© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4122 |
| Gene name | |
| Location | scaffold_323:1306..3138 |
| Strand | - |
| Gene length (bp) | 1832 |
| Transcript length (bp) | 1515 |
| Coding sequence length (bp) | 1512 |
| Protein length (aa) | 504 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 1.2E-17 | 59 | 194 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D7UQ40|SOL5_ALTSO | Bifunctional solanapyrone synthase OS=Alternaria solani GN=sol5 PE=1 SV=1 | 58 | 495 | 6.0E-35 |
| sp|D4B1P2|A2372_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02372 PE=1 SV=1 | 38 | 495 | 1.0E-27 |
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 47 | 226 | 3.0E-14 |
| sp|Q54H55|Y8969_DICDI | FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 | 25 | 307 | 6.0E-10 |
| sp|Q9FUJ3|CKX2_ARATH | Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana GN=CKX2 PE=1 SV=2 | 1 | 218 | 1.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D7UQ40|SOL5_ALTSO | Bifunctional solanapyrone synthase OS=Alternaria solani GN=sol5 PE=1 SV=1 | 58 | 495 | 6.0E-35 |
| sp|D4B1P2|A2372_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02372 PE=1 SV=1 | 38 | 495 | 1.0E-27 |
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 47 | 226 | 3.0E-14 |
| sp|Q54H55|Y8969_DICDI | FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 | 25 | 307 | 6.0E-10 |
| sp|Q9FUJ3|CKX2_ARATH | Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana GN=CKX2 PE=1 SV=2 | 1 | 218 | 1.0E-08 |
| sp|P43485|MCRA_STRLA | Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2 | 59 | 224 | 3.0E-08 |
| sp|Q9FZC7|FOX4_ARATH | Flavin-dependent oxidoreductase FOX4 OS=Arabidopsis thaliana GN=FOX4 PE=2 SV=1 | 44 | 221 | 1.0E-07 |
| sp|D4AS41|A7056_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02478 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_07056 PE=1 SV=2 | 66 | 207 | 1.0E-07 |
| sp|D4B1Z7|A2478_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02478 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02478 PE=1 SV=1 | 59 | 219 | 3.0E-06 |
| sp|Q9LTS3|CKX3_ARATH | Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1 | 57 | 218 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1591 | 0.051 | 0.9397 | 0.1321 | 0.0498 | 0.012 | 0.2051 | 0.2882 | 0.0639 | 0.0153 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 16 | 0.999755 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| AA7 | 1.1E-44 | 49 | 490 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.29 | 0.0 | 0.76 |
| CcL | In ants, during behavior modification | 0.46 | 0.0 | 1.16 |
| CcD | In ants, recently dead | 0.20 | 0.0 | 0.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 1.0 | no |
| SC16a | CcD | 1.0 | no |
| CcL | CcD | 1.0 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 23 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4122 MKSFVIVAALAGFVNAILSGPECCNRLSSAVPFIYHPPSTANYNYLINNRWSGNSILHPSCVVAPKSSLDVSKAL QVLSKHQCKFAVKGGGHNANRGANSIDDAVSIDLSFLDTAELAPDRSHVSLGAGGSWGRAYDKFNSSDIGFLGGL CANVSVGAVALGGGESLFQASMGWAVDHILNYEIVLGTGRIINANRRENGDLFKALKGGNTNFGIVTKIDLASFD FKDFWDAEVVMSLNGPQATRSQMLDIISKTTVDFVANNAKDVANGLHVAVTSVAANNSELAIMGITNVKNVANPP AAKPIRSIPNQRANVERHGRIADYVHSISGFQPRGFRQVTASVTIKNDYKTLREIWDASNAVYRSLPQNDKIDWI VELYPQPRVQQSYSLKYGGNSLGLANVKHDQIVIWLVSRWRDPSVDGIMEVAQKQFVAAVEAVANKHGTLSPFVY VNFAGSFQNPLCGYGAESVAHLKKMARKYDPQGVFQHLMSGGFKVSQANCGRRQ |
| Coding | >Ophio5|4122 ATGAAGAGCTTCGTCATAGTCGCGGCTCTTGCCGGGTTCGTCAATGCGATTCTGTCAGGGCCTGAATGCTGCAAC CGCCTCTCCAGTGCCGTCCCCTTCATCTACCACCCCCCCTCGACGGCCAACTACAACTACCTGATCAACAACCGC TGGTCCGGCAACTCGATCCTCCACCCGTCGTGCGTCGTGGCCCCCAAATCATCACTCGACGTGTCCAAAGCGCTG CAAGTGCTCAGCAAGCACCAATGCAAGTTCGCCGTCAAGGGCGGCGGCCACAACGCCAACCGCGGCGCCAACAGT ATCGACGACGCCGTCTCCATCGATCTCAGCTTTCTCGACACGGCAGAGCTGGCCCCCGATCGATCACATGTCAGT CTCGGTGCTGGTGGCTCTTGGGGTCGCGCATACGACAAGTTTAATAGTAGCGATATCGGCTTCCTCGGTGGTCTT TGCGCCAATGTTAGCGTCGGCGCCGTCGCTCTCGGTGGCGGAGAGTCGCTCTTCCAGGCTAGTATGGGCTGGGCT GTTGATCATATCCTAAACTATGAGATTGTCCTGGGCACTGGTCGCATCATCAACGCGAACCGGAGAGAAAACGGC GATCTTTTCAAGGCCCTCAAGGGCGGCAACACCAACTTCGGCATCGTCACCAAAATCGACCTCGCATCTTTCGAT TTCAAAGATTTTTGGGACGCAGAGGTCGTCATGTCTCTCAATGGCCCTCAGGCAACCCGCTCGCAGATGCTCGAC ATCATCAGCAAAACGACGGTCGACTTCGTGGCCAACAATGCCAAAGACGTGGCCAACGGCCTACACGTCGCCGTC ACCTCTGTGGCTGCCAACAACTCCGAGCTGGCCATCATGGGCATCACGAACGTGAAGAACGTTGCGAATCCCCCT GCCGCCAAGCCCATTCGCAGTATTCCGAACCAGCGGGCCAACGTGGAGCGTCATGGTAGGATTGCCGACTATGTC CACTCCATTAGCGGCTTTCAGCCCAGGGGCTTCCGCCAAGTCACGGCCAGCGTGACGATTAAAAACGACTACAAG ACGCTGCGGGAAATCTGGGATGCCTCAAACGCCGTCTACAGGTCACTGCCGCAAAATGACAAAATAGACTGGATA GTCGAGCTCTACCCTCAGCCCAGAGTCCAACAATCCTATTCCTTGAAATACGGAGGCAACAGTCTCGGACTAGCC AACGTCAAGCACGACCAGATCGTCATCTGGCTCGTCTCACGCTGGAGAGACCCGAGCGTCGATGGCATCATGGAA GTCGCCCAAAAACAGTTCGTCGCCGCCGTCGAGGCCGTTGCGAACAAGCACGGCACCCTCTCCCCTTTCGTCTAC GTCAATTTCGCCGGCTCGTTCCAGAATCCTCTCTGCGGCTACGGCGCCGAGAGCGTGGCTCATCTCAAGAAGATG GCTAGGAAGTATGACCCTCAGGGTGTCTTCCAGCATCTGATGAGTGGCGGCTTCAAGGTTAGCCAGGCGAACTGT GGCCGGCGACAG |
| Transcript | >Ophio5|4122 ATGAAGAGCTTCGTCATAGTCGCGGCTCTTGCCGGGTTCGTCAATGCGATTCTGTCAGGGCCTGAATGCTGCAAC CGCCTCTCCAGTGCCGTCCCCTTCATCTACCACCCCCCCTCGACGGCCAACTACAACTACCTGATCAACAACCGC TGGTCCGGCAACTCGATCCTCCACCCGTCGTGCGTCGTGGCCCCCAAATCATCACTCGACGTGTCCAAAGCGCTG CAAGTGCTCAGCAAGCACCAATGCAAGTTCGCCGTCAAGGGCGGCGGCCACAACGCCAACCGCGGCGCCAACAGT ATCGACGACGCCGTCTCCATCGATCTCAGCTTTCTCGACACGGCAGAGCTGGCCCCCGATCGATCACATGTCAGT CTCGGTGCTGGTGGCTCTTGGGGTCGCGCATACGACAAGTTTAATAGTAGCGATATCGGCTTCCTCGGTGGTCTT TGCGCCAATGTTAGCGTCGGCGCCGTCGCTCTCGGTGGCGGAGAGTCGCTCTTCCAGGCTAGTATGGGCTGGGCT GTTGATCATATCCTAAACTATGAGATTGTCCTGGGCACTGGTCGCATCATCAACGCGAACCGGAGAGAAAACGGC GATCTTTTCAAGGCCCTCAAGGGCGGCAACACCAACTTCGGCATCGTCACCAAAATCGACCTCGCATCTTTCGAT TTCAAAGATTTTTGGGACGCAGAGGTCGTCATGTCTCTCAATGGCCCTCAGGCAACCCGCTCGCAGATGCTCGAC ATCATCAGCAAAACGACGGTCGACTTCGTGGCCAACAATGCCAAAGACGTGGCCAACGGCCTACACGTCGCCGTC ACCTCTGTGGCTGCCAACAACTCCGAGCTGGCCATCATGGGCATCACGAACGTGAAGAACGTTGCGAATCCCCCT GCCGCCAAGCCCATTCGCAGTATTCCGAACCAGCGGGCCAACGTGGAGCGTCATGGTAGGATTGCCGACTATGTC CACTCCATTAGCGGCTTTCAGCCCAGGGGCTTCCGCCAAGTCACGGCCAGCGTGACGATTAAAAACGACTACAAG ACGCTGCGGGAAATCTGGGATGCCTCAAACGCCGTCTACAGGTCACTGCCGCAAAATGACAAAATAGACTGGATA GTCGAGCTCTACCCTCAGCCCAGAGTCCAACAATCCTATTCCTTGAAATACGGAGGCAACAGTCTCGGACTAGCC AACGTCAAGCACGACCAGATCGTCATCTGGCTCGTCTCACGCTGGAGAGACCCGAGCGTCGATGGCATCATGGAA GTCGCCCAAAAACAGTTCGTCGCCGCCGTCGAGGCCGTTGCGAACAAGCACGGCACCCTCTCCCCTTTCGTCTAC GTCAATTTCGCCGGCTCGTTCCAGAATCCTCTCTGCGGCTACGGCGCCGAGAGCGTGGCTCATCTCAAGAAGATG GCTAGGAAGTATGACCCTCAGGGTGTCTTCCAGCATCTGATGAGTGGCGGCTTCAAGGTTAGCCAGGCGAACTGT GGCCGGCGACAGTGA |
| Gene | >Ophio5|4122 ATGAAGAGCTTCGTCATAGTCGCGGCTCTTGCCGGGTTCGTCAATGCGATTCTGTCAGGGCCTGAATGCGTGAGT CCTTTCTCTCCTCAGTGCACGATAACCAGCAAAGACAAAAACAAGATGGAAGAAAAAAAAAAAGTCTGTATAAAA CATGATGAAAGCTGACAAGAGTTTTCGATGCCCTTCCAGTGCAACCGCCTCTCCAGTGCCGTCCCCTTCATCTAC CACCCCCCCTCGACGGCCAACTACAACTACCTGATCAACAACCGCTGGTCCGGCAACTCGATCCTCCACCCGTCG TGCGTCGTGGCCCCCAAATCATCACTCGACGTGTCCAAAGCGCTGCAAGTGCTCAGCAAGCACCAATGCAAGTTC GCCGTCAAGGGCGGCGGCCACAACGCCAACCGCGGCGCCAACAGTATCGACGACGCCGTCTCCATCGATCTCAGC TTTCTCGACACGGCAGAGCTGGCCCCCGATCGATCACATGTCAGTCTCGGTGCTGGTGGCTCTTGGGGTCGCGCA TACGACAAGTTTAATAGTAGCGATATCGGCTTCCTCGGTGGTCTTTGCGCCAATGTTAGCGTCGGCGCCGTCGCT CTCGGTGGCGGAGAGTCGCTCTTCCAGGCTAGTATGGGCTGGGCTGTTGATCATATCCTAAACTATGAGATTGTC CTGGGCACTGGTCGCATCATCAACGCGAACCGGAGAGAAAACGGCGATCTTTTCAAGGCCCTCAAGGGCGGCAAC ACCAACTTCGGCATCGTCACCAAAATCGACCTCGCATCTTTCGATTTCAAAGATTTTTGGGACGCAGAGGTCGTC ATGTCTCTCAATGGCCCTCAGGCAACCCGCTCGCAGATGCTCGACATCATCAGCAAAACGACGGTCGACTTCGTG GCCAACAATGCCAAAGACGTGGCCAACGGCCTACACGTCGCCGTCACCTCTGTGGCTGCCAACAACTCCGAGCTG GCCATCATGGGCATCACGAACGTGAAGAACGTTGCGAATCCCCCTGCCGCCAAGCCCATTCGCAGTATTCCGAAC CAGCGGGCCAACGTGGAGCGTCATGGTAGGATTGCCGACTATGTCCACTCCATTAGCGGCTTTCAGCCCAGGGGC TTCCGGTGAGTGCAAGCCTCTAGATGAAGTTTTTTCGTCTATCGATATGTTTCCTCTTTTTTTTTCCCCTTTCTT TTTCTTCTTTCTTTCTTTTTCGTTTCCTTCCTTTCGATTTCTGACTTATTCCATAGCCAAGTCACGGCCAGCGTG ACGATTAAAAACGACTACAAGACGCTGCGGGAAATCTGGGATGCCTCAAACGCCGTCTACAGGTCACTGCCGCAA AATGACAAAATAGACTGGATAGTCGAGCTCTACCCTCAGCCCAGAGTCCAACAATCCTATTCCTTGAAATACGGA GGCAACAGTCTCGGACTAGCCAACGTCAAGCACGACCAGATCGGTAAGAAAGACAAAGCCTCCCGCGAAAAAAAA ACCACCATCAAACGCGTCTATCTAACTGAAAAAAAAAAGTCATCTGGCTCGTCTCACGCTGGAGAGACCCGAGCG TCGATGGCATCATGGAAGTCGCCCAAAAACAGTTCGTCGCCGCCGTCGAGGCCGTTGCGAACAAGCACGGCACCC TCTCCCCTTTCGTCTACGTCAATTTCGCCGGCTCGTTCCAGAATCCTCTCTGCGGCTACGGCGCCGAGAGCGTGG CTCATCTCAAGAAGATGGCTAGGAAGTATGACCCTCAGGGTGTCTTCCAGCATCTGATGAGTGGCGGCTTCAAGG TTAGCCAGGCGAACTGTGGCCGGCGACAGTGA |