Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|4040
Gene name
Location	scaffold_315:22771..23488
Strand	-
Gene length (bp)	717
Transcript length (bp)	717
Coding sequence length (bp)	714
Protein length (aa)	238

Overview

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF06687	SUR7	SUR7/PalI family	2.5E-18	11	188

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q51MB1\|PALI_MAGO7	pH-response regulator protein palI/RIM9 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RIM9 PE=3 SV=1	51	206	3.0E-07
sp\|Q7Z8R5\|PALI_YARLI	pH-response regulator protein palI/RIM9 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RIM9 PE=3 SV=3	13	224	1.0E-06

GO

GO Term	Description	Terminal node
GO:0005886	plasma membrane	Yes
GO:0110165	cellular anatomical entity	No
GO:0005575	cellular_component	No
GO:0016020	membrane	No

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cell membrane\|Lysosome/Vacuole	Signal peptide\|Transmembrane domain	0.1753	0.1002	0.2284	0.7448	0.1416	0.0168	0.239	0.662	0.5498	0.0098

SignalP

(None)

Transmembrane Domains

Domain #	Start	End	Length
1	7	29	22
2	107	129	22
3	136	158	22
4	173	195	22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	2255.41	766.67	3744.16
CcL	In ants, during behavior modification	324.38	61.42	587.33
CcD	In ants, recently dead	153.36	83.45	223.27

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.028174	yes

Orthologs

Orthofinder run ID	4
Orthogroup	5123
Change Orthofinder run

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|5263
Ophiocordyceps australis map64 (Brazil)	OphauB2\|7212
Ophiocordyceps camponoti-floridani	Ophcf2\|05495
Ophiocordyceps camponoti-rufipedis	Ophun1\|566
Ophiocordyceps kimflemingae	Ophio5\|4040 (this protein)
Ophiocordyceps subramaniannii	Hirsu2\|3400

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|4040 MGFGTFVHHIGTLLLLVATVLLIVVDVTAPVVDYLAIMRVHLGQNVQGSQVTFGSWGYCHRGIRDTDQCSNRHIG YNPAQVMHEIDGTDFSSAAENTSKALTRVMILHPVATGLCFLAFLLCLSAGIVGSILASAFSLLAFIVTIVAMAC DFVAFGIIKHDVNANGHSRAHWASGIWCILAAAIFTLVASLIVLLTCCASRAKKRRHLGQDHKETVDTTTVVGAR QPFWKRLPLKPSS
Coding	>Ophio5\|4040 ATGGGCTTCGGCACCTTTGTCCATCACATCGGCACCCTGTTGCTACTCGTCGCCACCGTCCTTCTCATCGTCGTC GATGTCACCGCCCCCGTCGTCGACTACCTCGCCATCATGCGCGTCCATCTCGGTCAGAATGTACAGGGCTCGCAG GTGACGTTTGGCAGCTGGGGTTATTGCCATCGGGGCATTCGCGATACCGATCAGTGCTCCAATCGACACATCGGT TATAATCCGGCCCAGGTCATGCACGAAATCGACGGCACCGACTTCAGTTCGGCCGCCGAGAATACGTCCAAGGCT CTCACTCGTGTCATGATCTTGCATCCCGTCGCCACCGGCCTCTGCTTCCTCGCCTTTCTCCTCTGCCTCAGCGCC GGCATCGTCGGCTCCATCCTGGCTTCGGCCTTTTCCCTACTGGCCTTTATCGTCACCATCGTCGCCATGGCCTGT GATTTCGTCGCCTTTGGCATCATCAAACACGACGTCAACGCAAACGGTCACAGTCGTGCTCACTGGGCCTCGGGC ATCTGGTGTATCCTCGCCGCCGCCATCTTCACCCTCGTCGCCTCCCTCATCGTCCTGCTCACCTGCTGCGCCAGC CGAGCCAAGAAGCGTCGCCATCTTGGTCAAGATCACAAGGAGACCGTCGATACGACGACCGTCGTCGGTGCGCGT CAGCCATTCTGGAAACGCTTGCCTCTGAAGCCATCGTCG
Transcript	>Ophio5\|4040 ATGGGCTTCGGCACCTTTGTCCATCACATCGGCACCCTGTTGCTACTCGTCGCCACCGTCCTTCTCATCGTCGTC GATGTCACCGCCCCCGTCGTCGACTACCTCGCCATCATGCGCGTCCATCTCGGTCAGAATGTACAGGGCTCGCAG GTGACGTTTGGCAGCTGGGGTTATTGCCATCGGGGCATTCGCGATACCGATCAGTGCTCCAATCGACACATCGGT TATAATCCGGCCCAGGTCATGCACGAAATCGACGGCACCGACTTCAGTTCGGCCGCCGAGAATACGTCCAAGGCT CTCACTCGTGTCATGATCTTGCATCCCGTCGCCACCGGCCTCTGCTTCCTCGCCTTTCTCCTCTGCCTCAGCGCC GGCATCGTCGGCTCCATCCTGGCTTCGGCCTTTTCCCTACTGGCCTTTATCGTCACCATCGTCGCCATGGCCTGT GATTTCGTCGCCTTTGGCATCATCAAACACGACGTCAACGCAAACGGTCACAGTCGTGCTCACTGGGCCTCGGGC ATCTGGTGTATCCTCGCCGCCGCCATCTTCACCCTCGTCGCCTCCCTCATCGTCCTGCTCACCTGCTGCGCCAGC CGAGCCAAGAAGCGTCGCCATCTTGGTCAAGATCACAAGGAGACCGTCGATACGACGACCGTCGTCGGTGCGCGT CAGCCATTCTGGAAACGCTTGCCTCTGAAGCCATCGTCGTAG
Gene	>Ophio5\|4040 ATGGGCTTCGGCACCTTTGTCCATCACATCGGCACCCTGTTGCTACTCGTCGCCACCGTCCTTCTCATCGTCGTC GATGTCACCGCCCCCGTCGTCGACTACCTCGCCATCATGCGCGTCCATCTCGGTCAGAATGTACAGGGCTCGCAG GTGACGTTTGGCAGCTGGGGTTATTGCCATCGGGGCATTCGCGATACCGATCAGTGCTCCAATCGACACATCGGT TATAATCCGGCCCAGGTCATGCACGAAATCGACGGCACCGACTTCAGTTCGGCCGCCGAGAATACGTCCAAGGCT CTCACTCGTGTCATGATCTTGCATCCCGTCGCCACCGGCCTCTGCTTCCTCGCCTTTCTCCTCTGCCTCAGCGCC GGCATCGTCGGCTCCATCCTGGCTTCGGCCTTTTCCCTACTGGCCTTTATCGTCACCATCGTCGCCATGGCCTGT GATTTCGTCGCCTTTGGCATCATCAAACACGACGTCAACGCAAACGGTCACAGTCGTGCTCACTGGGCCTCGGGC ATCTGGTGTATCCTCGCCGCCGCCATCTTCACCCTCGTCGCCTCCCTCATCGTCCTGCTCACCTGCTGCGCCAGC CGAGCCAAGAAGCGTCGCCATCTTGGTCAAGATCACAAGGAGACCGTCGATACGACGACCGTCGTCGGTGCGCGT CAGCCATTCTGGAAACGCTTGCCTCTGAAGCCATCGTCGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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