© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4010 |
| Gene name | |
| Location | scaffold_312:10334..12034 |
| Strand | + |
| Gene length (bp) | 1700 |
| Transcript length (bp) | 1386 |
| Coding sequence length (bp) | 1383 |
| Protein length (aa) | 461 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01148 | CTP_transf_1 | Cytidylyltransferase family | 3.3E-79 | 75 | 405 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P381|CDSH_SCHPO | Putative phosphatidate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13A2.03 PE=1 SV=1 | 27 | 451 | 2.0E-159 |
| sp|P38221|CDS1_YEAST | Phosphatidate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDS1 PE=1 SV=1 | 12 | 461 | 8.0E-136 |
| sp|O49639|CDS2_ARATH | Phosphatidate cytidylyltransferase 2 OS=Arabidopsis thaliana GN=CDS2 PE=1 SV=1 | 34 | 447 | 2.0E-106 |
| sp|O04928|CDS1_ARATH | Phosphatidate cytidylyltransferase 1 OS=Arabidopsis thaliana GN=CDS1 PE=1 SV=1 | 34 | 443 | 2.0E-104 |
| sp|Q92903|CDS1_HUMAN | Phosphatidate cytidylyltransferase 1 OS=Homo sapiens GN=CDS1 PE=2 SV=2 | 6 | 447 | 2.0E-99 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P381|CDSH_SCHPO | Putative phosphatidate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13A2.03 PE=1 SV=1 | 27 | 451 | 2.0E-159 |
| sp|P38221|CDS1_YEAST | Phosphatidate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDS1 PE=1 SV=1 | 12 | 461 | 8.0E-136 |
| sp|O49639|CDS2_ARATH | Phosphatidate cytidylyltransferase 2 OS=Arabidopsis thaliana GN=CDS2 PE=1 SV=1 | 34 | 447 | 2.0E-106 |
| sp|O04928|CDS1_ARATH | Phosphatidate cytidylyltransferase 1 OS=Arabidopsis thaliana GN=CDS1 PE=1 SV=1 | 34 | 443 | 2.0E-104 |
| sp|Q92903|CDS1_HUMAN | Phosphatidate cytidylyltransferase 1 OS=Homo sapiens GN=CDS1 PE=2 SV=2 | 6 | 447 | 2.0E-99 |
| sp|Q99L43|CDS2_MOUSE | Phosphatidate cytidylyltransferase 2 OS=Mus musculus GN=Cds2 PE=1 SV=1 | 1 | 450 | 4.0E-99 |
| sp|O35052|CDS1_RAT | Phosphatidate cytidylyltransferase 1 OS=Rattus norvegicus GN=Cds1 PE=1 SV=2 | 13 | 447 | 6.0E-99 |
| sp|A0JNC1|CDS2_BOVIN | Phosphatidate cytidylyltransferase 2 OS=Bos taurus GN=CDS2 PE=2 SV=1 | 1 | 447 | 9.0E-99 |
| sp|O95674|CDS2_HUMAN | Phosphatidate cytidylyltransferase 2 OS=Homo sapiens GN=CDS2 PE=1 SV=1 | 15 | 447 | 1.0E-98 |
| sp|P98191|CDS1_MOUSE | Phosphatidate cytidylyltransferase 1 OS=Mus musculus GN=Cds1 PE=1 SV=2 | 13 | 447 | 2.0E-98 |
| sp|Q91XU8|CDS2_RAT | Phosphatidate cytidylyltransferase 2 OS=Rattus norvegicus GN=Cds2 PE=1 SV=1 | 1 | 446 | 3.0E-98 |
| sp|O04940|CDS1_SOLTU | Phosphatidate cytidylyltransferase 1 OS=Solanum tuberosum GN=CDS1 PE=1 SV=1 | 18 | 438 | 1.0E-95 |
| sp|Q1PE48|CDS3_ARATH | Phosphatidate cytidylyltransferase 3 OS=Arabidopsis thaliana GN=CDS3 PE=1 SV=1 | 43 | 443 | 1.0E-91 |
| sp|P56079|CDSA_DROME | Phosphatidate cytidylyltransferase, photoreceptor-specific OS=Drosophila melanogaster GN=CdsA PE=1 SV=2 | 22 | 442 | 7.0E-90 |
| sp|P53439|CDSA_CAEEL | Phosphatidate cytidylyltransferase OS=Caenorhabditis elegans GN=cdgs-1 PE=3 SV=2 | 34 | 446 | 9.0E-89 |
| sp|Q55D90|CDSA_DICDI | Probable phosphatidate cytidylyltransferase OS=Dictyostelium discoideum GN=cdsA PE=3 SV=1 | 62 | 438 | 3.0E-76 |
| sp|Q95ZE3|CDS1_ENCCU | Phosphatidate cytidylyltransferase OS=Encephalitozoon cuniculi (strain GB-M1) GN=CDS1 PE=3 SV=1 | 172 | 438 | 5.0E-43 |
| sp|P75160|CDSA_MYCPN | Putative phosphatidate cytidylyltransferase OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=cdsA PE=3 SV=1 | 221 | 389 | 1.0E-08 |
| sp|Q92I31|CDSA_RICCN | Phosphatidate cytidylyltransferase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=cdsA PE=3 SV=1 | 240 | 389 | 6.0E-08 |
| sp|Q9ZDA8|CDSA_RICPR | Phosphatidate cytidylyltransferase OS=Rickettsia prowazekii (strain Madrid E) GN=cdsA PE=3 SV=1 | 240 | 389 | 2.0E-07 |
| sp|Q4ULR7|CDSA_RICFE | Phosphatidate cytidylyltransferase OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=cdsA PE=3 SV=1 | 240 | 389 | 7.0E-07 |
| sp|Q49433|CDSA_MYCGE | Putative phosphatidate cytidylyltransferase OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=cdsA PE=3 SV=1 | 221 | 387 | 5.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 88 | 110 | 22 |
| 2 | 131 | 153 | 22 |
| 3 | 168 | 187 | 19 |
| 4 | 200 | 219 | 19 |
| 5 | 229 | 251 | 22 |
| 6 | 264 | 286 | 22 |
| 7 | 342 | 364 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4010 MGRSSKRGVRFPHGAAANGQTSGSDGRRSSFSGSDDGSGSPSRTRSKPHAQLAPVQEKQATPEDEYQKKKQNFIT RTFWTFSMLAMFFAALFMGHIYIIVIVTAVQIVSFKEVIAISNVPSRARSIRSTKSINWYWLATTMYFFYGESVI YYFKHVVLVDRVLLPLGIHHRFISFILYVFGFVCFVGTLKAGNYKFQFTNFAWTHMALYLIVVQAHFVVNNVFEG MIWFFLPAALVITNDIFAYICGIAFGRTQLIKLSPKKTVEGFVGAWVMTVVFAILLVSVMIRSKYFICPVHDLGA NIFTGLECDPNPVFLPHTYHLPHLFFLPSNNTFSLTFAPMQLHAFVLATFASLIAPFGGFFASGLKRTFKIKDFG DSIPGHGGMTDRMDCQFIMGFFAYMYYHTFVEVHKVTMGSVLEKAITSLSPEEQVELVKSMARYLGNQGVVSEKV LNCLDDVITKR |
| Coding | >Ophio5|4010 ATGGGCCGGTCTTCCAAGAGGGGCGTTCGCTTCCCTCACGGAGCCGCCGCCAACGGCCAGACGTCAGGCTCCGAC GGCCGCCGCTCCAGCTTCAGCGGCTCCGATGATGGATCCGGCTCGCCGTCTAGAACTCGCTCAAAGCCCCACGCC CAGCTGGCTCCCGTGCAAGAGAAACAGGCCACGCCCGAAGACGAATATCAGAAGAAGAAGCAGAATTTCATCACT CGTACTTTTTGGACCTTTAGCATGCTTGCCATGTTCTTCGCCGCCCTCTTCATGGGCCATATTTATATCATCGTT ATCGTCACCGCCGTCCAGATCGTCTCCTTCAAGGAAGTCATCGCCATCTCCAACGTGCCCAGTCGCGCCCGCTCA ATCCGGTCCACCAAGAGCATCAATTGGTACTGGCTCGCCACCACCATGTACTTTTTCTACGGCGAGAGCGTCATC TACTACTTTAAGCACGTTGTTCTCGTTGACAGGGTGCTGCTGCCCCTGGGCATCCATCACCGCTTCATCAGCTTC ATCCTCTACGTCTTCGGCTTCGTCTGCTTCGTCGGCACCCTCAAGGCTGGCAATTACAAGTTTCAGTTTACCAAC TTTGCCTGGACGCACATGGCCCTATACCTCATTGTCGTGCAGGCCCACTTTGTCGTCAACAACGTGTTCGAGGGC ATGATCTGGTTCTTTTTGCCCGCCGCCCTCGTCATCACAAACGACATATTTGCCTACATCTGCGGCATTGCCTTT GGCCGCACCCAGCTCATCAAGCTGTCCCCCAAGAAGACGGTCGAGGGCTTCGTCGGCGCCTGGGTTATGACGGTC GTCTTCGCCATACTGCTTGTCAGCGTCATGATTCGCTCCAAGTACTTTATATGCCCCGTTCATGACCTCGGTGCC AACATCTTCACCGGCCTCGAGTGCGATCCCAATCCCGTCTTCCTCCCTCACACCTATCACCTACCGCACCTGTTT TTCCTGCCGTCCAACAACACCTTTTCCCTCACATTTGCCCCTATGCAGCTTCACGCCTTTGTGCTGGCGACGTTT GCCTCGCTCATCGCGCCCTTTGGCGGCTTCTTCGCCTCGGGTCTCAAGCGGACCTTCAAGATCAAGGACTTTGGC GACTCCATCCCCGGCCACGGCGGCATGACGGACCGCATGGACTGCCAATTCATCATGGGCTTCTTCGCCTACATG TACTACCACACCTTTGTCGAGGTGCACAAGGTCACGATGGGATCCGTGCTGGAAAAGGCCATCACCAGTCTCAGC CCGGAGGAGCAGGTCGAGCTGGTCAAGAGCATGGCTCGATATCTGGGTAACCAGGGCGTCGTGTCGGAAAAGGTG CTCAACTGCTTGGACGACGTGATAACGAAGCGA |
| Transcript | >Ophio5|4010 ATGGGCCGGTCTTCCAAGAGGGGCGTTCGCTTCCCTCACGGAGCCGCCGCCAACGGCCAGACGTCAGGCTCCGAC GGCCGCCGCTCCAGCTTCAGCGGCTCCGATGATGGATCCGGCTCGCCGTCTAGAACTCGCTCAAAGCCCCACGCC CAGCTGGCTCCCGTGCAAGAGAAACAGGCCACGCCCGAAGACGAATATCAGAAGAAGAAGCAGAATTTCATCACT CGTACTTTTTGGACCTTTAGCATGCTTGCCATGTTCTTCGCCGCCCTCTTCATGGGCCATATTTATATCATCGTT ATCGTCACCGCCGTCCAGATCGTCTCCTTCAAGGAAGTCATCGCCATCTCCAACGTGCCCAGTCGCGCCCGCTCA ATCCGGTCCACCAAGAGCATCAATTGGTACTGGCTCGCCACCACCATGTACTTTTTCTACGGCGAGAGCGTCATC TACTACTTTAAGCACGTTGTTCTCGTTGACAGGGTGCTGCTGCCCCTGGGCATCCATCACCGCTTCATCAGCTTC ATCCTCTACGTCTTCGGCTTCGTCTGCTTCGTCGGCACCCTCAAGGCTGGCAATTACAAGTTTCAGTTTACCAAC TTTGCCTGGACGCACATGGCCCTATACCTCATTGTCGTGCAGGCCCACTTTGTCGTCAACAACGTGTTCGAGGGC ATGATCTGGTTCTTTTTGCCCGCCGCCCTCGTCATCACAAACGACATATTTGCCTACATCTGCGGCATTGCCTTT GGCCGCACCCAGCTCATCAAGCTGTCCCCCAAGAAGACGGTCGAGGGCTTCGTCGGCGCCTGGGTTATGACGGTC GTCTTCGCCATACTGCTTGTCAGCGTCATGATTCGCTCCAAGTACTTTATATGCCCCGTTCATGACCTCGGTGCC AACATCTTCACCGGCCTCGAGTGCGATCCCAATCCCGTCTTCCTCCCTCACACCTATCACCTACCGCACCTGTTT TTCCTGCCGTCCAACAACACCTTTTCCCTCACATTTGCCCCTATGCAGCTTCACGCCTTTGTGCTGGCGACGTTT GCCTCGCTCATCGCGCCCTTTGGCGGCTTCTTCGCCTCGGGTCTCAAGCGGACCTTCAAGATCAAGGACTTTGGC GACTCCATCCCCGGCCACGGCGGCATGACGGACCGCATGGACTGCCAATTCATCATGGGCTTCTTCGCCTACATG TACTACCACACCTTTGTCGAGGTGCACAAGGTCACGATGGGATCCGTGCTGGAAAAGGCCATCACCAGTCTCAGC CCGGAGGAGCAGGTCGAGCTGGTCAAGAGCATGGCTCGATATCTGGGTAACCAGGGCGTCGTGTCGGAAAAGGTG CTCAACTGCTTGGACGACGTGATAACGAAGCGATGA |
| Gene | >Ophio5|4010 ATGGGCCGGTCTTCCAAGAGGGGCGTTCGCTTCCCTCACGGAGCCGCCGCCAACGGCCAGACGTCAGGCTCCGAC GGCCGCCGCTCCAGCTTCAGCGGCTCCGATGATGGATCCGGCTCGCCGTCTAGAACTCGCTCAAAGCCCCACGCC CAGCTGGCTCCCGTGCAAGAGGTAGCAGCAGCTGCTCGTCCTCTCTCTGTGCCTCGTCCGCGCTGACTCTGGCGC GCAGAAACAGGCCACGCCCGAAGACGAATATCAGAAGAAGAAGCAGAATTTCATCACTCGTACTTTTTGGACCTT TAGCATGCTTGCCATGTTCTTCGCCGCCCTCTTCATGGGCCATATTTATATCATCGTTATCGTCACCGCCGTCCA GATCGTCTCCTTCAAGGAAGTCATCGCCATCTCCAACGTGCCCAGTCGCGCCCGCTCAATCCGGTCCACCAAGAG CATCAATTGGTACTGGCTCGCCACCACCATGTACTTTTTCTACGGCGAGAGCGTCATCTACTACTTTAAGCACGT TGTTCTCGTTGACAGGGTGCTGCTGCCCCTGGGCATCCATCACCGCTTCATCAGCTTCATCCTCTACGTCTTCGG TTCATCTCTCTGGTCCGTGACCTCGCGTCCATGACTGACACTTGCCCAGGCTTCGTCTGCTTCGTCGGCACCCTC AAGGCTGGCAATTACAAGTTTCAGTTTACCAACTTTGCCTGGACGCACATGGCCCTATACCTCATTGTCGTGCAG GCCCACTTTGTCGTCAACAACGTGTTCGAGGGCATGATCTGGTTCTTTTTGCCCGCCGCCCTCGTCATCACAAAC GACATATTTGCCTACATCTGCGGCATTGCCTTTGGCCGCACCCAGCTCATCAAGCTGTCCCCCAAGAAGACGGTC GAGGGCTTCGTCGGCGCCTGGGTTATGACGGTCGTCTTCGCCATACTGCTTGTCAGCGTCATGATTCGCTCCAAG TACTTTATATGCCCCGTTCATGTGAGTATCGGTTTCTTTTTGGGGCTCTGTCTTGGGCTTCACTGACACTCTCGG CCCGCCCTCAGGACCTCGGTGCCAACATCTTCACCGGCCTCGAGTGCGATCCCAATCCCGTCTTCCTCCCTCACA CCTATCACCTACCGCACCTGTTTTTCCTGCCGTCCAACAACACCTTTTCCCTCACATTTGCCCCTATGCAGCTTC ACGCCTTTGTGCTGGCGACGTTTGCCTCGCTCATCGCGCCCTTTGGCGGCTTCTTCGCCTCGGGTCTCAAGCGGA CCTTCAAGATCAAGGACTTTGGCGACTCCATCCCCGGCCACGGCGGCATGACGGACCGCATGGACTGCCAATTCA TCATGGGCTTCTTCGCCTACATGTACTACCACACCTTTGTCGAGGTGCACAAGGTCACGATGGGATCCGTGCTGG AAAAGGCCATCACCAGTCTCAGCCCGGAGGAGCAGGTCGAGCTGGTCAAGAGCATGGCTCGATATCTGGGTAACC AGGGCGTCGTGTCGGAAAAGGTGAGCATCCGGATGAAGCCCACTGCCCTACTTTTGGATTTTTTTTTTCTTTGTA TCTTGTTCTATCTCTCTTGGGCCTTGTTCTGTTTGCCTTGTGTAGTCTTTGTTTTTTCGTTGGAGGACGCGGCTG ACAATCCAAAGGTGCTCAACTGCTTGGACGACGTGATAACGAAGCGATGA |