© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|414 |
| Gene name | |
| Location | scaffold_11:27285..28584 |
| Strand | + |
| Gene length (bp) | 1299 |
| Transcript length (bp) | 750 |
| Coding sequence length (bp) | 747 |
| Protein length (aa) | 249 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25710|NUJM_NEUCR | NADH-ubiquinone oxidoreductase 21.3 kDa subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B13D24.010 PE=4 SV=1 | 19 | 200 | 2.0E-43 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 114 | 136 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 123.66 | 67.78 | 179.54 |
| CcL | In ants, during behavior modification | 75.16 | 38.48 | 111.84 |
| CcD | In ants, recently dead | 146.38 | 79.32 | 213.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.028402 | yes |
| SC16a | CcD | 0.494424 | no |
| CcL | CcD | 0.004113 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|414 MEDRRKKTSAFAGEAEAPFVPHDVIGLTTKTGFIGAGAGLFIASIRNAMSRGNVGAMSVFIRGRGIIGMAAAAPA TFAFFFAATSNLRQKTDTWAATFGGFMSGGVLGLPSRRLPVVLGLGAVVGIWQGSFFFLGNRIDSFYDEEDEFQR KEIIRRTTRIPVEQTIAEIGEGPGITPQGYEERRRKRIKEKYGWDINPVDGVLAQPPRSREGRFSTSRAGRPPIS PEGAGIRIGGRPVRFARITHTLRD |
| Coding | >Ophio5|414 ATGGAAGACCGCCGCAAAAAAACATCAGCATTCGCTGGTGAAGCCGAGGCGCCGTTTGTTCCGCACGATGTCATC GGCTTGACGACCAAGACAGGCTTCATCGGCGCCGGCGCCGGTCTCTTCATCGCCTCTATCCGCAACGCCATGTCG CGAGGCAATGTTGGCGCTATGAGTGTCTTTATTCGTGGTCGCGGGATCATTGGCATGGCTGCTGCTGCCCCCGCT ACTTTTGCCTTCTTCTTCGCTGCTACTTCGAACCTGCGGCAGAAGACGGACACTTGGGCTGCTACCTTTGGTGGC TTCATGAGCGGCGGAGTCCTTGGCCTACCTTCGCGCCGACTGCCTGTCGTCCTCGGGCTCGGCGCCGTCGTCGGC ATATGGCAGGGTAGCTTCTTCTTCTTGGGCAACCGCATCGACAGCTTCTATGACGAGGAGGACGAGTTCCAGCGC AAGGAGATCATCCGACGAACCACCCGTATACCCGTCGAGCAGACCATTGCCGAGATTGGCGAGGGACCCGGCATC ACGCCGCAGGGTTACGAGGAGCGTCGGCGCAAGCGCATCAAGGAAAAGTATGGCTGGGACATTAACCCGGTAGAC GGAGTGCTCGCGCAGCCGCCGCGGTCTAGAGAAGGGAGGTTTTCTACTTCACGTGCCGGACGCCCTCCAATCAGC CCCGAGGGTGCTGGCATCCGGATCGGAGGACGCCCGGTGCGTTTCGCAAGAATAACTCATACGCTTCGCGAC |
| Transcript | >Ophio5|414 ATGGAAGACCGCCGCAAAAAAACATCAGCATTCGCTGGTGAAGCCGAGGCGCCGTTTGTTCCGCACGATGTCATC GGCTTGACGACCAAGACAGGCTTCATCGGCGCCGGCGCCGGTCTCTTCATCGCCTCTATCCGCAACGCCATGTCG CGAGGCAATGTTGGCGCTATGAGTGTCTTTATTCGTGGTCGCGGGATCATTGGCATGGCTGCTGCTGCCCCCGCT ACTTTTGCCTTCTTCTTCGCTGCTACTTCGAACCTGCGGCAGAAGACGGACACTTGGGCTGCTACCTTTGGTGGC TTCATGAGCGGCGGAGTCCTTGGCCTACCTTCGCGCCGACTGCCTGTCGTCCTCGGGCTCGGCGCCGTCGTCGGC ATATGGCAGGGTAGCTTCTTCTTCTTGGGCAACCGCATCGACAGCTTCTATGACGAGGAGGACGAGTTCCAGCGC AAGGAGATCATCCGACGAACCACCCGTATACCCGTCGAGCAGACCATTGCCGAGATTGGCGAGGGACCCGGCATC ACGCCGCAGGGTTACGAGGAGCGTCGGCGCAAGCGCATCAAGGAAAAGTATGGCTGGGACATTAACCCGGTAGAC GGAGTGCTCGCGCAGCCGCCGCGGTCTAGAGAAGGGAGGTTTTCTACTTCACGTGCCGGACGCCCTCCAATCAGC CCCGAGGGTGCTGGCATCCGGATCGGAGGACGCCCGGTGCGTTTCGCAAGAATAACTCATACGCTTCGCGACTAA |
| Gene | >Ophio5|414 ATGGAAGACCGCCGCAAAAAAACATCAGCATTCGCTGGTGAAGCCGAGGCGCCGTTTGTTCCGCACGATGTCATC GGCTTGACGACCAAGACAGGCTTCATCGGCGCCGGCGCCGGTCTCTTCATCGCCTCTATCCGCAACGCCATGTCG CGAGGCAATGTTGGCGCTATGAGTGTCTTTATTCGTGGTCGCGGGATCATTGGCATGGCTGGTCCGTCTCTCCAC CGCAGAGCTTTCGGAAAAACCTCCGCCCTGCGCGTGCTCGTCTCTCTTTCAACCCTCGATGGGCTGACGTGCTAT TGTGCCCCTCGTCTTCGTCTGGGTTGGCAGCTGCTGCCCCCGCTACTTTTGCCTTCTTCTTCGCTGCTACTTCGA ACCTGCGGCAGAAGACGGACACTTGGGCTGCTACCTTTGGTGGCTTCATGAGCGGCGGAGTCCTTGGCCTACCTT GTACTTTCTCCCTCTCCCCCTTGTGCTACTGCGGCTAAGTGCCCCCTTTCCCTTACAGCGCGCCGACTGCCTGTC GTCCTCGGGCTCGGCGCCGTCGTCGGCATATGGCAGGGTAGCTTCTTCTTCTTGGGCAACCGCATCGACAGCTTC TATGACGAGGAGGACGAGTTCCAGCGCAAGGAGATCATCCGACGAACCACCCGTATACCCGTCGAGCAGACCATT GCCGAGATTGGCGAGGGACCCGGTGAGCAACTCCTCTGTTTTCGTTCTCCAACACCTGCCGCTGACCGGCCTTGC CTTCCCAGGCATCACGCCGCAGGGTTACGAGGAGCGTCGGCGCAAGCGCATCAAGGAAAAGTATGGCTGGGACAT TAACCCGGTCAGTGCCACCATCGATGGCAGCCATTAAGCCTCGCTGCGGGAGAGCCTGTTTGGCACTGTGCAAGG CACCGCGTCCCAGGTAGACGGAGTGCTCGCGCAGCCGCCGCGGTCTAGAGAAGGGAGGTTTTCTACTTCACGTGC CGGACGCCCTCCAATCAGCCCCGAGGGTGCTGGCATCCGGATCGGAGGACGCCCGGTGCGTTTCGCAAGGTAAGC TCCTTCTCAAGCAAGATTACCTCTCGCCTTTCTCTTTCTTGTTGCCATCGTGATGAACCTATCGAGTCAGAGGCT GTTTATGACGTACCCTGATTACAAGACTCACCAAAATCTACATTGTCTACCTGAAGCTGGCCCCTTTTTTCCTAT ACTGCCTTCTCATCTGTCGTGGCGGGGACCTGGGTCCGCCGTGTGGATCAGCGGCTAACCATGAGGCTTCGCAGA ATAACTCATACGCTTCGCGACTAA |