© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4111 |
| Gene name | |
| Location | scaffold_321:20044..23148 |
| Strand | - |
| Gene length (bp) | 3104 |
| Transcript length (bp) | 2982 |
| Coding sequence length (bp) | 2979 |
| Protein length (aa) | 993 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13374 | TPR_10 | Tetratricopeptide repeat | 1.1E-04 | 443 | 476 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.575 | 0.2797 | 0.1444 | 0.396 | 0.2974 | 0.0687 | 0.2529 | 0.4443 | 0.3925 | 0.0745 |
| Orthofinder run ID | 4 |
| Orthogroup | 5581 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4111 MANNDNLVVSPQATTITTTTRPWRPPPPLVSYPHPCKHHGGVSIAYCMVINTAGPSSPAETPTQSVPPHGSLLHL RSNGDAGRVVNQGSALWDFSKCAANAHSQVEGLAQEVSMLTGSLTSIEKTLMRFQSQSPSRALADQDVHHQCRLA LRNCELTLDELKELVDAIKKTAASNRLWRFKTAIDLSTHSGKLDEFRAKMNRSNAALQTMLHTLIVFACPPSFSL SLQSNLSQNRIVADLRRLNTSIEKVRKLSMQRERHDDADDRARQNLRHLAQAARNFHSVASVQGGEGSSVTASSW RRDAVMTTSSVVVGDDMSSLRRMRLHDYVYSNVTEVEDDDDGLLSQMPLVQVLEDFALAHMKRRRFHQAADFLQQ AILQQKKKAVDDDDDDMLIRLQTRLALCHLFQGDRDNVVATVTKLATAAAAADENDDQSSFGLDVYNLMHALALT YLAEYDFDGAEKWCRRALRAKEKLLGMSHAETLETLGLLAWIYKMSDNLVMKEVIRRIMPIGFRYSHPPDELAFI ARHTRLLPIELASWNSFIIPDVVVELDGQEAIHHTTTTTTTTTTTMACVETQVKTAVSRSEKLLVDTSKEVVIRP EITVDDDECAAKPQGSDIKRRLAQMLRTASIRRAVSDPPPMMAEAGKASVSGEMMKGWLRSRRESVLRKSKSLSR HARLSGSVVERPVVASVEADLETLDAWLAKTCRRRLSVDTDYQLEHVLDNNNNNNNKQPSQLMSFPVFELEGIHR PEPEEEEEEEEDTETVTIIGTHNRRHQGTSSDSSSSSTTTDADRSLHSRVSQPVPRDTLVNNKTEPVREQTQCPA AEEEEEDDDDEEEEEEEDVEQARRAAVALACVLVMMMCCSGASYERMEPQFIINQQHKEADEDRHQLQRHPEGDD ASGAELHDAIITIHDDTNQTEHTNHHSGGVVMTCTKHPEQTPPDDDNESSESNNHHQLSNAAKCLETTSGVKRAF SWLKHDDVEYMSRVCCAP |
| Coding | >Ophio5|4111 ATGGCCAACAACGATAACCTCGTCGTCTCCCCTCAAGCCACCACCATCACCACCACCACCAGACCGTGGAGGCCT CCTCCGCCACTGGTGTCTTACCCCCATCCTTGCAAGCATCATGGGGGTGTGTCGATCGCATATTGCATGGTTATA AATACTGCCGGTCCATCTTCCCCAGCTGAAACCCCAACCCAATCGGTACCGCCCCATGGATCCCTTCTCCATCTG CGTAGCAACGGCGACGCTGGCCGAGTTGTCAATCAAGGATCAGCTCTATGGGACTTCAGCAAATGCGCAGCCAAC GCCCACTCCCAGGTCGAGGGCCTCGCCCAAGAGGTCTCGATGCTGACCGGATCCCTGACGTCGATCGAGAAGACT CTCATGAGGTTTCAGTCTCAATCTCCGTCCCGCGCACTGGCCGACCAAGATGTTCATCATCAGTGTCGCTTGGCT CTGAGAAACTGCGAGCTCACGTTGGATGAACTGAAGGAGCTCGTCGATGCTATCAAGAAGACGGCTGCTTCCAAC CGGTTGTGGAGATTCAAGACCGCCATCGACCTTAGCACGCACAGCGGTAAGCTGGACGAGTTCCGGGCAAAGATG AACCGGTCCAATGCCGCTCTGCAGACGATGCTTCATACCCTCATCGTGTTTGCTTGTCCCCCTTCTTTCTCGCTT TCTCTCCAAAGCAATCTATCCCAAAACCGCATCGTGGCCGACTTAAGGAGACTCAACACGTCCATCGAGAAAGTA CGGAAGCTTTCGATGCAGCGTGAAAGACACGACGATGCCGATGACAGAGCGAGGCAAAACCTCCGTCATCTCGCC CAGGCAGCCCGCAACTTTCACTCCGTCGCCAGCGTTCAGGGGGGGGAAGGCAGCAGCGTGACGGCGTCGTCGTGG CGTCGAGACGCTGTCATGACTACTAGTAGTGTCGTCGTGGGGGACGACATGAGTTCCCTCCGAAGGATGAGACTG CATGATTATGTCTACAGCAACGTGACGGAAGTTGAGGATGACGATGATGGCCTCTTGTCGCAGATGCCTTTGGTT CAAGTGCTCGAAGACTTCGCCCTGGCGCACATGAAGAGGCGAAGATTCCATCAAGCCGCCGACTTCCTCCAACAA GCCATCCTACAACAAAAGAAGAAAGCCGTCGACGACGACGACGACGACATGCTCATCCGCCTACAGACACGACTC GCCCTATGTCACCTCTTCCAAGGCGACAGAGACAACGTCGTAGCGACGGTGACCAAGCTAGCAACAGCAGCAGCA GCAGCAGACGAAAACGACGACCAATCATCATTCGGCCTCGACGTCTATAACCTCATGCACGCCCTGGCTTTGACC TATCTGGCCGAGTACGACTTCGACGGAGCCGAGAAGTGGTGTAGACGCGCGCTGCGGGCCAAGGAGAAGCTTTTG GGCATGAGTCACGCCGAGACGTTGGAGACGCTGGGGCTGTTGGCTTGGATCTATAAGATGAGCGATAACCTGGTG ATGAAGGAGGTTATTCGACGCATCATGCCCATCGGTTTCCGTTATTCCCATCCTCCGGACGAGCTGGCTTTTATA GCTCGTCATACCCGTCTTCTCCCTATCGAATTGGCTTCCTGGAACTCTTTCATCATCCCCGACGTCGTCGTCGAG CTAGACGGCCAAGAGGCCATACACCACACCACCACCACCACCACCACCACCACCACCACCATGGCCTGTGTGGAA ACCCAAGTCAAGACAGCAGTATCCCGAAGCGAGAAGCTCCTCGTCGACACCAGCAAAGAGGTCGTCATCAGGCCG GAAATCACCGTCGACGACGACGAATGCGCGGCCAAGCCTCAAGGTTCCGACATCAAGCGCCGTCTCGCTCAGATG CTCCGTACCGCTTCTATCCGACGGGCTGTCTCCGACCCTCCCCCGATGATGGCCGAGGCCGGAAAGGCTTCCGTT TCGGGTGAGATGATGAAGGGCTGGCTGCGCTCGAGGCGTGAATCCGTCCTCCGCAAGTCCAAGTCGTTGTCTCGA CACGCTCGCCTGTCTGGCTCCGTTGTCGAGAGGCCGGTGGTGGCCAGTGTCGAGGCTGACTTGGAGACTCTGGAC GCTTGGCTTGCCAAGACTTGTCGTCGTCGTCTCTCCGTAGACACGGACTATCAACTGGAACATGTCCTTGACAAC AACAACAACAACAACAACAAACAACCCAGTCAGCTTATGTCCTTTCCCGTCTTCGAATTGGAAGGAATTCATCGA CCCGAGCCAGAGGAGGAGGAGGAGGAGGAGGAGGACACCGAGACGGTCACCATCATCGGCACTCACAACCGCCGA CATCAAGGCACCTCATCCGACTCCTCCTCCTCCTCGACGACGACAGACGCCGACCGGAGTCTCCATTCCAGAGTT TCGCAGCCGGTCCCACGAGACACTTTAGTGAACAATAAGACGGAACCGGTCCGTGAACAGACGCAGTGCCCAGCG GCTGAAGAAGAAGAGGAAGATGATGATGATGAAGAAGAAGAAGAGGAAGAAGATGTCGAGCAGGCCAGAAGAGCG GCCGTTGCGTTAGCGTGTGTCCTGGTCATGATGATGTGTTGTAGCGGTGCATCGTACGAACGCATGGAGCCCCAA TTCATCATCAACCAACAACACAAAGAAGCAGACGAGGATAGACATCAACTCCAACGACACCCCGAAGGCGACGAC GCATCAGGCGCAGAACTTCACGACGCCATCATCACCATCCACGACGACACGAACCAGACAGAACACACCAACCAC CACTCGGGAGGAGTAGTCATGACTTGCACCAAACACCCCGAGCAAACTCCACCAGATGACGACAACGAAAGCTCC GAATCCAACAACCACCATCAACTAAGCAACGCAGCAAAATGCCTCGAAACGACCAGCGGCGTGAAACGAGCCTTC TCGTGGCTGAAACACGACGACGTCGAATACATGTCCCGAGTCTGTTGTGCCCCT |
| Transcript | >Ophio5|4111 ATGGCCAACAACGATAACCTCGTCGTCTCCCCTCAAGCCACCACCATCACCACCACCACCAGACCGTGGAGGCCT CCTCCGCCACTGGTGTCTTACCCCCATCCTTGCAAGCATCATGGGGGTGTGTCGATCGCATATTGCATGGTTATA AATACTGCCGGTCCATCTTCCCCAGCTGAAACCCCAACCCAATCGGTACCGCCCCATGGATCCCTTCTCCATCTG CGTAGCAACGGCGACGCTGGCCGAGTTGTCAATCAAGGATCAGCTCTATGGGACTTCAGCAAATGCGCAGCCAAC GCCCACTCCCAGGTCGAGGGCCTCGCCCAAGAGGTCTCGATGCTGACCGGATCCCTGACGTCGATCGAGAAGACT CTCATGAGGTTTCAGTCTCAATCTCCGTCCCGCGCACTGGCCGACCAAGATGTTCATCATCAGTGTCGCTTGGCT CTGAGAAACTGCGAGCTCACGTTGGATGAACTGAAGGAGCTCGTCGATGCTATCAAGAAGACGGCTGCTTCCAAC CGGTTGTGGAGATTCAAGACCGCCATCGACCTTAGCACGCACAGCGGTAAGCTGGACGAGTTCCGGGCAAAGATG AACCGGTCCAATGCCGCTCTGCAGACGATGCTTCATACCCTCATCGTGTTTGCTTGTCCCCCTTCTTTCTCGCTT TCTCTCCAAAGCAATCTATCCCAAAACCGCATCGTGGCCGACTTAAGGAGACTCAACACGTCCATCGAGAAAGTA CGGAAGCTTTCGATGCAGCGTGAAAGACACGACGATGCCGATGACAGAGCGAGGCAAAACCTCCGTCATCTCGCC CAGGCAGCCCGCAACTTTCACTCCGTCGCCAGCGTTCAGGGGGGGGAAGGCAGCAGCGTGACGGCGTCGTCGTGG CGTCGAGACGCTGTCATGACTACTAGTAGTGTCGTCGTGGGGGACGACATGAGTTCCCTCCGAAGGATGAGACTG CATGATTATGTCTACAGCAACGTGACGGAAGTTGAGGATGACGATGATGGCCTCTTGTCGCAGATGCCTTTGGTT CAAGTGCTCGAAGACTTCGCCCTGGCGCACATGAAGAGGCGAAGATTCCATCAAGCCGCCGACTTCCTCCAACAA GCCATCCTACAACAAAAGAAGAAAGCCGTCGACGACGACGACGACGACATGCTCATCCGCCTACAGACACGACTC GCCCTATGTCACCTCTTCCAAGGCGACAGAGACAACGTCGTAGCGACGGTGACCAAGCTAGCAACAGCAGCAGCA GCAGCAGACGAAAACGACGACCAATCATCATTCGGCCTCGACGTCTATAACCTCATGCACGCCCTGGCTTTGACC TATCTGGCCGAGTACGACTTCGACGGAGCCGAGAAGTGGTGTAGACGCGCGCTGCGGGCCAAGGAGAAGCTTTTG GGCATGAGTCACGCCGAGACGTTGGAGACGCTGGGGCTGTTGGCTTGGATCTATAAGATGAGCGATAACCTGGTG ATGAAGGAGGTTATTCGACGCATCATGCCCATCGGTTTCCGTTATTCCCATCCTCCGGACGAGCTGGCTTTTATA GCTCGTCATACCCGTCTTCTCCCTATCGAATTGGCTTCCTGGAACTCTTTCATCATCCCCGACGTCGTCGTCGAG CTAGACGGCCAAGAGGCCATACACCACACCACCACCACCACCACCACCACCACCACCACCATGGCCTGTGTGGAA ACCCAAGTCAAGACAGCAGTATCCCGAAGCGAGAAGCTCCTCGTCGACACCAGCAAAGAGGTCGTCATCAGGCCG GAAATCACCGTCGACGACGACGAATGCGCGGCCAAGCCTCAAGGTTCCGACATCAAGCGCCGTCTCGCTCAGATG CTCCGTACCGCTTCTATCCGACGGGCTGTCTCCGACCCTCCCCCGATGATGGCCGAGGCCGGAAAGGCTTCCGTT TCGGGTGAGATGATGAAGGGCTGGCTGCGCTCGAGGCGTGAATCCGTCCTCCGCAAGTCCAAGTCGTTGTCTCGA CACGCTCGCCTGTCTGGCTCCGTTGTCGAGAGGCCGGTGGTGGCCAGTGTCGAGGCTGACTTGGAGACTCTGGAC GCTTGGCTTGCCAAGACTTGTCGTCGTCGTCTCTCCGTAGACACGGACTATCAACTGGAACATGTCCTTGACAAC AACAACAACAACAACAACAAACAACCCAGTCAGCTTATGTCCTTTCCCGTCTTCGAATTGGAAGGAATTCATCGA CCCGAGCCAGAGGAGGAGGAGGAGGAGGAGGAGGACACCGAGACGGTCACCATCATCGGCACTCACAACCGCCGA CATCAAGGCACCTCATCCGACTCCTCCTCCTCCTCGACGACGACAGACGCCGACCGGAGTCTCCATTCCAGAGTT TCGCAGCCGGTCCCACGAGACACTTTAGTGAACAATAAGACGGAACCGGTCCGTGAACAGACGCAGTGCCCAGCG GCTGAAGAAGAAGAGGAAGATGATGATGATGAAGAAGAAGAAGAGGAAGAAGATGTCGAGCAGGCCAGAAGAGCG GCCGTTGCGTTAGCGTGTGTCCTGGTCATGATGATGTGTTGTAGCGGTGCATCGTACGAACGCATGGAGCCCCAA TTCATCATCAACCAACAACACAAAGAAGCAGACGAGGATAGACATCAACTCCAACGACACCCCGAAGGCGACGAC GCATCAGGCGCAGAACTTCACGACGCCATCATCACCATCCACGACGACACGAACCAGACAGAACACACCAACCAC CACTCGGGAGGAGTAGTCATGACTTGCACCAAACACCCCGAGCAAACTCCACCAGATGACGACAACGAAAGCTCC GAATCCAACAACCACCATCAACTAAGCAACGCAGCAAAATGCCTCGAAACGACCAGCGGCGTGAAACGAGCCTTC TCGTGGCTGAAACACGACGACGTCGAATACATGTCCCGAGTCTGTTGTGCCCCTTGA |
| Gene | >Ophio5|4111 ATGGCCAACAACGATAACCTCGTCGTCTCCCCTCAAGCCACCACCATCACCACCACCACCAGACCGTGGAGGCCT CCTCCGCCACTGGTGTCTTACCCCCATCCTTGCAAGCATCATGGGGGTGTGTCGATCGCATATTGCATGGTTATA AATACTGCCGGTCCATCTTCCCCAGCTGAAACCCCAACCCAATCGGTACCGCCCCATGGATCCCTTCTCCATCTG CGTAGCAACGGCGACGCTGGCCGAGTTGTCAATCAAGGTAAAAGAAGGCTTTTGCAAAAGAAAAAAAAAAGAATC CGTCCTTAACCTTCCAAACTAGATAGGATCAGCTCTATGGGACTTCAGCAAATGCGCAGCCAACGCCCACTCCCA GGTCGAGGGCCTCGCCCAAGAGGTCTCGATGCTGACCGGATCCCTGACGTCGATCGAGAAGACTCTCATGAGGTT TCAGTCTCAATCTCCGTCCCGCGCACTGGCCGACCAAGATGTTCATCATCAGTGTCGCTTGGCTCTGAGAAACTG CGAGCTCACGTTGGATGAACTGAAGGAGCTCGTCGATGCTATCAAGAAGACGGCTGCTTCCAACCGGTTGTGGAG ATTCAAGACCGCCATCGACCTTAGCACGCACAGCGGTAAGCTGGACGAGTTCCGGGCAAAGATGAACCGGTCCAA TGCCGCTCTGCAGACGATGCTTCATACCCTCATCGTGTTTGCTTGTCCCCCTTCTTTGTCTTGTCTCGTCTTGCC AGTAACCCAGGCTAAGCCAAAGAAATCAACCTTCCTTCAGCTCGCTTTCTCTCCAAAGCAATCTATCCCAAAACC GCATCGTGGCCGACTTAAGGAGACTCAACACGTCCATCGAGAAAGTACGGAAGCTTTCGATGCAGCGTGAAAGAC ACGACGATGCCGATGACAGAGCGAGGCAAAACCTCCGTCATCTCGCCCAGGCAGCCCGCAACTTTCACTCCGTCG CCAGCGTTCAGGGGGGGGAAGGCAGCAGCGTGACGGCGTCGTCGTGGCGTCGAGACGCTGTCATGACTACTAGTA GTGTCGTCGTGGGGGACGACATGAGTTCCCTCCGAAGGATGAGACTGCATGATTATGTCTACAGCAACGTGACGG AAGTTGAGGATGACGATGATGGCCTCTTGTCGCAGATGCCTTTGGTTCAAGTGCTCGAAGACTTCGCCCTGGCGC ACATGAAGAGGCGAAGATTCCATCAAGCCGCCGACTTCCTCCAACAAGCCATCCTACAACAAAAGAAGAAAGCCG TCGACGACGACGACGACGACATGCTCATCCGCCTACAGACACGACTCGCCCTATGTCACCTCTTCCAAGGCGACA GAGACAACGTCGTAGCGACGGTGACCAAGCTAGCAACAGCAGCAGCAGCAGCAGACGAAAACGACGACCAATCAT CATTCGGCCTCGACGTCTATAACCTCATGCACGCCCTGGCTTTGACCTATCTGGCCGAGTACGACTTCGACGGAG CCGAGAAGTGGTGTAGACGCGCGCTGCGGGCCAAGGAGAAGCTTTTGGGCATGAGTCACGCCGAGACGTTGGAGA CGCTGGGGCTGTTGGCTTGGATCTATAAGATGAGCGATAACCTGGTGATGAAGGAGGTTATTCGACGCATCATGC CCATCGGTTTCCGTTATTCCCATCCTCCGGACGAGCTGGCTTTTATAGCTCGTCATACCCGTCTTCTCCCTATCG AATTGGCTTCCTGGAACTCTTTCATCATCCCCGACGTCGTCGTCGAGCTAGACGGCCAAGAGGCCATACACCACA CCACCACCACCACCACCACCACCACCACCACCATGGCCTGTGTGGAAACCCAAGTCAAGACAGCAGTATCCCGAA GCGAGAAGCTCCTCGTCGACACCAGCAAAGAGGTCGTCATCAGGCCGGAAATCACCGTCGACGACGACGAATGCG CGGCCAAGCCTCAAGGTTCCGACATCAAGCGCCGTCTCGCTCAGATGCTCCGTACCGCTTCTATCCGACGGGCTG TCTCCGACCCTCCCCCGATGATGGCCGAGGCCGGAAAGGCTTCCGTTTCGGGTGAGATGATGAAGGGCTGGCTGC GCTCGAGGCGTGAATCCGTCCTCCGCAAGTCCAAGTCGTTGTCTCGACACGCTCGCCTGTCTGGCTCCGTTGTCG AGAGGCCGGTGGTGGCCAGTGTCGAGGCTGACTTGGAGACTCTGGACGCTTGGCTTGCCAAGACTTGTCGTCGTC GTCTCTCCGTAGACACGGACTATCAACTGGAACATGTCCTTGACAACAACAACAACAACAACAACAAACAACCCA GTCAGCTTATGTCCTTTCCCGTCTTCGAATTGGAAGGAATTCATCGACCCGAGCCAGAGGAGGAGGAGGAGGAGG AGGAGGACACCGAGACGGTCACCATCATCGGCACTCACAACCGCCGACATCAAGGCACCTCATCCGACTCCTCCT CCTCCTCGACGACGACAGACGCCGACCGGAGTCTCCATTCCAGAGTTTCGCAGCCGGTCCCACGAGACACTTTAG TGAACAATAAGACGGAACCGGTCCGTGAACAGACGCAGTGCCCAGCGGCTGAAGAAGAAGAGGAAGATGATGATG ATGAAGAAGAAGAAGAGGAAGAAGATGTCGAGCAGGCCAGAAGAGCGGCCGTTGCGTTAGCGTGTGTCCTGGTCA TGATGATGTGTTGTAGCGGTGCATCGTACGAACGCATGGAGCCCCAATTCATCATCAACCAACAACACAAAGAAG CAGACGAGGATAGACATCAACTCCAACGACACCCCGAAGGCGACGACGCATCAGGCGCAGAACTTCACGACGCCA TCATCACCATCCACGACGACACGAACCAGACAGAACACACCAACCACCACTCGGGAGGAGTAGTCATGACTTGCA CCAAACACCCCGAGCAAACTCCACCAGATGACGACAACGAAAGCTCCGAATCCAACAACCACCATCAACTAAGCA ACGCAGCAAAATGCCTCGAAACGACCAGCGGCGTGAAACGAGCCTTCTCGTGGCTGAAACACGACGACGTCGAAT ACATGTCCCGAGTCTGTTGTGCCCCTTGA |