGMGLSDRPLMRYSTSEMARDVMEVLDHVGWRDRRQVHVVGIS LGGMIAQELACLIPQRISSLSLISTAAHLRGGDDDDDDDDDDDEGDASRRQQYTSTLAHAATAITDRLSMLKPRS EEETIFHTSRLVFVPQWLSAPDQGSLPNPDSTPRCQQPATTSREYGRFHSNFQRYQAQELVKRRGPGFSRLGYLC QAVAAVWHWKSHRQLRSMADDVGRKRILVMHGRHDLLIRLRFGLKLIDALEPAVVHVVDGMGHGPCVEREAWFNR TLEENLDKWQGLDDDA
Coding	>Ophio5\|4152 ATGGGCCTTGCTGGTGTCATGGCGACGTGGCAGTATCAAACTCTCTACTTTGGTCACGAGCGCGGTCATCGCTTC TCCGTTCTTCTACTCGATAATCGGGGCATGGGTCTGAGCGATAGGCCTCTGATGCGGTACTCGACCAGTGAGATG GCGCGCGACGTGATGGAGGTCTTGGACCATGTTGGCTGGCGAGACAGACGACAAGTTCACGTTGTTGGCATCTCT CTCGGGGGTATGATTGCGCAGGAGTTGGCGTGTCTGATTCCTCAACGGATATCCTCCCTCAGTCTGATTTCTACC GCCGCTCATCTCCGTGGTGGCGATGACGATGACGACGACGACGACGACGACGACGAGGGAGATGCAAGTCGTCGT CAGCAGTATACCTCGACACTGGCCCACGCAGCGACAGCTATAACGGACCGTCTCAGCATGCTGAAGCCAAGAAGC GAGGAAGAGACCATTTTCCATACATCCCGTCTCGTCTTCGTCCCCCAATGGCTCTCCGCTCCGGACCAAGGCTCC CTCCCCAACCCAGACTCAACACCACGATGCCAACAGCCAGCGACGACCAGTCGCGAATACGGTCGCTTCCACTCC AACTTTCAGCGCTATCAGGCTCAGGAGCTGGTCAAGCGTCGCGGACCCGGCTTCTCCCGTTTGGGTTACTTGTGT CAGGCTGTTGCCGCCGTATGGCATTGGAAGTCGCATCGTCAGTTGAGGTCCATGGCTGATGACGTCGGTCGGAAA AGGATCTTGGTCATGCATGGCCGTCATGATTTGCTTATTCGCCTCCGCTTCGGTCTTAAGCTCATCGACGCCCTT GAGCCTGCTGTCGTCCATGTCGTCGATGGTATGGGTCATGGGCCTTGTGTTGAGAGGGAGGCTTGGTTTAACCGC ACGCTGGAGGAGAATCTGGACAAGTGGCAGGGGCTTGATGACGATGCC
Transcript	>Ophio5\|4152 ATGGGCCTTGCTGGTGTCATGGCGACGTGGCAGTATCAAACTCTCTACTTTGGTCACGAGCGCGGTCATCGCTTC TCCGTTCTTCTACTCGATAATCGGGGCATGGGTCTGAGCGATAGGCCTCTGATGCGGTACTCGACCAGTGAGATG GCGCGCGACGTGATGGAGGTCTTGGACCATGTTGGCTGGCGAGACAGACGACAAGTTCACGTTGTTGGCATCTCT CTCGGGGGTATGATTGCGCAGGAGTTGGCGTGTCTGATTCCTCAACGGATATCCTCCCTCAGTCTGATTTCTACC GCCGCTCATCTCCGTGGTGGCGATGACGATGACGACGACGACGACGACGACGACGAGGGAGATGCAAGTCGTCGT CAGCAGTATACCTCGACACTGGCCCACGCAGCGACAGCTATAACGGACCGTCTCAGCATGCTGAAGCCAAGAAGC GAGGAAGAGACCATTTTCCATACATCCCGTCTCGTCTTCGTCCCCCAATGGCTCTCCGCTCCGGACCAAGGCTCC CTCCCCAACCCAGACTCAACACCACGATGCCAACAGCCAGCGACGACCAGTCGCGAATACGGTCGCTTCCACTCC AACTTTCAGCGCTATCAGGCTCAGGAGCTGGTCAAGCGTCGCGGACCCGGCTTCTCCCGTTTGGGTTACTTGTGT CAGGCTGTTGCCGCCGTATGGCATTGGAAGTCGCATCGTCAGTTGAGGTCCATGGCTGATGACGTCGGTCGGAAA AGGATCTTGGTCATGCATGGCCGTCATGATTTGCTTATTCGCCTCCGCTTCGGTCTTAAGCTCATCGACGCCCTT GAGCCTGCTGTCGTCCATGTCGTCGATGGTATGGGTCATGGGCCTTGTGTTGAGAGGGAGGCTTGGTTTAACCGC ACGCTGGAGGAGAATCTGGACAAGTGGCAGGGGCTTGATGACGATGCCTGA
Gene	>Ophio5\|4152 ATGGGCCTTGCTGGTGTCATGGCGACGTGGCAGTATCAAACTCTCTACTTTGGTCACGAGCGCGGTCATCGCTTC TCCGTTCTTCTACTCGATAATCGGGGCATGGGTCTGAGCGATAGGCCTCTGATGCGGTACTCGACCAGTGAGATG GCGCGCGACGTGATGGAGGTCTTGGACCATGTTGGCTGGCGAGACAGACGACAAGTTCACGTTGTTGGCATCTCT CTCGGGGGTATGATTGCGCAGGAGTTGGCGTGTCTGATTCCTCAACGGATATCCTCCCTCAGTCTGATTTCTACC GCCGCTCATCTCCGTGGTGGCGATGACGATGACGACGACGACGACGACGACGACGAGGGAGATGCAAGTCGTCGT CAGCAGTATACCTCGACACTGGCCCACGCAGCGACAGCTATAACGGACCGTCTCAGCATGCTGAAGCCAAGAAGC GAGGAAGAGACCATTTTCCATACATCCCGTCTCGTCTTCGTCCCCCAATGGCTCTCCGCTCCGGACCAAGGCTCC CTCCCCAACCCAGACTCAACACCACGATGCCAACAGCCAGCGACGACCAGTCGCGAATACGGTCGCTTCCACTCC AACTTTCAGCGCTATCAGGCTCAGGAGCTGGTCAAGCGTCGCGGACCCGGCTTCTCCCGTTTGGGTTACTTGTGT CAGGCTGTTGCCGCCGTATGGCATTGGAAGTCGCATCGTCAGTTGAGGTCCATGGCTGATGACGTCGGTCGGAAA AGGATCTTGGTCATGCATGGCCGTCATGATTTGCTTATTCGCCTCCGCTTCGGTCTTAAGCTCATCGACGCCCTT GAGCCTGCTGTCGTCCATGTCGTCGATGGTATGGGTCATGGGCCTTGTGTTGAGAGGGAGGCTTGGTTTAACCGC ACGCTGGAGGAGAATCTGGACAAGTGGCAGGGGCTTGATGACGATGCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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