Protein ID | Ophio5|4038 |
Gene name | |
Location | scaffold_315:18539..20255 |
Strand | + |
Gene length (bp) | 1716 |
Transcript length (bp) | 1716 |
Coding sequence length (bp) | 1713 |
Protein length (aa) | 571 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|G4SLH0|TTN1_CAEEL | Titin homolog OS=Caenorhabditis elegans GN=ttn-1 PE=1 SV=2 | 365 | 523 | 7.0E-06 |
sp|G4SLH0|TTN1_CAEEL | Titin homolog OS=Caenorhabditis elegans GN=ttn-1 PE=1 SV=2 | 358 | 486 | 1.0E-05 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 18 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 548 | 570 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 3.64 | 1.02 | 6.26 |
CcL | In ants, during behavior modification | 0.53 | 0.00 | 1.12 |
CcD | In ants, recently dead | 1.03 | 0.06 | 2.00 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.000770 | yes |
SC16a | CcD | 0.004461 | yes |
CcL | CcD | 1.000000 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|4038 MQTKAIALLALMGSAAAQKQVTDKVSGEKPTSKVLDAPGSATTEKPTKPLGIKGRPFAVSTTTTTTTTTRIRYIV VPANLTTAKTTATKPTKAATTTTTKTKIGNLTGMTRAPTVWKPSKVTETSKVAEPSQSVKPKGTIWKRAVVDGEG ESNNEQSRSVRINTNNDEESSSNSNSNSNSNSNSNSNSNSNSNSNSNDQQLQQQQQQQQQQLNQIRENLLLAQQQ QQQLDNRNSNNDNNTNKKIDNDRNRVIVLERGGRGDGPGPGRGHGHGPIVHSGNCRGCRDNDRCQGGHCHGRSNC HERCRKYIVAHGHHHHHDGHVHRGHFREHRFRGQRQCREKGCEKRKECKDKECKKEVKEVKPAPAPAAPSASVAP APAPAPAPAPAPAPAPAVPAPAAPCVAVPCVLAPAPPAAAPAPPAAAPAPPAENQPAPAAPAPAPPAAAPAPPAA APAPPAAAPAPPAAAPAPPAAAPAPPAEAAPAPPAEAAPAPAPGSGGGSPPAGSAPSPGSGTQPSSPAESGPAPG SSSPPATYQPPSSPPATVINGASMMTTGSGLAVAVAVAVVANLFVL |
Coding | >Ophio5|4038 ATGCAAACCAAGGCGATTGCCTTGCTGGCCCTGATGGGGTCAGCGGCGGCTCAGAAGCAGGTGACGGACAAGGTG TCGGGCGAGAAGCCGACGTCGAAAGTACTCGACGCACCGGGTTCGGCCACGACGGAGAAGCCGACGAAGCCTTTG GGCATCAAGGGTCGGCCGTTTGCTGTGTCGACGACGACGACGACGACGACGACGACGCGAATTCGCTATATCGTG GTGCCGGCCAATCTGACGACGGCGAAGACGACGGCGACTAAGCCGACGAAGGCTGCGACTACGACTACGACTAAG ACCAAGATTGGCAACTTGACGGGGATGACGAGAGCACCGACCGTGTGGAAGCCGTCCAAGGTGACGGAGACGTCC AAGGTCGCCGAGCCTTCCCAGAGCGTCAAGCCGAAGGGGACGATTTGGAAGCGAGCTGTGGTCGACGGTGAGGGA GAGAGCAACAATGAACAGTCCAGGTCTGTCCGTATCAACACCAATAACGATGAGGAGAGCAGCAGCAACAGCAAC AGCAACAGCAACAGCAACAGTAACAGCAACAGTAACAGCAACAGCAACAGCAACAGCAACAGCAACGACCAGCAG TTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCAACCAGATCCGGGAGAACCTCTTGCTCGCCCAGCAGCAG CAGCAGCAGTTGGACAACAGGAACAGCAACAACGATAACAACACCAACAAAAAGATTGACAACGACAGGAACCGA GTCATCGTGCTCGAGCGCGGCGGCCGAGGCGACGGTCCCGGTCCCGGCCGCGGCCACGGCCACGGCCCCATCGTC CACAGCGGCAACTGCCGCGGCTGCCGCGACAACGACCGCTGCCAGGGAGGCCACTGCCACGGGCGGTCCAACTGC CACGAGCGCTGCCGCAAGTACATCGTCGCCCACGGACACCACCACCACCACGACGGACACGTCCACCGCGGACAC TTCCGCGAGCATCGCTTCCGAGGACAGCGTCAGTGCCGCGAAAAGGGGTGCGAGAAGAGGAAGGAGTGCAAGGAC AAGGAGTGCAAGAAGGAGGTCAAGGAGGTCAAGCCCGCGCCCGCTCCGGCCGCTCCTTCGGCTTCGGTTGCGCCC GCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCGGCTGTGCCCGCTCCGGCTGCGCCGTGT GTGGCTGTGCCGTGTGTCCTTGCTCCGGCGCCTCCCGCTGCTGCCCCGGCGCCTCCCGCTGCTGCCCCGGCCCCT CCGGCTGAGAACCAGCCTGCCCCGGCTGCGCCTGCTCCCGCTCCCCCGGCCGCAGCGCCCGCTCCCCCGGCCGCA GCTCCTGCTCCCCCGGCCGCGGCTCCCGCACCCCCAGCTGCGGCTCCCGCTCCTCCGGCTGCGGCTCCGGCTCCC CCTGCCGAAGCGGCTCCGGCTCCCCCGGCCGAAGCAGCTCCGGCTCCAGCTCCGGGCTCGGGTGGTGGCTCGCCT CCCGCGGGATCGGCCCCTTCGCCAGGCTCGGGCACGCAGCCCTCTTCGCCTGCGGAGTCGGGACCGGCGCCCGGA TCGAGCTCGCCCCCGGCGACGTACCAGCCGCCGTCGTCGCCTCCTGCGACGGTGATCAACGGCGCGTCGATGATG ACGACGGGTTCCGGCCTGGCCGTCGCCGTTGCCGTTGCCGTCGTGGCCAACCTGTTCGTCCTG |
Transcript | >Ophio5|4038 ATGCAAACCAAGGCGATTGCCTTGCTGGCCCTGATGGGGTCAGCGGCGGCTCAGAAGCAGGTGACGGACAAGGTG TCGGGCGAGAAGCCGACGTCGAAAGTACTCGACGCACCGGGTTCGGCCACGACGGAGAAGCCGACGAAGCCTTTG GGCATCAAGGGTCGGCCGTTTGCTGTGTCGACGACGACGACGACGACGACGACGACGCGAATTCGCTATATCGTG GTGCCGGCCAATCTGACGACGGCGAAGACGACGGCGACTAAGCCGACGAAGGCTGCGACTACGACTACGACTAAG ACCAAGATTGGCAACTTGACGGGGATGACGAGAGCACCGACCGTGTGGAAGCCGTCCAAGGTGACGGAGACGTCC AAGGTCGCCGAGCCTTCCCAGAGCGTCAAGCCGAAGGGGACGATTTGGAAGCGAGCTGTGGTCGACGGTGAGGGA GAGAGCAACAATGAACAGTCCAGGTCTGTCCGTATCAACACCAATAACGATGAGGAGAGCAGCAGCAACAGCAAC AGCAACAGCAACAGCAACAGTAACAGCAACAGTAACAGCAACAGCAACAGCAACAGCAACAGCAACGACCAGCAG TTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCAACCAGATCCGGGAGAACCTCTTGCTCGCCCAGCAGCAG CAGCAGCAGTTGGACAACAGGAACAGCAACAACGATAACAACACCAACAAAAAGATTGACAACGACAGGAACCGA GTCATCGTGCTCGAGCGCGGCGGCCGAGGCGACGGTCCCGGTCCCGGCCGCGGCCACGGCCACGGCCCCATCGTC CACAGCGGCAACTGCCGCGGCTGCCGCGACAACGACCGCTGCCAGGGAGGCCACTGCCACGGGCGGTCCAACTGC CACGAGCGCTGCCGCAAGTACATCGTCGCCCACGGACACCACCACCACCACGACGGACACGTCCACCGCGGACAC TTCCGCGAGCATCGCTTCCGAGGACAGCGTCAGTGCCGCGAAAAGGGGTGCGAGAAGAGGAAGGAGTGCAAGGAC AAGGAGTGCAAGAAGGAGGTCAAGGAGGTCAAGCCCGCGCCCGCTCCGGCCGCTCCTTCGGCTTCGGTTGCGCCC GCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCGGCTGTGCCCGCTCCGGCTGCGCCGTGT GTGGCTGTGCCGTGTGTCCTTGCTCCGGCGCCTCCCGCTGCTGCCCCGGCGCCTCCCGCTGCTGCCCCGGCCCCT CCGGCTGAGAACCAGCCTGCCCCGGCTGCGCCTGCTCCCGCTCCCCCGGCCGCAGCGCCCGCTCCCCCGGCCGCA GCTCCTGCTCCCCCGGCCGCGGCTCCCGCACCCCCAGCTGCGGCTCCCGCTCCTCCGGCTGCGGCTCCGGCTCCC CCTGCCGAAGCGGCTCCGGCTCCCCCGGCCGAAGCAGCTCCGGCTCCAGCTCCGGGCTCGGGTGGTGGCTCGCCT CCCGCGGGATCGGCCCCTTCGCCAGGCTCGGGCACGCAGCCCTCTTCGCCTGCGGAGTCGGGACCGGCGCCCGGA TCGAGCTCGCCCCCGGCGACGTACCAGCCGCCGTCGTCGCCTCCTGCGACGGTGATCAACGGCGCGTCGATGATG ACGACGGGTTCCGGCCTGGCCGTCGCCGTTGCCGTTGCCGTCGTGGCCAACCTGTTCGTCCTGTGA |
Gene | >Ophio5|4038 ATGCAAACCAAGGCGATTGCCTTGCTGGCCCTGATGGGGTCAGCGGCGGCTCAGAAGCAGGTGACGGACAAGGTG TCGGGCGAGAAGCCGACGTCGAAAGTACTCGACGCACCGGGTTCGGCCACGACGGAGAAGCCGACGAAGCCTTTG GGCATCAAGGGTCGGCCGTTTGCTGTGTCGACGACGACGACGACGACGACGACGACGCGAATTCGCTATATCGTG GTGCCGGCCAATCTGACGACGGCGAAGACGACGGCGACTAAGCCGACGAAGGCTGCGACTACGACTACGACTAAG ACCAAGATTGGCAACTTGACGGGGATGACGAGAGCACCGACCGTGTGGAAGCCGTCCAAGGTGACGGAGACGTCC AAGGTCGCCGAGCCTTCCCAGAGCGTCAAGCCGAAGGGGACGATTTGGAAGCGAGCTGTGGTCGACGGTGAGGGA GAGAGCAACAATGAACAGTCCAGGTCTGTCCGTATCAACACCAATAACGATGAGGAGAGCAGCAGCAACAGCAAC AGCAACAGCAACAGCAACAGTAACAGCAACAGTAACAGCAACAGCAACAGCAACAGCAACAGCAACGACCAGCAG TTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCAACCAGATCCGGGAGAACCTCTTGCTCGCCCAGCAGCAG CAGCAGCAGTTGGACAACAGGAACAGCAACAACGATAACAACACCAACAAAAAGATTGACAACGACAGGAACCGA GTCATCGTGCTCGAGCGCGGCGGCCGAGGCGACGGTCCCGGTCCCGGCCGCGGCCACGGCCACGGCCCCATCGTC CACAGCGGCAACTGCCGCGGCTGCCGCGACAACGACCGCTGCCAGGGAGGCCACTGCCACGGGCGGTCCAACTGC CACGAGCGCTGCCGCAAGTACATCGTCGCCCACGGACACCACCACCACCACGACGGACACGTCCACCGCGGACAC TTCCGCGAGCATCGCTTCCGAGGACAGCGTCAGTGCCGCGAAAAGGGGTGCGAGAAGAGGAAGGAGTGCAAGGAC AAGGAGTGCAAGAAGGAGGTCAAGGAGGTCAAGCCCGCGCCCGCTCCGGCCGCTCCTTCGGCTTCGGTTGCGCCC GCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCGGCTGTGCCCGCTCCGGCTGCGCCGTGT GTGGCTGTGCCGTGTGTCCTTGCTCCGGCGCCTCCCGCTGCTGCCCCGGCGCCTCCCGCTGCTGCCCCGGCCCCT CCGGCTGAGAACCAGCCTGCCCCGGCTGCGCCTGCTCCCGCTCCCCCGGCCGCAGCGCCCGCTCCCCCGGCCGCA GCTCCTGCTCCCCCGGCCGCGGCTCCCGCACCCCCAGCTGCGGCTCCCGCTCCTCCGGCTGCGGCTCCGGCTCCC CCTGCCGAAGCGGCTCCGGCTCCCCCGGCCGAAGCAGCTCCGGCTCCAGCTCCGGGCTCGGGTGGTGGCTCGCCT CCCGCGGGATCGGCCCCTTCGCCAGGCTCGGGCACGCAGCCCTCTTCGCCTGCGGAGTCGGGACCGGCGCCCGGA TCGAGCTCGCCCCCGGCGACGTACCAGCCGCCGTCGTCGCCTCCTGCGACGGTGATCAACGGCGCGTCGATGATG ACGACGGGTTCCGGCCTGGCCGTCGCCGTTGCCGTTGCCGTCGTGGCCAACCTGTTCGTCCTGTGA |