Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4152
Gene name
Locationscaffold_327:24..975
Strand+
Gene length (bp)951
Transcript length (bp)951
Coding sequence length (bp)948
Protein length (aa) 316

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00561 Abhydrolase_1 alpha/beta hydrolase fold 2.1E-17 22 291
PF12146 Hydrolase_4 Serine aminopeptidase, S33 4.2E-10 24 294
PF12697 Abhydrolase_6 Alpha/beta hydrolase family 1.3E-10 10 296

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|A8IAD8|RUTD_AZOC5 Putative aminoacrylate hydrolase RutD OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rutD PE=3 SV=1 2 99 1.0E-08
sp|P00632|ELH2_ACIAD 3-oxoadipate enol-lactonase 2 OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=catD PE=1 SV=3 7 104 3.0E-08
sp|C5CN82|RUTD_VARPS Putative aminoacrylate hydrolase RutD OS=Variovorax paradoxus (strain S110) GN=rutD PE=3 SV=1 2 100 4.0E-08
sp|Q59695|ACOC_PSEPU Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system OS=Pseudomonas putida GN=acoC PE=3 SV=1 2 101 5.0E-08
sp|B7KWT4|RUTD_METC4 Putative aminoacrylate hydrolase RutD OS=Methylobacterium extorquens (strain CM4 / NCIMB 13688) GN=rutD PE=3 SV=1 24 99 7.0E-07
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|A8IAD8|RUTD_AZOC5 Putative aminoacrylate hydrolase RutD OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rutD PE=3 SV=1 2 99 1.0E-08
sp|P00632|ELH2_ACIAD 3-oxoadipate enol-lactonase 2 OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=catD PE=1 SV=3 7 104 3.0E-08
sp|C5CN82|RUTD_VARPS Putative aminoacrylate hydrolase RutD OS=Variovorax paradoxus (strain S110) GN=rutD PE=3 SV=1 2 100 4.0E-08
sp|Q59695|ACOC_PSEPU Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system OS=Pseudomonas putida GN=acoC PE=3 SV=1 2 101 5.0E-08
sp|B7KWT4|RUTD_METC4 Putative aminoacrylate hydrolase RutD OS=Methylobacterium extorquens (strain CM4 / NCIMB 13688) GN=rutD PE=3 SV=1 24 99 7.0E-07
sp|C7CM33|RUTD_METED Putative aminoacrylate hydrolase RutD OS=Methylobacterium extorquens (strain DSM 5838 / DM4) GN=rutD PE=3 SV=1 24 99 8.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4152
MGLAGVMATWQYQTLYFGHERGHRFSVLLLDNRGMGLSDRPLMRYSTSEMARDVMEVLDHVGWRDRRQVHVVGIS
LGGMIAQELACLIPQRISSLSLISTAAHLRGGDDDDDDDDDDDEGDASRRQQYTSTLAHAATAITDRLSMLKPRS
EEETIFHTSRLVFVPQWLSAPDQGSLPNPDSTPRCQQPATTSREYGRFHSNFQRYQAQELVKRRGPGFSRLGYLC
QAVAAVWHWKSHRQLRSMADDVGRKRILVMHGRHDLLIRLRFGLKLIDALEPAVVHVVDGMGHGPCVEREAWFNR
TLEENLDKWQGLDDDA
Coding >Ophio5|4152
ATGGGCCTTGCTGGTGTCATGGCGACGTGGCAGTATCAAACTCTCTACTTTGGTCACGAGCGCGGTCATCGCTTC
TCCGTTCTTCTACTCGATAATCGGGGCATGGGTCTGAGCGATAGGCCTCTGATGCGGTACTCGACCAGTGAGATG
GCGCGCGACGTGATGGAGGTCTTGGACCATGTTGGCTGGCGAGACAGACGACAAGTTCACGTTGTTGGCATCTCT
CTCGGGGGTATGATTGCGCAGGAGTTGGCGTGTCTGATTCCTCAACGGATATCCTCCCTCAGTCTGATTTCTACC
GCCGCTCATCTCCGTGGTGGCGATGACGATGACGACGACGACGACGACGACGACGAGGGAGATGCAAGTCGTCGT
CAGCAGTATACCTCGACACTGGCCCACGCAGCGACAGCTATAACGGACCGTCTCAGCATGCTGAAGCCAAGAAGC
GAGGAAGAGACCATTTTCCATACATCCCGTCTCGTCTTCGTCCCCCAATGGCTCTCCGCTCCGGACCAAGGCTCC
CTCCCCAACCCAGACTCAACACCACGATGCCAACAGCCAGCGACGACCAGTCGCGAATACGGTCGCTTCCACTCC
AACTTTCAGCGCTATCAGGCTCAGGAGCTGGTCAAGCGTCGCGGACCCGGCTTCTCCCGTTTGGGTTACTTGTGT
CAGGCTGTTGCCGCCGTATGGCATTGGAAGTCGCATCGTCAGTTGAGGTCCATGGCTGATGACGTCGGTCGGAAA
AGGATCTTGGTCATGCATGGCCGTCATGATTTGCTTATTCGCCTCCGCTTCGGTCTTAAGCTCATCGACGCCCTT
GAGCCTGCTGTCGTCCATGTCGTCGATGGTATGGGTCATGGGCCTTGTGTTGAGAGGGAGGCTTGGTTTAACCGC
ACGCTGGAGGAGAATCTGGACAAGTGGCAGGGGCTTGATGACGATGCC
Transcript >Ophio5|4152
ATGGGCCTTGCTGGTGTCATGGCGACGTGGCAGTATCAAACTCTCTACTTTGGTCACGAGCGCGGTCATCGCTTC
TCCGTTCTTCTACTCGATAATCGGGGCATGGGTCTGAGCGATAGGCCTCTGATGCGGTACTCGACCAGTGAGATG
GCGCGCGACGTGATGGAGGTCTTGGACCATGTTGGCTGGCGAGACAGACGACAAGTTCACGTTGTTGGCATCTCT
CTCGGGGGTATGATTGCGCAGGAGTTGGCGTGTCTGATTCCTCAACGGATATCCTCCCTCAGTCTGATTTCTACC
GCCGCTCATCTCCGTGGTGGCGATGACGATGACGACGACGACGACGACGACGACGAGGGAGATGCAAGTCGTCGT
CAGCAGTATACCTCGACACTGGCCCACGCAGCGACAGCTATAACGGACCGTCTCAGCATGCTGAAGCCAAGAAGC
GAGGAAGAGACCATTTTCCATACATCCCGTCTCGTCTTCGTCCCCCAATGGCTCTCCGCTCCGGACCAAGGCTCC
CTCCCCAACCCAGACTCAACACCACGATGCCAACAGCCAGCGACGACCAGTCGCGAATACGGTCGCTTCCACTCC
AACTTTCAGCGCTATCAGGCTCAGGAGCTGGTCAAGCGTCGCGGACCCGGCTTCTCCCGTTTGGGTTACTTGTGT
CAGGCTGTTGCCGCCGTATGGCATTGGAAGTCGCATCGTCAGTTGAGGTCCATGGCTGATGACGTCGGTCGGAAA
AGGATCTTGGTCATGCATGGCCGTCATGATTTGCTTATTCGCCTCCGCTTCGGTCTTAAGCTCATCGACGCCCTT
GAGCCTGCTGTCGTCCATGTCGTCGATGGTATGGGTCATGGGCCTTGTGTTGAGAGGGAGGCTTGGTTTAACCGC
ACGCTGGAGGAGAATCTGGACAAGTGGCAGGGGCTTGATGACGATGCCTGA
Gene >Ophio5|4152
ATGGGCCTTGCTGGTGTCATGGCGACGTGGCAGTATCAAACTCTCTACTTTGGTCACGAGCGCGGTCATCGCTTC
TCCGTTCTTCTACTCGATAATCGGGGCATGGGTCTGAGCGATAGGCCTCTGATGCGGTACTCGACCAGTGAGATG
GCGCGCGACGTGATGGAGGTCTTGGACCATGTTGGCTGGCGAGACAGACGACAAGTTCACGTTGTTGGCATCTCT
CTCGGGGGTATGATTGCGCAGGAGTTGGCGTGTCTGATTCCTCAACGGATATCCTCCCTCAGTCTGATTTCTACC
GCCGCTCATCTCCGTGGTGGCGATGACGATGACGACGACGACGACGACGACGACGAGGGAGATGCAAGTCGTCGT
CAGCAGTATACCTCGACACTGGCCCACGCAGCGACAGCTATAACGGACCGTCTCAGCATGCTGAAGCCAAGAAGC
GAGGAAGAGACCATTTTCCATACATCCCGTCTCGTCTTCGTCCCCCAATGGCTCTCCGCTCCGGACCAAGGCTCC
CTCCCCAACCCAGACTCAACACCACGATGCCAACAGCCAGCGACGACCAGTCGCGAATACGGTCGCTTCCACTCC
AACTTTCAGCGCTATCAGGCTCAGGAGCTGGTCAAGCGTCGCGGACCCGGCTTCTCCCGTTTGGGTTACTTGTGT
CAGGCTGTTGCCGCCGTATGGCATTGGAAGTCGCATCGTCAGTTGAGGTCCATGGCTGATGACGTCGGTCGGAAA
AGGATCTTGGTCATGCATGGCCGTCATGATTTGCTTATTCGCCTCCGCTTCGGTCTTAAGCTCATCGACGCCCTT
GAGCCTGCTGTCGTCCATGTCGTCGATGGTATGGGTCATGGGCCTTGTGTTGAGAGGGAGGCTTGGTTTAACCGC
ACGCTGGAGGAGAATCTGGACAAGTGGCAGGGGCTTGATGACGATGCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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