Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4045
Gene name
Locationscaffold_316:12338..14367
Strand+
Gene length (bp)2029
Transcript length (bp)1914
Coding sequence length (bp)1911
Protein length (aa) 637

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05536 Neurochondrin Neurochondrin 2.8E-85 19 520

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O74447|YCG2_SCHPO Uncharacterized protein C16C4.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC16C4.02c PE=1 SV=1 305 568 1.0E-10

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 38.43 21.00 55.86
CcL In ants, during behavior modification 60.97 33.06 88.87
CcD In ants, recently dead 41.69 22.84 60.54

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.036104 yes
SC16a CcD 0.757490 no
CcL CcD 0.090250 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4045
MDKPQPAQKPSADPPPVDAASLANIQSLLQARDDTQRFVGLALLKSVLDNSQLLRQDEAVIKSLWESLSAKFLDR
LLRTGSNPANQHASDMLDLAVSVLHTFAALLPESSRADAKFTARIPGLVGTILCSSDETIGLTLQLLHTLVSLPQ
GARILVNCQDLSPLTENAPSHPLVLDILGFAWLNGMADAENRLVLSQKIDATLKSLSSSFTGTDAVIFLEFLGTF
LRQADPAVLPKDPKWLSKVCGYIHSLAMSRPTPEARSAYTNAAASLVQIYPNQAPKLLFTDDRSADKAPAYLLMN
LLLIDIRSSAPTLLGQLNARDSAATTRRLASAFDVVCIFVGFLARFLDGDCQDDLVMSPDSLLKIRKGISDTMSV
TIEYLRDRWDASVAGAMGLHPDARVGNAETATGSHRTLAWDSIANSADDDPLVLSAVRTLALWLREDENELLRKE
ATGLTDMFMDLYRGSAPGKLDFRSPILVALEALVELDKGRDLLLRHDGWQILCKDLTDILNDTSTTNDKDGTSRG
IEIVRVLVQVVEQESTGTAEAWMDLITTVAAWDVPVQERPLEAKEFQLAVLELCCALLLGASNGMRNRYRHSFKA
VAGIATRMRPLMACDGRLSGPMQDVLETLNGNVSKSD
Coding >Ophio5|4045
ATGGACAAGCCACAGCCGGCTCAAAAGCCCAGCGCTGATCCGCCACCCGTCGATGCCGCCAGCTTGGCCAACATC
CAGAGCCTCCTACAGGCACGCGACGACACGCAGAGATTCGTCGGTCTGGCTCTGCTCAAGTCTGTTCTCGACAAC
TCGCAGCTACTTCGCCAGGACGAAGCCGTCATCAAGTCGCTATGGGAGAGCCTGTCTGCCAAGTTCTTAGACAGG
CTGCTACGCACAGGGTCCAACCCGGCAAATCAACACGCAAGCGACATGCTGGACCTGGCCGTCTCCGTCTTGCAC
ACATTTGCTGCCCTACTGCCCGAGAGTTCGCGGGCAGATGCCAAGTTTACTGCCAGAATACCTGGCCTGGTCGGA
ACCATCCTGTGCAGTTCCGACGAGACTATCGGCCTCACCCTGCAGCTCCTTCATACACTTGTCAGCTTGCCTCAA
GGGGCTCGCATTCTCGTCAACTGCCAGGATCTGAGCCCCCTCACCGAGAATGCGCCATCGCATCCCCTCGTCCTA
GACATCCTGGGCTTTGCATGGCTCAATGGCATGGCGGACGCCGAGAATAGACTTGTGCTTTCACAAAAAATAGAC
GCAACCCTGAAAAGCCTCTCCTCCTCTTTCACCGGCACGGATGCCGTCATATTCCTTGAGTTTCTTGGAACTTTC
CTGCGACAGGCGGATCCTGCTGTATTGCCCAAAGACCCCAAGTGGCTCAGTAAAGTATGCGGTTACATTCACAGT
CTTGCCATGAGTCGACCGACTCCTGAAGCAAGGTCTGCCTACACGAATGCTGCCGCGTCTCTTGTCCAGATCTAT
CCAAATCAGGCCCCGAAGCTCCTATTCACGGATGATCGTAGCGCAGACAAAGCTCCCGCCTATCTTCTCATGAAT
CTCCTACTCATCGATATCCGCTCATCCGCGCCGACGCTTCTGGGCCAGCTCAACGCGCGAGACAGCGCTGCAACG
ACAAGACGATTGGCGTCGGCATTCGACGTCGTCTGCATCTTTGTGGGATTCCTGGCTCGATTTCTCGACGGTGAC
TGTCAAGATGACTTGGTCATGTCTCCGGACAGTCTCCTCAAGATTCGAAAGGGTATATCAGACACAATGTCGGTA
ACGATTGAGTATCTTCGAGATCGGTGGGATGCCTCGGTCGCCGGGGCCATGGGTTTGCATCCCGACGCCCGAGTT
GGCAACGCCGAGACGGCAACCGGCTCACACCGAACCTTGGCATGGGACTCGATTGCGAACTCGGCCGATGACGAT
CCGTTGGTACTGTCCGCTGTCCGCACGCTGGCGCTCTGGCTGAGGGAGGATGAAAACGAGCTGTTGCGCAAGGAG
GCGACGGGATTAACGGACATGTTTATGGATCTCTACCGGGGGAGCGCGCCGGGAAAGCTCGACTTCAGGTCGCCC
ATACTCGTTGCACTGGAGGCCTTGGTCGAACTGGATAAGGGGCGGGACCTCCTCCTCCGCCATGATGGCTGGCAG
ATCCTTTGCAAAGATCTGACTGACATACTCAACGACACATCAACCACCAACGACAAGGACGGGACCTCTCGCGGC
ATCGAAATCGTCCGTGTCCTCGTTCAGGTCGTGGAACAGGAGTCAACCGGTACGGCAGAGGCGTGGATGGATCTG
ATTACCACCGTTGCCGCCTGGGACGTACCCGTTCAGGAGCGGCCGCTCGAGGCGAAAGAGTTTCAACTTGCGGTG
TTGGAATTGTGTTGCGCGCTGCTGCTGGGGGCGAGCAACGGTATGCGAAACAGATATAGGCACTCGTTCAAAGCA
GTCGCGGGTATCGCAACGCGGATGAGGCCCTTGATGGCGTGTGATGGTCGCCTGAGCGGGCCGATGCAGGATGTC
CTGGAGACCTTGAACGGCAACGTCTCGAAGAGCGAC
Transcript >Ophio5|4045
ATGGACAAGCCACAGCCGGCTCAAAAGCCCAGCGCTGATCCGCCACCCGTCGATGCCGCCAGCTTGGCCAACATC
CAGAGCCTCCTACAGGCACGCGACGACACGCAGAGATTCGTCGGTCTGGCTCTGCTCAAGTCTGTTCTCGACAAC
TCGCAGCTACTTCGCCAGGACGAAGCCGTCATCAAGTCGCTATGGGAGAGCCTGTCTGCCAAGTTCTTAGACAGG
CTGCTACGCACAGGGTCCAACCCGGCAAATCAACACGCAAGCGACATGCTGGACCTGGCCGTCTCCGTCTTGCAC
ACATTTGCTGCCCTACTGCCCGAGAGTTCGCGGGCAGATGCCAAGTTTACTGCCAGAATACCTGGCCTGGTCGGA
ACCATCCTGTGCAGTTCCGACGAGACTATCGGCCTCACCCTGCAGCTCCTTCATACACTTGTCAGCTTGCCTCAA
GGGGCTCGCATTCTCGTCAACTGCCAGGATCTGAGCCCCCTCACCGAGAATGCGCCATCGCATCCCCTCGTCCTA
GACATCCTGGGCTTTGCATGGCTCAATGGCATGGCGGACGCCGAGAATAGACTTGTGCTTTCACAAAAAATAGAC
GCAACCCTGAAAAGCCTCTCCTCCTCTTTCACCGGCACGGATGCCGTCATATTCCTTGAGTTTCTTGGAACTTTC
CTGCGACAGGCGGATCCTGCTGTATTGCCCAAAGACCCCAAGTGGCTCAGTAAAGTATGCGGTTACATTCACAGT
CTTGCCATGAGTCGACCGACTCCTGAAGCAAGGTCTGCCTACACGAATGCTGCCGCGTCTCTTGTCCAGATCTAT
CCAAATCAGGCCCCGAAGCTCCTATTCACGGATGATCGTAGCGCAGACAAAGCTCCCGCCTATCTTCTCATGAAT
CTCCTACTCATCGATATCCGCTCATCCGCGCCGACGCTTCTGGGCCAGCTCAACGCGCGAGACAGCGCTGCAACG
ACAAGACGATTGGCGTCGGCATTCGACGTCGTCTGCATCTTTGTGGGATTCCTGGCTCGATTTCTCGACGGTGAC
TGTCAAGATGACTTGGTCATGTCTCCGGACAGTCTCCTCAAGATTCGAAAGGGTATATCAGACACAATGTCGGTA
ACGATTGAGTATCTTCGAGATCGGTGGGATGCCTCGGTCGCCGGGGCCATGGGTTTGCATCCCGACGCCCGAGTT
GGCAACGCCGAGACGGCAACCGGCTCACACCGAACCTTGGCATGGGACTCGATTGCGAACTCGGCCGATGACGAT
CCGTTGGTACTGTCCGCTGTCCGCACGCTGGCGCTCTGGCTGAGGGAGGATGAAAACGAGCTGTTGCGCAAGGAG
GCGACGGGATTAACGGACATGTTTATGGATCTCTACCGGGGGAGCGCGCCGGGAAAGCTCGACTTCAGGTCGCCC
ATACTCGTTGCACTGGAGGCCTTGGTCGAACTGGATAAGGGGCGGGACCTCCTCCTCCGCCATGATGGCTGGCAG
ATCCTTTGCAAAGATCTGACTGACATACTCAACGACACATCAACCACCAACGACAAGGACGGGACCTCTCGCGGC
ATCGAAATCGTCCGTGTCCTCGTTCAGGTCGTGGAACAGGAGTCAACCGGTACGGCAGAGGCGTGGATGGATCTG
ATTACCACCGTTGCCGCCTGGGACGTACCCGTTCAGGAGCGGCCGCTCGAGGCGAAAGAGTTTCAACTTGCGGTG
TTGGAATTGTGTTGCGCGCTGCTGCTGGGGGCGAGCAACGGTATGCGAAACAGATATAGGCACTCGTTCAAAGCA
GTCGCGGGTATCGCAACGCGGATGAGGCCCTTGATGGCGTGTGATGGTCGCCTGAGCGGGCCGATGCAGGATGTC
CTGGAGACCTTGAACGGCAACGTCTCGAAGAGCGACTGA
Gene >Ophio5|4045
ATGGACAAGCCACAGCCGGCTCAAAAGCCCAGCGCTGATCCGCCACCCGTCGATGCCGCCAGCTTGGCCAACATC
CAGAGCCTCCTACAGGCACGCGACGACACGCAGAGATTCGTCGGTCTGGCTCTGCTCAAGTCTGTTCTCGACAAC
TCGCAGCTACTTCGCCAGGACGAAGCCGTCATCAAGTCGCTATGGGAGAGCCTGTCTGCCAAGTTCTTAGACAGG
CTGCTACGCACAGGGTCCAACCCGGCAAATCAACACGCAAGCGACATGCTGGACCTGGCCGTCTCCGTCTTGCAC
ACATTTGCTGCCCTACTGCCCGAGAGTTCGCGGGCAGATGCCAAGTTTACTGCCAGAATACCTGGCCTGGTCGGA
ACCATCCTGTGCAGGTGAGAAGTCTCCAATCAGCCCTTTTGCTCTCTCCGCCCTGACCTTGAGCGCACAGTTCCG
ACGAGACTATCGGCCTCACCCTGCAGCTCCTTCATACACTTGTCAGCTTGCCTCAAGGGGCTCGCATTCTCGTCA
ACTGCCAGGATCTGAGCCCCCTCACCGAGAATGCGCCATCGCATCCCCTCGTCCTAGACATCCTGGGCTTTGCAT
GGCTCAATGGCATGGCGGACGCCGAGAATAGACTTGTGCTTTCACAAAAAATAGACGCAACCCTGAAAAGCCTCT
CCTCCTCTTTCACCGGCACGGATGCCGTCATATTCCTTGAGTTTCTTGGAACTTTCCTGCGACAGGCGGATCCTG
CTGTAGGTCGACGCACCCACATACAATTCGCTTTGTCTACAGCATGGCTAAGGCTGCCCAGGTATTGCCCAAAGA
CCCCAAGTGGCTCAGTAAAGTATGCGGTTACATTCACAGTCTTGCCATGAGTCGACCGACTCCTGAAGCAAGGTC
TGCCTACACGAATGCTGCCGCGTCTCTTGTCCAGATCTATCCAAATCAGGCCCCGAAGCTCCTATTCACGGATGA
TCGTAGCGCAGACAAAGCTCCCGCCTATCTTCTCATGAATCTCCTACTCATCGATATCCGCTCATCCGCGCCGAC
GCTTCTGGGCCAGCTCAACGCGCGAGACAGCGCTGCAACGACAAGACGATTGGCGTCGGCATTCGACGTCGTCTG
CATCTTTGTGGGATTCCTGGCTCGATTTCTCGACGGTGACTGTCAAGATGACTTGGTCATGTCTCCGGACAGTCT
CCTCAAGATTCGAAAGGGTATATCAGACACAATGTCGGTAACGATTGAGTATCTTCGAGATCGGTGGGATGCCTC
GGTCGCCGGGGCCATGGGTTTGCATCCCGACGCCCGAGTTGGCAACGCCGAGACGGCAACCGGCTCACACCGAAC
CTTGGCATGGGACTCGATTGCGAACTCGGCCGATGACGATCCGTTGGTACTGTCCGCTGTCCGCACGCTGGCGCT
CTGGCTGAGGGAGGATGAAAACGAGCTGTTGCGCAAGGAGGCGACGGGATTAACGGACATGTTTATGGATCTCTA
CCGGGGGAGCGCGCCGGGAAAGCTCGACTTCAGGTCGCCCATACTCGTTGCACTGGAGGCCTTGGTCGAACTGGA
TAAGGGGCGGGACCTCCTCCTCCGCCATGATGGCTGGCAGATCCTTTGCAAAGATCTGACTGACATACTCAACGA
CACATCAACCACCAACGACAAGGACGGGACCTCTCGCGGCATCGAAATCGTCCGTGTCCTCGTTCAGGTCGTGGA
ACAGGAGTCAACCGGTACGGCAGAGGCGTGGATGGATCTGATTACCACCGTTGCCGCCTGGGACGTACCCGTTCA
GGAGCGGCCGCTCGAGGCGAAAGAGTTTCAACTTGCGGTGTTGGAATTGTGTTGCGCGCTGCTGCTGGGGGCGAG
CAACGGTATGCGAAACAGATATAGGCACTCGTTCAAAGCAGTCGCGGGTATCGCAACGCGGATGAGGCCCTTGAT
GGCGTGTGATGGTCGCCTGAGCGGGCCGATGCAGGATGTCCTGGAGACCTTGAACGGCAACGTCTCGAAGAGCGA
CTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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