Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|414
Gene name
Locationscaffold_11:27285..28584
Strand+
Gene length (bp)1299
Transcript length (bp)750
Coding sequence length (bp)747
Protein length (aa) 249

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P25710|NUJM_NEUCR NADH-ubiquinone oxidoreductase 21.3 kDa subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B13D24.010 PE=4 SV=1 19 200 2.0E-43

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 63 0.5

Transmembrane Domains

Domain # Start End Length
1 60 82 22
2 114 136 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|414
MEDRRKKTSAFAGEAEAPFVPHDVIGLTTKTGFIGAGAGLFIASIRNAMSRGNVGAMSVFIRGRGIIGMAAAAPA
TFAFFFAATSNLRQKTDTWAATFGGFMSGGVLGLPSRRLPVVLGLGAVVGIWQGSFFFLGNRIDSFYDEEDEFQR
KEIIRRTTRIPVEQTIAEIGEGPGITPQGYEERRRKRIKEKYGWDINPVDGVLAQPPRSREGRFSTSRAGRPPIS
PEGAGIRIGGRPVRFARITHTLRD
Coding >Ophio5|414
ATGGAAGACCGCCGCAAAAAAACATCAGCATTCGCTGGTGAAGCCGAGGCGCCGTTTGTTCCGCACGATGTCATC
GGCTTGACGACCAAGACAGGCTTCATCGGCGCCGGCGCCGGTCTCTTCATCGCCTCTATCCGCAACGCCATGTCG
CGAGGCAATGTTGGCGCTATGAGTGTCTTTATTCGTGGTCGCGGGATCATTGGCATGGCTGCTGCTGCCCCCGCT
ACTTTTGCCTTCTTCTTCGCTGCTACTTCGAACCTGCGGCAGAAGACGGACACTTGGGCTGCTACCTTTGGTGGC
TTCATGAGCGGCGGAGTCCTTGGCCTACCTTCGCGCCGACTGCCTGTCGTCCTCGGGCTCGGCGCCGTCGTCGGC
ATATGGCAGGGTAGCTTCTTCTTCTTGGGCAACCGCATCGACAGCTTCTATGACGAGGAGGACGAGTTCCAGCGC
AAGGAGATCATCCGACGAACCACCCGTATACCCGTCGAGCAGACCATTGCCGAGATTGGCGAGGGACCCGGCATC
ACGCCGCAGGGTTACGAGGAGCGTCGGCGCAAGCGCATCAAGGAAAAGTATGGCTGGGACATTAACCCGGTAGAC
GGAGTGCTCGCGCAGCCGCCGCGGTCTAGAGAAGGGAGGTTTTCTACTTCACGTGCCGGACGCCCTCCAATCAGC
CCCGAGGGTGCTGGCATCCGGATCGGAGGACGCCCGGTGCGTTTCGCAAGAATAACTCATACGCTTCGCGAC
Transcript >Ophio5|414
ATGGAAGACCGCCGCAAAAAAACATCAGCATTCGCTGGTGAAGCCGAGGCGCCGTTTGTTCCGCACGATGTCATC
GGCTTGACGACCAAGACAGGCTTCATCGGCGCCGGCGCCGGTCTCTTCATCGCCTCTATCCGCAACGCCATGTCG
CGAGGCAATGTTGGCGCTATGAGTGTCTTTATTCGTGGTCGCGGGATCATTGGCATGGCTGCTGCTGCCCCCGCT
ACTTTTGCCTTCTTCTTCGCTGCTACTTCGAACCTGCGGCAGAAGACGGACACTTGGGCTGCTACCTTTGGTGGC
TTCATGAGCGGCGGAGTCCTTGGCCTACCTTCGCGCCGACTGCCTGTCGTCCTCGGGCTCGGCGCCGTCGTCGGC
ATATGGCAGGGTAGCTTCTTCTTCTTGGGCAACCGCATCGACAGCTTCTATGACGAGGAGGACGAGTTCCAGCGC
AAGGAGATCATCCGACGAACCACCCGTATACCCGTCGAGCAGACCATTGCCGAGATTGGCGAGGGACCCGGCATC
ACGCCGCAGGGTTACGAGGAGCGTCGGCGCAAGCGCATCAAGGAAAAGTATGGCTGGGACATTAACCCGGTAGAC
GGAGTGCTCGCGCAGCCGCCGCGGTCTAGAGAAGGGAGGTTTTCTACTTCACGTGCCGGACGCCCTCCAATCAGC
CCCGAGGGTGCTGGCATCCGGATCGGAGGACGCCCGGTGCGTTTCGCAAGAATAACTCATACGCTTCGCGACTAA
Gene >Ophio5|414
ATGGAAGACCGCCGCAAAAAAACATCAGCATTCGCTGGTGAAGCCGAGGCGCCGTTTGTTCCGCACGATGTCATC
GGCTTGACGACCAAGACAGGCTTCATCGGCGCCGGCGCCGGTCTCTTCATCGCCTCTATCCGCAACGCCATGTCG
CGAGGCAATGTTGGCGCTATGAGTGTCTTTATTCGTGGTCGCGGGATCATTGGCATGGCTGGTCCGTCTCTCCAC
CGCAGAGCTTTCGGAAAAACCTCCGCCCTGCGCGTGCTCGTCTCTCTTTCAACCCTCGATGGGCTGACGTGCTAT
TGTGCCCCTCGTCTTCGTCTGGGTTGGCAGCTGCTGCCCCCGCTACTTTTGCCTTCTTCTTCGCTGCTACTTCGA
ACCTGCGGCAGAAGACGGACACTTGGGCTGCTACCTTTGGTGGCTTCATGAGCGGCGGAGTCCTTGGCCTACCTT
GTACTTTCTCCCTCTCCCCCTTGTGCTACTGCGGCTAAGTGCCCCCTTTCCCTTACAGCGCGCCGACTGCCTGTC
GTCCTCGGGCTCGGCGCCGTCGTCGGCATATGGCAGGGTAGCTTCTTCTTCTTGGGCAACCGCATCGACAGCTTC
TATGACGAGGAGGACGAGTTCCAGCGCAAGGAGATCATCCGACGAACCACCCGTATACCCGTCGAGCAGACCATT
GCCGAGATTGGCGAGGGACCCGGTGAGCAACTCCTCTGTTTTCGTTCTCCAACACCTGCCGCTGACCGGCCTTGC
CTTCCCAGGCATCACGCCGCAGGGTTACGAGGAGCGTCGGCGCAAGCGCATCAAGGAAAAGTATGGCTGGGACAT
TAACCCGGTCAGTGCCACCATCGATGGCAGCCATTAAGCCTCGCTGCGGGAGAGCCTGTTTGGCACTGTGCAAGG
CACCGCGTCCCAGGTAGACGGAGTGCTCGCGCAGCCGCCGCGGTCTAGAGAAGGGAGGTTTTCTACTTCACGTGC
CGGACGCCCTCCAATCAGCCCCGAGGGTGCTGGCATCCGGATCGGAGGACGCCCGGTGCGTTTCGCAAGGTAAGC
TCCTTCTCAAGCAAGATTACCTCTCGCCTTTCTCTTTCTTGTTGCCATCGTGATGAACCTATCGAGTCAGAGGCT
GTTTATGACGTACCCTGATTACAAGACTCACCAAAATCTACATTGTCTACCTGAAGCTGGCCCCTTTTTTCCTAT
ACTGCCTTCTCATCTGTCGTGGCGGGGACCTGGGTCCGCCGTGTGGATCAGCGGCTAACCATGAGGCTTCGCAGA
ATAACTCATACGCTTCGCGACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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