Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4056
Gene name
Locationscaffold_317:13652..14485
Strand+
Gene length (bp)833
Transcript length (bp)675
Coding sequence length (bp)672
Protein length (aa) 224

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 13 35 22
2 55 77 22
3 90 112 22
4 181 203 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4056
MPNKVFWTTLGADVIFLATGCLELGFCLIVRNLMFKQPKDGQEAVRNLIYQTFPIDAGIVNAAFIIFVAVFTAAG
LLSPVRLVLKASGYAIALCGLFTLCIGVALWVETLTIRDTFFPTYVAQEPQVQELIQTTFNCCGYINFTTPAFVT
DPTCPSPAAAALLRGCSVFISSFANTFIDNIFTAVFGMVGMDALLILAISCLLKDRKERERYRHIDDKSGFRQF
Coding >Ophio5|4056
ATGCCCAACAAGGTCTTCTGGACGACGCTCGGCGCCGACGTCATCTTCTTGGCTACCGGCTGTCTCGAGCTGGGA
TTCTGCCTCATCGTTCGCAACCTCATGTTCAAGCAGCCCAAGGACGGTCAGGAGGCGGTTCGGAACCTCATCTAT
CAGACTTTTCCCATTGACGCTGGCATCGTCAACGCTGCCTTCATCATCTTCGTTGCCGTCTTTACCGCTGCCGGT
CTTCTCTCCCCCGTCCGCCTCGTTCTCAAGGCTAGCGGTTATGCTATCGCTCTCTGTGGCCTCTTCACTCTCTGC
ATCGGTGTCGCCCTTTGGGTTGAGACCTTGACCATTCGCGATACTTTTTTCCCAACTTATGTCGCTCAGGAGCCC
CAGGTGCAGGAACTTATCCAGACGACTTTCAACTGCTGCGGCTACATCAACTTCACCACCCCGGCCTTCGTCACC
GATCCTACCTGTCCGAGTCCCGCCGCCGCTGCCCTCCTCCGCGGCTGCTCCGTCTTCATCTCCAGCTTTGCCAAC
ACCTTCATCGACAACATCTTTACCGCCGTCTTCGGCATGGTCGGCATGGACGCCCTCCTCATCCTCGCCATCTCC
TGCCTCCTCAAGGATCGCAAGGAGCGCGAGCGTTACCGCCACATCGACGACAAGTCCGGCTTCCGCCAGTTC
Transcript >Ophio5|4056
ATGCCCAACAAGGTCTTCTGGACGACGCTCGGCGCCGACGTCATCTTCTTGGCTACCGGCTGTCTCGAGCTGGGA
TTCTGCCTCATCGTTCGCAACCTCATGTTCAAGCAGCCCAAGGACGGTCAGGAGGCGGTTCGGAACCTCATCTAT
CAGACTTTTCCCATTGACGCTGGCATCGTCAACGCTGCCTTCATCATCTTCGTTGCCGTCTTTACCGCTGCCGGT
CTTCTCTCCCCCGTCCGCCTCGTTCTCAAGGCTAGCGGTTATGCTATCGCTCTCTGTGGCCTCTTCACTCTCTGC
ATCGGTGTCGCCCTTTGGGTTGAGACCTTGACCATTCGCGATACTTTTTTCCCAACTTATGTCGCTCAGGAGCCC
CAGGTGCAGGAACTTATCCAGACGACTTTCAACTGCTGCGGCTACATCAACTTCACCACCCCGGCCTTCGTCACC
GATCCTACCTGTCCGAGTCCCGCCGCCGCTGCCCTCCTCCGCGGCTGCTCCGTCTTCATCTCCAGCTTTGCCAAC
ACCTTCATCGACAACATCTTTACCGCCGTCTTCGGCATGGTCGGCATGGACGCCCTCCTCATCCTCGCCATCTCC
TGCCTCCTCAAGGATCGCAAGGAGCGCGAGCGTTACCGCCACATCGACGACAAGTCCGGCTTCCGCCAGTTCTAG
Gene >Ophio5|4056
ATGCCCAACAAGGTCTTCTGGACGACGCTCGGCGCCGACGTCATCTTCTTGGCTACCGGCTGTCTCGAGCTGGGA
TTCTGCCTCATCGTTCGCAACCTCATGTTCAAGCAGCCCAAGGACGGTCAGGAGGCGGTTCGGAACCTCATCTAT
CAGACTTTTCCCATTGACGCTGGCATCGTCAACGCTGCCTTCATCATCTTCGTTGCCGTCTTTACCGCTGCCGGT
CTTCTCTCCCCCGTCCGCCTCGTTCTCAAGGCTAGCGGTTATGCTATCGCTCTCTGTGGCCTCTTCACTCTCTGC
ATCGGTGTCGCCCTTTGGGTTGAGACCTTGACCATTCGCGATACTTTTTTCCCAACTTATGTCGCTCAGGAGCCC
CAGGTGCAGGAACTTATCCAGACGACTGTACGTTTCTTTCCCTTCCCATGCAACAATGAATTGCATTCGTCTTGT
TCTCCTTTTTTTCTGACTTGTCCCAGTTCAACTGCTGCGGCTACATCAACTTCACCACCCCGGCCTTCGTCACCG
ATCCTACCTGTCCGAGTCCCGCCGCCGCTGCCCTCCTCCGCGGCTGCTCCGTCTTCATCTCCAGCTTTGCCAACA
CCTTCATCGACAACATCTTTACCGCCGTCTTCGGCATGGTCGGTATGCCAATCTTTTTTCTTTTTTTTTCCCTCG
GCCCCGTCTTCTCTTTTTCTCTTCCCCCACCCCTCCTCTGACTTCTTCCAGGCATGGACGCCCTCCTCATCCTCG
CCATCTCCTGCCTCCTCAAGGATCGCAAGGAGCGCGAGCGTTACCGCCACATCGACGACAAGTCCGGCTTCCGCC
AGTTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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