Protein ID | Ophio5|403 |
Gene name | |
Location | scaffold_11:5506..6582 |
Strand | + |
Gene length (bp) | 1076 |
Transcript length (bp) | 966 |
Coding sequence length (bp) | 963 |
Protein length (aa) | 321 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Endoplasmic reticulum|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1628 | 0.1694 | 0.1436 | 0.5237 | 0.1571 | 0.0278 | 0.6448 | 0.6386 | 0.328 | 0.0055 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 12 | 34 | 22 |
2 | 44 | 63 | 19 |
3 | 110 | 129 | 19 |
4 | 166 | 188 | 22 |
5 | 223 | 245 | 22 |
6 | 260 | 279 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 3632 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|403 MPACPVQGNADLYGLGIRIGLYIQMITVQLSGILSASFSVDDHIGQGTIVFVLSTVIILVRLINASIGNETSTGG DDDPALEAVEIFPVLTLLLVQTGVCRVTSRNRLTMLVWVAELVGLAALYNYFWWRGMDLLPRSCQDDKAFFFARV SIWGWYRSLNKAFGVLAAIGVALTLVTYCGSVIYEVVFCVVRFVLRRTNDGSSSSSSSSGTNSNTAGVKEKPGLT LGSVDLLANVGAIVYVEVSLRWNSITGVHSLDSPGQFMPLVIALGQFLSVFYSAAKEMLRRRANDDFSGDEDEAA AECHHHDQKTLPLAQAHTATT |
Coding | >Ophio5|403 ATGCCCGCCTGCCCTGTCCAAGGTAACGCCGACCTCTACGGCCTCGGCATCCGCATCGGCCTCTATATCCAAATG ATCACCGTTCAGCTCTCCGGAATCCTCAGTGCTAGCTTCAGCGTCGACGACCACATCGGCCAAGGCACCATCGTC TTTGTCCTCTCCACCGTCATCATCCTCGTCCGCCTCATCAATGCCAGCATCGGCAACGAGACCAGCACCGGCGGC GACGACGATCCCGCCCTCGAGGCCGTCGAGATCTTTCCCGTCTTAACCCTTCTTCTGGTACAGACCGGCGTGTGT CGCGTCACGTCCAGGAATCGTCTCACCATGCTCGTCTGGGTCGCCGAGCTCGTCGGACTGGCCGCCTTGTACAAC TATTTCTGGTGGCGCGGCATGGACTTGCTGCCGCGGTCGTGCCAGGACGACAAGGCTTTTTTCTTCGCGCGTGTT AGTATCTGGGGCTGGTATCGTAGCCTGAACAAGGCGTTTGGAGTACTTGCTGCCATCGGCGTTGCCTTGACGCTA GTCACCTACTGCGGATCCGTCATATACGAGGTCGTCTTCTGCGTCGTCCGCTTCGTGCTGAGACGCACCAACGAC GGCAGCAGCAGCAGCAGCAGCAGCAGCGGGACCAACAGCAACACCGCCGGGGTCAAGGAAAAGCCCGGCCTGACC CTCGGCTCCGTCGACCTGCTGGCCAACGTCGGCGCCATCGTCTACGTCGAAGTCTCGCTGCGTTGGAACAGCATC ACGGGTGTGCACTCGCTCGACAGCCCGGGCCAATTCATGCCCCTGGTCATCGCCCTGGGCCAGTTCCTGTCCGTC TTCTACTCCGCCGCCAAGGAGATGCTCCGGCGACGCGCCAACGACGACTTCTCGGGAGACGAAGACGAGGCTGCG GCCGAGTGTCACCACCACGATCAAAAGACGCTGCCTCTCGCCCAAGCACATACTGCCACGACA |
Transcript | >Ophio5|403 ATGCCCGCCTGCCCTGTCCAAGGTAACGCCGACCTCTACGGCCTCGGCATCCGCATCGGCCTCTATATCCAAATG ATCACCGTTCAGCTCTCCGGAATCCTCAGTGCTAGCTTCAGCGTCGACGACCACATCGGCCAAGGCACCATCGTC TTTGTCCTCTCCACCGTCATCATCCTCGTCCGCCTCATCAATGCCAGCATCGGCAACGAGACCAGCACCGGCGGC GACGACGATCCCGCCCTCGAGGCCGTCGAGATCTTTCCCGTCTTAACCCTTCTTCTGGTACAGACCGGCGTGTGT CGCGTCACGTCCAGGAATCGTCTCACCATGCTCGTCTGGGTCGCCGAGCTCGTCGGACTGGCCGCCTTGTACAAC TATTTCTGGTGGCGCGGCATGGACTTGCTGCCGCGGTCGTGCCAGGACGACAAGGCTTTTTTCTTCGCGCGTGTT AGTATCTGGGGCTGGTATCGTAGCCTGAACAAGGCGTTTGGAGTACTTGCTGCCATCGGCGTTGCCTTGACGCTA GTCACCTACTGCGGATCCGTCATATACGAGGTCGTCTTCTGCGTCGTCCGCTTCGTGCTGAGACGCACCAACGAC GGCAGCAGCAGCAGCAGCAGCAGCAGCGGGACCAACAGCAACACCGCCGGGGTCAAGGAAAAGCCCGGCCTGACC CTCGGCTCCGTCGACCTGCTGGCCAACGTCGGCGCCATCGTCTACGTCGAAGTCTCGCTGCGTTGGAACAGCATC ACGGGTGTGCACTCGCTCGACAGCCCGGGCCAATTCATGCCCCTGGTCATCGCCCTGGGCCAGTTCCTGTCCGTC TTCTACTCCGCCGCCAAGGAGATGCTCCGGCGACGCGCCAACGACGACTTCTCGGGAGACGAAGACGAGGCTGCG GCCGAGTGTCACCACCACGATCAAAAGACGCTGCCTCTCGCCCAAGCACATACTGCCACGACATGA |
Gene | >Ophio5|403 ATGCCCGCCTGCCCTGTCCAAGGTAACGCCGACCTCTACGGCCTCGGCATCCGCATCGGCCTCTATATCCAAATG ATCACCGTTCAGCTCTCCGGAATCCTCAGTGCTAGCTTCAGCGTCGACGACCACATCGGCCAAGGCACCATCGTC TTTGTCCTCTCCACCGTCATCATCCTCGTCCGCCTCATCAATGCCAGCATCGGCAACGAGACCAGCACCGGCGGC GACGACGATCCCGCCCTCGAGGCCGTCGAGATCTTTCCCGTCTTAACCCTTCTTCTGGTACAGACCGGCGTGTGT CGCGTCACGTCCAGGAATCGTCTCACCATGCTCGTCTGGGTCGCCGAGCTCGTCGGACTGGCCGCCTTGTACAAC TATTTCTGGTGGCGCGGCATGGACTTGCTGCCGCGGTCGTGCCAGGACGACAAGGCTTTTTTCTTCGCGCGTGTT AGTATCTGGGGCTGGTATCGTAGCCTGAACAAGGCGTTTGGAGTACTTGCTGCCATCGGCGTTGCCTTGACGCTA GTCACCTACTGCGGATGTGAGTTGTTGGTCAGAAAAGGGGGGCGGAATCCGTCTGACCAAACCGTCTAGCCGTCA TATACGAGGTCGTCTTCTGCGTCGTCCGCTTCGTGCTGAGACGCACCAACGACGGCAGCAGCAGCAGCAGCAGCA GCAGCGGGACCAACAGCAACACCGCCGGGGTCAAGGAAAAGCCCGGCCTGACCCTCGGCTCCGTCGACCTGCTGG CCAACGTCGGCGCCATCGTCTACGTCGAAGTCTCGCTGCGTTGGAACAGCATCACGGGTGTGCACTCGCTCGACA GCCCGGGCCAATTCATGCCCCTGGTCATCGCCCTGGGCCAGTTCCTGTCCGTCTTCTACTCCGCCGCCAAGGAGA TGCTCCGGCGACGCGCCAACGACGACTTCTCGGGAGACGAAGACGGTGAGGATGCCGGAACTGTATCCCGTCTCC TTGTCGCCTTTGCTGACGATGATATAGAGGCTGCGGCCGAGTGTCACCACCACGATCAAAAGACGCTGCCTCTCG CCCAAGCACATACTGCCACGACATGA |