© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|403 |
| Gene name | |
| Location | scaffold_11:5506..6582 |
| Strand | + |
| Gene length (bp) | 1076 |
| Transcript length (bp) | 966 |
| Coding sequence length (bp) | 963 |
| Protein length (aa) | 321 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 44 | 63 | 19 |
| 3 | 110 | 129 | 19 |
| 4 | 166 | 188 | 22 |
| 5 | 223 | 245 | 22 |
| 6 | 260 | 279 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 14.45 | 5.29 | 23.60 |
| CcL | In ants, during behavior modification | 81.30 | 43.57 | 119.03 |
| CcD | In ants, recently dead | 113.66 | 60.17 | 167.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.155946 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|403 MPACPVQGNADLYGLGIRIGLYIQMITVQLSGILSASFSVDDHIGQGTIVFVLSTVIILVRLINASIGNETSTGG DDDPALEAVEIFPVLTLLLVQTGVCRVTSRNRLTMLVWVAELVGLAALYNYFWWRGMDLLPRSCQDDKAFFFARV SIWGWYRSLNKAFGVLAAIGVALTLVTYCGSVIYEVVFCVVRFVLRRTNDGSSSSSSSSGTNSNTAGVKEKPGLT LGSVDLLANVGAIVYVEVSLRWNSITGVHSLDSPGQFMPLVIALGQFLSVFYSAAKEMLRRRANDDFSGDEDEAA AECHHHDQKTLPLAQAHTATT |
| Coding | >Ophio5|403 ATGCCCGCCTGCCCTGTCCAAGGTAACGCCGACCTCTACGGCCTCGGCATCCGCATCGGCCTCTATATCCAAATG ATCACCGTTCAGCTCTCCGGAATCCTCAGTGCTAGCTTCAGCGTCGACGACCACATCGGCCAAGGCACCATCGTC TTTGTCCTCTCCACCGTCATCATCCTCGTCCGCCTCATCAATGCCAGCATCGGCAACGAGACCAGCACCGGCGGC GACGACGATCCCGCCCTCGAGGCCGTCGAGATCTTTCCCGTCTTAACCCTTCTTCTGGTACAGACCGGCGTGTGT CGCGTCACGTCCAGGAATCGTCTCACCATGCTCGTCTGGGTCGCCGAGCTCGTCGGACTGGCCGCCTTGTACAAC TATTTCTGGTGGCGCGGCATGGACTTGCTGCCGCGGTCGTGCCAGGACGACAAGGCTTTTTTCTTCGCGCGTGTT AGTATCTGGGGCTGGTATCGTAGCCTGAACAAGGCGTTTGGAGTACTTGCTGCCATCGGCGTTGCCTTGACGCTA GTCACCTACTGCGGATCCGTCATATACGAGGTCGTCTTCTGCGTCGTCCGCTTCGTGCTGAGACGCACCAACGAC GGCAGCAGCAGCAGCAGCAGCAGCAGCGGGACCAACAGCAACACCGCCGGGGTCAAGGAAAAGCCCGGCCTGACC CTCGGCTCCGTCGACCTGCTGGCCAACGTCGGCGCCATCGTCTACGTCGAAGTCTCGCTGCGTTGGAACAGCATC ACGGGTGTGCACTCGCTCGACAGCCCGGGCCAATTCATGCCCCTGGTCATCGCCCTGGGCCAGTTCCTGTCCGTC TTCTACTCCGCCGCCAAGGAGATGCTCCGGCGACGCGCCAACGACGACTTCTCGGGAGACGAAGACGAGGCTGCG GCCGAGTGTCACCACCACGATCAAAAGACGCTGCCTCTCGCCCAAGCACATACTGCCACGACA |
| Transcript | >Ophio5|403 ATGCCCGCCTGCCCTGTCCAAGGTAACGCCGACCTCTACGGCCTCGGCATCCGCATCGGCCTCTATATCCAAATG ATCACCGTTCAGCTCTCCGGAATCCTCAGTGCTAGCTTCAGCGTCGACGACCACATCGGCCAAGGCACCATCGTC TTTGTCCTCTCCACCGTCATCATCCTCGTCCGCCTCATCAATGCCAGCATCGGCAACGAGACCAGCACCGGCGGC GACGACGATCCCGCCCTCGAGGCCGTCGAGATCTTTCCCGTCTTAACCCTTCTTCTGGTACAGACCGGCGTGTGT CGCGTCACGTCCAGGAATCGTCTCACCATGCTCGTCTGGGTCGCCGAGCTCGTCGGACTGGCCGCCTTGTACAAC TATTTCTGGTGGCGCGGCATGGACTTGCTGCCGCGGTCGTGCCAGGACGACAAGGCTTTTTTCTTCGCGCGTGTT AGTATCTGGGGCTGGTATCGTAGCCTGAACAAGGCGTTTGGAGTACTTGCTGCCATCGGCGTTGCCTTGACGCTA GTCACCTACTGCGGATCCGTCATATACGAGGTCGTCTTCTGCGTCGTCCGCTTCGTGCTGAGACGCACCAACGAC GGCAGCAGCAGCAGCAGCAGCAGCAGCGGGACCAACAGCAACACCGCCGGGGTCAAGGAAAAGCCCGGCCTGACC CTCGGCTCCGTCGACCTGCTGGCCAACGTCGGCGCCATCGTCTACGTCGAAGTCTCGCTGCGTTGGAACAGCATC ACGGGTGTGCACTCGCTCGACAGCCCGGGCCAATTCATGCCCCTGGTCATCGCCCTGGGCCAGTTCCTGTCCGTC TTCTACTCCGCCGCCAAGGAGATGCTCCGGCGACGCGCCAACGACGACTTCTCGGGAGACGAAGACGAGGCTGCG GCCGAGTGTCACCACCACGATCAAAAGACGCTGCCTCTCGCCCAAGCACATACTGCCACGACATGA |
| Gene | >Ophio5|403 ATGCCCGCCTGCCCTGTCCAAGGTAACGCCGACCTCTACGGCCTCGGCATCCGCATCGGCCTCTATATCCAAATG ATCACCGTTCAGCTCTCCGGAATCCTCAGTGCTAGCTTCAGCGTCGACGACCACATCGGCCAAGGCACCATCGTC TTTGTCCTCTCCACCGTCATCATCCTCGTCCGCCTCATCAATGCCAGCATCGGCAACGAGACCAGCACCGGCGGC GACGACGATCCCGCCCTCGAGGCCGTCGAGATCTTTCCCGTCTTAACCCTTCTTCTGGTACAGACCGGCGTGTGT CGCGTCACGTCCAGGAATCGTCTCACCATGCTCGTCTGGGTCGCCGAGCTCGTCGGACTGGCCGCCTTGTACAAC TATTTCTGGTGGCGCGGCATGGACTTGCTGCCGCGGTCGTGCCAGGACGACAAGGCTTTTTTCTTCGCGCGTGTT AGTATCTGGGGCTGGTATCGTAGCCTGAACAAGGCGTTTGGAGTACTTGCTGCCATCGGCGTTGCCTTGACGCTA GTCACCTACTGCGGATGTGAGTTGTTGGTCAGAAAAGGGGGGCGGAATCCGTCTGACCAAACCGTCTAGCCGTCA TATACGAGGTCGTCTTCTGCGTCGTCCGCTTCGTGCTGAGACGCACCAACGACGGCAGCAGCAGCAGCAGCAGCA GCAGCGGGACCAACAGCAACACCGCCGGGGTCAAGGAAAAGCCCGGCCTGACCCTCGGCTCCGTCGACCTGCTGG CCAACGTCGGCGCCATCGTCTACGTCGAAGTCTCGCTGCGTTGGAACAGCATCACGGGTGTGCACTCGCTCGACA GCCCGGGCCAATTCATGCCCCTGGTCATCGCCCTGGGCCAGTTCCTGTCCGTCTTCTACTCCGCCGCCAAGGAGA TGCTCCGGCGACGCGCCAACGACGACTTCTCGGGAGACGAAGACGGTGAGGATGCCGGAACTGTATCCCGTCTCC TTGTCGCCTTTGCTGACGATGATATAGAGGCTGCGGCCGAGTGTCACCACCACGATCAAAAGACGCTGCCTCTCG CCCAAGCACATACTGCCACGACATGA |