© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4147 |
| Gene name | |
| Location | scaffold_326:12793..13854 |
| Strand | + |
| Gene length (bp) | 1061 |
| Transcript length (bp) | 891 |
| Coding sequence length (bp) | 888 |
| Protein length (aa) | 296 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01545 | Cation_efflux | Cation efflux family | 3.4E-10 | 151 | 283 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14329|ZRG17_SCHPO | Probable zinc transporter zrg17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrg17 PE=1 SV=1 | 90 | 253 | 6.0E-21 |
| sp|P53735|ZRG17_YEAST | Protein ZRG17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRG17 PE=1 SV=1 | 70 | 252 | 8.0E-21 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0009987 | cellular process | No |
| GO:0006811 | ion transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 140 | 157 | 17 |
| 2 | 167 | 189 | 22 |
| 3 | 210 | 229 | 19 |
| 4 | 254 | 276 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 104.20 | 57.34 | 151.07 |
| CcL | In ants, during behavior modification | 114.20 | 61.97 | 166.43 |
| CcD | In ants, recently dead | 101.86 | 56.09 | 147.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.734878 | no |
| SC16a | CcD | 0.935447 | no |
| CcL | CcD | 0.657676 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4147 MEPTDTHPDGQPPPTLIVEDTDASSALTASQLAHEPPHLSSPALLLSPPSAMPSDGDAEETASPAARANPFNFKT QVISASPVKSNMGQRRGHRYKHSSISTQHQIFQEPPQRPPPVLPVSLPIPTVAEAWMSMHKEQRARLYWSLCHLA VAVFIFFRSHASLAAMALSHLVFFDAGSAAVCVAVDILGNFDVWRRSSIRHPFGLERAEVLVGFALSIFLLFGGF DLVSHNLKHFLESLGHHEAHHEHAHDHVAPGSIDLVAALAIGSTLISAYGLKNHARIAKVMRVSYLAALPS |
| Coding | >Ophio5|4147 ATGGAGCCGACTGATACTCATCCTGACGGTCAACCTCCGCCAACTCTGATCGTTGAAGACACTGACGCTTCTAGC GCCCTTACAGCGAGTCAATTAGCGCATGAGCCGCCGCATCTCTCCTCCCCCGCCCTTCTCCTGTCTCCGCCGTCC GCCATGCCCAGCGACGGTGACGCCGAGGAGACAGCCTCGCCCGCTGCCCGCGCAAACCCTTTCAACTTCAAGACG CAGGTCATATCTGCGTCGCCGGTCAAATCCAACATGGGCCAGCGTAGGGGCCACAGATACAAGCATAGCAGCATT TCCACTCAGCACCAAATTTTCCAGGAGCCGCCGCAGAGGCCGCCTCCGGTCCTGCCCGTGTCCCTTCCCATCCCT ACAGTTGCCGAGGCCTGGATGAGCATGCACAAGGAACAGCGCGCCAGGCTTTACTGGAGCTTGTGTCACCTTGCC GTCGCCGTCTTCATCTTCTTCCGATCTCATGCTTCCCTCGCGGCCATGGCTCTGTCACATCTAGTCTTCTTCGAT GCCGGCAGTGCCGCCGTCTGCGTTGCCGTCGATATCCTTGGCAACTTCGACGTCTGGCGGCGGAGCAGCATTCGA CACCCCTTTGGACTTGAGAGGGCAGAAGTGCTTGTTGGCTTCGCTCTATCAATATTTCTTCTATTCGGCGGTTTT GACTTGGTTTCCCACAACCTCAAGCATTTCCTCGAATCATTGGGCCATCATGAGGCTCACCACGAGCATGCCCAT GACCACGTTGCACCTGGTTCCATCGACCTGGTCGCGGCCCTTGCCATCGGCAGCACACTCATTTCGGCATACGGC CTCAAGAACCATGCTCGTATTGCCAAAGTCATGAGGGTGTCATACCTGGCCGCTCTACCCAGC |
| Transcript | >Ophio5|4147 ATGGAGCCGACTGATACTCATCCTGACGGTCAACCTCCGCCAACTCTGATCGTTGAAGACACTGACGCTTCTAGC GCCCTTACAGCGAGTCAATTAGCGCATGAGCCGCCGCATCTCTCCTCCCCCGCCCTTCTCCTGTCTCCGCCGTCC GCCATGCCCAGCGACGGTGACGCCGAGGAGACAGCCTCGCCCGCTGCCCGCGCAAACCCTTTCAACTTCAAGACG CAGGTCATATCTGCGTCGCCGGTCAAATCCAACATGGGCCAGCGTAGGGGCCACAGATACAAGCATAGCAGCATT TCCACTCAGCACCAAATTTTCCAGGAGCCGCCGCAGAGGCCGCCTCCGGTCCTGCCCGTGTCCCTTCCCATCCCT ACAGTTGCCGAGGCCTGGATGAGCATGCACAAGGAACAGCGCGCCAGGCTTTACTGGAGCTTGTGTCACCTTGCC GTCGCCGTCTTCATCTTCTTCCGATCTCATGCTTCCCTCGCGGCCATGGCTCTGTCACATCTAGTCTTCTTCGAT GCCGGCAGTGCCGCCGTCTGCGTTGCCGTCGATATCCTTGGCAACTTCGACGTCTGGCGGCGGAGCAGCATTCGA CACCCCTTTGGACTTGAGAGGGCAGAAGTGCTTGTTGGCTTCGCTCTATCAATATTTCTTCTATTCGGCGGTTTT GACTTGGTTTCCCACAACCTCAAGCATTTCCTCGAATCATTGGGCCATCATGAGGCTCACCACGAGCATGCCCAT GACCACGTTGCACCTGGTTCCATCGACCTGGTCGCGGCCCTTGCCATCGGCAGCACACTCATTTCGGCATACGGC CTCAAGAACCATGCTCGTATTGCCAAAGTCATGAGGGTGTCATACCTGGCCGCTCTACCCAGCTGA |
| Gene | >Ophio5|4147 ATGGAGCCGACTGATACTCATCCTGACGGTCAACCTCCGCCAACTCTGATCGTTGAAGACACTGACGCTTCTAGC GCCCTTACAGCGAGTCAATTAGCGCATGAGCCGCCGCATCTCTCCTCCCCCGCCCTTCTCCTGTCTCCGCCGTCC GCCATGCCCAGCGACGGTGACGCCGAGGAGACAGCCTCGCCCGCTGCCCGCGCAAACCCTTTCAACTTCAAGACG CAGGTCATATCTGCGTCGCCGGTCAAATCCGTGCGTTGGCGAATCCAGAAGTGACACCCTCGCCGTGGTTGATTG AAGCTGACTGTCAACCGCTGCGCAGAACATGGGCCAGCGTAGGGGCCACAGATACAAGCATAGCAGCATTTCCAC TCAGCACCAAATTTTCCAGGAGCCGCCGCAGAGGCCGCCTCCGGTCCTGCCCGTGTCCCTTCCCATCCCTACAGT TGCCGAGGCCTGGATGAGCATGCACAAGGAACAGCGCGCCAGGCTTTACTGGAGCTTGTGTCACCTTGCCGTCGC CGTCTTCATCTTCTTCCGATCTCATGCTTCCCTCGCGGCCATGGCTCTGTCACATCTAGTCTTCTTCGATGCCGG CAGTGCCGCCGTCTGCGTTGCCGTCGATATCCTTGGCAACTTCGACGTCTGGCGGCGGAGCAGCATTCGACACCC CTTTGGACTTGAGAGGGCAGAAGTGCTTGTTGGCTTCGCTCTATCAATATTTCTTCTATTCGGCGGTTTTGACTT GGTTTCCCACAACCTCAAGCATTTCCTCGAATCATTGGGCCATCATGAGGCTCACCACGAGCATGCCCATGACCA CGTTGCACCTGGTTCCATCGACCTGGTCGCGGCCCTTGCCATCGGCAGCACACTCATTTCGGCATACGGCCTCAA GAACCATGCTCGTATTGCCAAAGTCATGAGGGTGTCATACCTGGCCGCTCTACCCAGTGTCTTGTCCAATCCTTT CCACTTTCTCACACTTTTCTTTTCTTCGCTCATTGCACTATTACCCTTGTTATCCATATCCCTCTATGCGTGGTT AGATAGGCTGA |