Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3992
Gene name
Locationscaffold_310:2845..5444
Strand+
Gene length (bp)2599
Transcript length (bp)2328
Coding sequence length (bp)2325
Protein length (aa) 775

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01846 FF FF domain 6.9E-09 152 201
PF01846 FF FF domain 8.5E-11 219 269
PF01846 FF FF domain 6.3E-10 364 418
PF00397 WW WW domain 6.8E-10 15 42
PF00397 WW WW domain 3.2E-07 57 83

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1 3 568 1.0E-103
sp|P33203|PRP40_YEAST Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1 15 544 7.0E-50
sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1 14 568 1.0E-47
sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1 147 554 9.0E-43
sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2 147 554 2.0E-42
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Swissprot ID Swissprot Description Start End E-value
sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1 3 568 1.0E-103
sp|P33203|PRP40_YEAST Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1 15 544 7.0E-50
sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1 14 568 1.0E-47
sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1 147 554 9.0E-43
sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2 147 554 2.0E-42
sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=1 SV=2 15 550 4.0E-41
sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b PE=1 SV=2 15 612 6.0E-41
sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B PE=1 SV=1 147 540 5.0E-37
sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1 147 584 3.0E-28
sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1 17 416 9.0E-22
sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2 15 91 8.0E-17
sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1 17 91 1.0E-16
sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1 15 89 3.0E-15
sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B PE=1 SV=1 11 83 3.0E-15
sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b PE=1 SV=2 11 83 8.0E-15
sp|Q61048|WBP4_MOUSE WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=4 17 86 6.0E-11
sp|Q5HZF2|WBP4_RAT WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1 17 86 2.0E-10
sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2 13 332 3.0E-09
sp|Q5F457|WBP4_CHICK WW domain-binding protein 4 OS=Gallus gallus GN=WBP4 PE=2 SV=1 12 86 1.0E-08
sp|O75554|WBP4_HUMAN WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1 12 92 2.0E-07
sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2 157 291 4.0E-06
sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1 SV=2 157 291 5.0E-06
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 24 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3992
MNGFPGPPQGGPPTSPWREHQTPDGRVYFYNSVTKVTQWTKPEDLMTGAERALANQPWKEYTAEGGRKYWYNTET
KQSSWEMPEIFKNALGTAENRSSFAPSAPHGPAHGVGRQGYREPGRGPRDSLPDQRQLARAFVPATDNVPDYATQ
EEAVAAFTKALRRHGVQPDWTWEQTIIELAKDPQFRAIKKPKARREAFDKYCHDVVVHEKERAQERFAKLRADFQ
TMFKRHPEIKHYTRWKTARPMLEGETHFRSTDDENERRQLFDEYIAELKKKHKEEQTAQRKAALDAIRDLLPKLD
INAYTRWSEGKNIISTATQDDSKYQALTKSDVLLKFQDHVRSLERILNEKIQHDKKMRSRRERRNRDAFKGLLAE
LRRDGHIKANSKWSSVFHLFAEDERYDNLLGQEGSTPMELFWDMVAEEERALRGPRNVVVDVLEDKQFDLAPQTP
FEEFFSVMRDDRRTASIDEATLRHIFERLRERRAAKREDDRQLDRHQRHALEDLRSHMKHIDPPIKLGDTWEVVR
PRLSQLPEFQAVGSEEAVRYAFDKHMRRMRERADEEHERDQRRNNRVSSERDMPRRTRDRSRGERSHRGGRSSRR
SRSPEPDPYEDDRRRAVAERERNHRKSAMAENVLSAGDRARLSPPPRRERDRDYRERDRGYDRYARPRRSDDGVF
ARERRERDDDRERTFRRPVDSRSVDELNYGDEGPSAAPASRRRRPDEDEGFSRREQRDSKRLKKEGSRERTPQQK
RNRSPLPARQVVDVRSGSEEGEIEE
Coding >Ophio5|3992
ATGAACGGCTTCCCAGGCCCCCCCCAAGGCGGGCCGCCCACCTCGCCATGGAGAGAACATCAAACGCCTGACGGC
CGAGTCTATTTTTACAACTCCGTCACCAAAGTCACTCAGTGGACTAAGCCTGAAGACTTGATGACCGGCGCCGAG
CGCGCTCTCGCCAACCAGCCATGGAAGGAGTATACCGCTGAGGGCGGAAGAAAGTACTGGTACAATACCGAGACG
AAGCAGAGCTCGTGGGAGATGCCTGAAATCTTCAAAAACGCTCTCGGCACTGCCGAAAACCGAAGCTCTTTTGCC
CCGTCTGCACCGCATGGCCCTGCCCATGGTGTCGGCCGTCAGGGCTACCGCGAGCCAGGACGCGGCCCGCGTGAC
TCGTTGCCCGACCAACGCCAGTTGGCGCGGGCTTTCGTGCCCGCCACTGACAACGTCCCCGACTACGCAACTCAG
GAGGAGGCCGTGGCTGCCTTCACCAAAGCACTCCGTCGTCATGGCGTCCAGCCCGACTGGACCTGGGAGCAGACT
ATCATAGAGCTGGCCAAGGACCCCCAGTTCCGCGCCATTAAGAAGCCCAAGGCCCGAAGGGAGGCCTTTGACAAG
TACTGCCATGACGTGGTTGTCCATGAGAAGGAGCGGGCTCAAGAGAGATTTGCAAAGCTTCGAGCCGACTTTCAA
ACCATGTTTAAGCGTCACCCAGAGATCAAGCACTATACCCGTTGGAAGACGGCTCGGCCCATGCTCGAAGGCGAG
ACTCATTTTCGCTCTACTGACGACGAAAACGAGCGCCGCCAGCTATTTGACGAGTATATCGCCGAACTCAAGAAA
AAACACAAGGAAGAGCAGACCGCCCAGCGAAAGGCGGCGCTCGATGCCATCAGGGACCTGCTTCCCAAACTCGAC
ATCAATGCCTACACGCGCTGGTCCGAAGGAAAAAATATCATCTCTACCGCCACGCAGGATGATTCCAAGTATCAG
GCCTTGACCAAAAGTGACGTCTTGCTTAAGTTTCAAGACCACGTTAGGTCGCTCGAGCGTATCCTCAACGAAAAG
ATACAGCATGATAAGAAGATGAGGTCTCGTCGTGAGCGCCGCAACAGAGATGCATTCAAAGGTCTTTTGGCCGAA
CTTCGTCGAGACGGTCACATCAAGGCCAACTCCAAGTGGAGTTCGGTCTTTCACCTCTTTGCCGAAGACGAGCGT
TACGACAATTTGTTGGGACAAGAAGGTTCCACTCCAATGGAGCTCTTCTGGGATATGGTCGCGGAGGAGGAACGC
GCACTGCGTGGTCCCCGAAACGTCGTCGTCGATGTCCTTGAAGACAAACAATTTGACCTTGCACCGCAAACCCCC
TTCGAGGAGTTTTTTTCTGTCATGAGAGATGATCGCCGCACGGCCAGTATCGACGAGGCCACTTTGCGGCACATT
TTTGAACGGCTTCGCGAGAGGCGGGCTGCCAAACGAGAGGATGATCGCCAGCTCGATCGCCACCAGCGCCACGCG
CTCGAAGACCTACGCTCACACATGAAGCACATTGATCCGCCCATCAAGCTGGGAGACACCTGGGAAGTCGTACGT
CCTCGTCTATCCCAGCTGCCCGAGTTCCAGGCCGTCGGCTCCGAGGAAGCTGTTCGATATGCTTTCGACAAGCAC
ATGCGCCGCATGAGGGAGAGGGCGGATGAGGAACACGAGCGAGACCAGCGAAGGAACAACCGCGTTTCCAGCGAA
CGAGACATGCCTCGCCGTACTAGGGATCGGTCCAGAGGCGAAAGATCTCATCGCGGCGGACGTTCTTCGCGACGC
AGCCGCAGCCCGGAGCCGGATCCCTACGAGGATGACAGACGTCGGGCCGTTGCCGAGAGAGAGCGAAACCATCGC
AAGTCAGCCATGGCCGAGAACGTGTTGTCGGCTGGTGATCGCGCGCGGCTTAGCCCGCCGCCGCGACGCGAGCGC
GACCGTGACTACCGGGAGCGAGACCGCGGATACGATCGTTACGCTCGTCCCCGTCGCAGCGACGACGGAGTTTTT
GCCCGCGAGCGCCGAGAGCGCGACGACGACCGTGAGCGGACTTTCCGTCGCCCCGTGGACTCCCGCTCTGTCGAC
GAGCTCAACTACGGAGACGAAGGACCCTCGGCGGCTCCAGCCTCCCGACGCCGTCGCCCTGACGAGGATGAAGGA
TTTTCTCGCCGCGAACAGAGAGACTCCAAGAGACTCAAGAAAGAGGGGTCTCGTGAGCGGACGCCGCAGCAAAAG
CGAAACCGCTCTCCGTTGCCGGCCAGACAGGTGGTGGACGTCAGGAGCGGAAGCGAAGAAGGCGAGATCGAGGAG
Transcript >Ophio5|3992
ATGAACGGCTTCCCAGGCCCCCCCCAAGGCGGGCCGCCCACCTCGCCATGGAGAGAACATCAAACGCCTGACGGC
CGAGTCTATTTTTACAACTCCGTCACCAAAGTCACTCAGTGGACTAAGCCTGAAGACTTGATGACCGGCGCCGAG
CGCGCTCTCGCCAACCAGCCATGGAAGGAGTATACCGCTGAGGGCGGAAGAAAGTACTGGTACAATACCGAGACG
AAGCAGAGCTCGTGGGAGATGCCTGAAATCTTCAAAAACGCTCTCGGCACTGCCGAAAACCGAAGCTCTTTTGCC
CCGTCTGCACCGCATGGCCCTGCCCATGGTGTCGGCCGTCAGGGCTACCGCGAGCCAGGACGCGGCCCGCGTGAC
TCGTTGCCCGACCAACGCCAGTTGGCGCGGGCTTTCGTGCCCGCCACTGACAACGTCCCCGACTACGCAACTCAG
GAGGAGGCCGTGGCTGCCTTCACCAAAGCACTCCGTCGTCATGGCGTCCAGCCCGACTGGACCTGGGAGCAGACT
ATCATAGAGCTGGCCAAGGACCCCCAGTTCCGCGCCATTAAGAAGCCCAAGGCCCGAAGGGAGGCCTTTGACAAG
TACTGCCATGACGTGGTTGTCCATGAGAAGGAGCGGGCTCAAGAGAGATTTGCAAAGCTTCGAGCCGACTTTCAA
ACCATGTTTAAGCGTCACCCAGAGATCAAGCACTATACCCGTTGGAAGACGGCTCGGCCCATGCTCGAAGGCGAG
ACTCATTTTCGCTCTACTGACGACGAAAACGAGCGCCGCCAGCTATTTGACGAGTATATCGCCGAACTCAAGAAA
AAACACAAGGAAGAGCAGACCGCCCAGCGAAAGGCGGCGCTCGATGCCATCAGGGACCTGCTTCCCAAACTCGAC
ATCAATGCCTACACGCGCTGGTCCGAAGGAAAAAATATCATCTCTACCGCCACGCAGGATGATTCCAAGTATCAG
GCCTTGACCAAAAGTGACGTCTTGCTTAAGTTTCAAGACCACGTTAGGTCGCTCGAGCGTATCCTCAACGAAAAG
ATACAGCATGATAAGAAGATGAGGTCTCGTCGTGAGCGCCGCAACAGAGATGCATTCAAAGGTCTTTTGGCCGAA
CTTCGTCGAGACGGTCACATCAAGGCCAACTCCAAGTGGAGTTCGGTCTTTCACCTCTTTGCCGAAGACGAGCGT
TACGACAATTTGTTGGGACAAGAAGGTTCCACTCCAATGGAGCTCTTCTGGGATATGGTCGCGGAGGAGGAACGC
GCACTGCGTGGTCCCCGAAACGTCGTCGTCGATGTCCTTGAAGACAAACAATTTGACCTTGCACCGCAAACCCCC
TTCGAGGAGTTTTTTTCTGTCATGAGAGATGATCGCCGCACGGCCAGTATCGACGAGGCCACTTTGCGGCACATT
TTTGAACGGCTTCGCGAGAGGCGGGCTGCCAAACGAGAGGATGATCGCCAGCTCGATCGCCACCAGCGCCACGCG
CTCGAAGACCTACGCTCACACATGAAGCACATTGATCCGCCCATCAAGCTGGGAGACACCTGGGAAGTCGTACGT
CCTCGTCTATCCCAGCTGCCCGAGTTCCAGGCCGTCGGCTCCGAGGAAGCTGTTCGATATGCTTTCGACAAGCAC
ATGCGCCGCATGAGGGAGAGGGCGGATGAGGAACACGAGCGAGACCAGCGAAGGAACAACCGCGTTTCCAGCGAA
CGAGACATGCCTCGCCGTACTAGGGATCGGTCCAGAGGCGAAAGATCTCATCGCGGCGGACGTTCTTCGCGACGC
AGCCGCAGCCCGGAGCCGGATCCCTACGAGGATGACAGACGTCGGGCCGTTGCCGAGAGAGAGCGAAACCATCGC
AAGTCAGCCATGGCCGAGAACGTGTTGTCGGCTGGTGATCGCGCGCGGCTTAGCCCGCCGCCGCGACGCGAGCGC
GACCGTGACTACCGGGAGCGAGACCGCGGATACGATCGTTACGCTCGTCCCCGTCGCAGCGACGACGGAGTTTTT
GCCCGCGAGCGCCGAGAGCGCGACGACGACCGTGAGCGGACTTTCCGTCGCCCCGTGGACTCCCGCTCTGTCGAC
GAGCTCAACTACGGAGACGAAGGACCCTCGGCGGCTCCAGCCTCCCGACGCCGTCGCCCTGACGAGGATGAAGGA
TTTTCTCGCCGCGAACAGAGAGACTCCAAGAGACTCAAGAAAGAGGGGTCTCGTGAGCGGACGCCGCAGCAAAAG
CGAAACCGCTCTCCGTTGCCGGCCAGACAGGTGGTGGACGTCAGGAGCGGAAGCGAAGAAGGCGAGATCGAGGAG
TGA
Gene >Ophio5|3992
ATGAACGGCTTCCCAGGCCCCCCCCAAGGCGGGCCGCCCACCTCGCCATGGAGAGAACATCAAACGCCTGACGGC
CGAGTCTATTTTTACAACTCCGTCACCAAAGTCACTCAGTGGACTAAGCCTGAAGACTTGATGACCGGCGCCGAG
GTTGGTTCCCATCGCTGCCTCACTGCCGAGCTGTTTGCTGACTTTGTTTTTTTTCTTTCCTCCAGCGCGCTCTCG
CCAACCAGCCATGGAAGGAGTATACCGCTGAGGGCGGAAGAAAGTACTGGTACAATACCGAGACGAAGCAGAGCT
CGTGGGAGATGCCTGAAATCTTCAAAAACGCTCTCGGCACTGCCGAAAACCGAAGCTCTTTTGCCCCGTCTGCAC
CGCATGGCCCTGCCCATGGTGTCGGCCGTCAGGGCTACCGCGAGCCAGGACGCGGCCCGCGTGACTCGTTGCCCG
ACCAACGCCAGTTGGCGCGGGCTTTCGTGCCCGCCACTGACAACGTCCCCGACTACGCAACTCAGGAGGAGGCCG
TGGCTGCCTTCACCAAAGCACTCCGTCGTCATGGCGTCCAGCCCGACTGGACCTGGGAGCAGACTATCATAGAGC
TGGCCAAGGACCCCCAGTTCCGCGCCATTAAGAAGCCCAAGGCCCGAAGGGAGGCCTTTGACAAGTACTGCCATG
ACGTGGTTGTCCATGAGAAGGAGCGGGCTCAAGAGAGATTTGCAAAGCTTCGAGCCGACTTTCAAACCATGTTTA
AGCGTCACCCAGAGATCAAGCACTATACCCGTTGGAAGACGGCTCGGCCCATGCTCGAAGGCGAGACTCATTTTC
GCTCTACTGACGACGAAAACGAGCGCCGCCAGCTATTTGACGAGTATATCGCCGAACTCAAGAAAAAACACAAGG
AAGAGCAGACCGCCCAGCGAAAGGCGGCGCTCGATGCCATCAGGGACCTGCTTCCCAAACTCGACATCAATGCCT
ACACGCGCTGGTCCGAAGGAAAAAATATCATCTCTACCGCCACGCAGGATGATTCCAAGTATCAGGCCTTGACCA
AAAGTGACGTCTTGCTTAAGTTTCAAGACCACGTTAGGTCGCTCGAGCGTATCCTCAACGAAAAGATACAGCATG
ATAAGAAGATGAGGTCTCGTCGTGAGCGCCGCAACAGAGATGCATTCAAAGGTCTTTTGGCCGAACTTCGTCGAG
ACGGTCACATCAAGGCCAACTCCAAGTGGAGTTCGGTCTTTCACCTCTTTGCCGAAGACGAGCGTTACGACAATT
TGTTGGGACAAGAAGGTTCCACTCCAATGGAGCTCTTCTGGGATATGGTCGCGGAGGAGGAACGCGCACTGCGTG
GTCCCCGAAACGTCGTCGTCGATGTCCTTGAAGTAAGCCTCTGACCATGTTTCCTTATGTTTCTTTTGGTTTCCT
TTGTCTTAATCTCTTTCCTTTCCAATCTTGGAGCTGATCGTCCATCGTCAAGGACAAACAATTTGACCTTGCACC
GCAAACCCCCTTCGAGGAGTTTTTTTCTGTCATGAGAGATGATCGCCGCACGGCCAGTATCGACGAGGCCACTTT
GCGGCACATTTTTGAACGGGTAAGCTTCACATCCATTCGCTGTTCAACCATGTAACTCATGGTTTGTCTCAGCTT
CGCGAGAGGCGGGCTGCCAAACGAGAGGATGATCGCCAGCTCGATCGCCACCAGCGCCACGCGCTCGAAGACCTA
CGCTCACACATGAAGCACATTGATCCGCCCATCAAGCTGGGAGACACCTGGGAAGTCGTACGTCCTCGTCTATCC
CAGCTGCCCGAGTTCCAGGCCGTCGGCTCCGAGGAAGCTGTTCGATATGCTTTCGACAAGCACATGCGCCGCATG
AGGGAGAGGGCGGATGAGGAACACGAGCGAGACCAGCGAAGGAACAACCGCGTTTCCAGCGAACGAGACATGCCT
CGCCGTACTAGGGATCGGTCCAGAGGCGAAAGATCTCATCGCGGCGGACGTTCTTCGCGACGCAGCCGCAGCCCG
GAGCCGGATCCCTACGAGGATGACAGACGTCGGGCCGTTGCCGAGAGAGAGCGAAACCATCGCAAGTCAGCCATG
GCCGAGAACGTGTTGTCGGCTGGTGATCGCGCGCGGCTTAGCCCGCCGCCGCGACGCGAGCGCGACCGTGACTAC
CGGGAGCGAGACCGCGGATACGATCGTTACGCTCGTCCCCGTCGCAGCGACGACGGAGTTTTTGCCCGCGAGCGC
CGAGAGCGCGACGACGACCGTGAGCGGACTTTCCGTCGCCCCGTGGACTCCCGCTCTGTCGACGAGCTCAACTAC
GGAGACGAAGGACCCTCGGCGGCTCCAGCCTCCCGACGCCGTCGCCCTGACGAGGATGAAGGATTTTCTCGCCGC
GAACAGAGAGACTCCAAGGCACGATTTCCATTGCACATTACTATTCAAGTCTGGCCTCACTGACACATTTTAACA
GAGACTCAAGAAAGAGGGGTCTCGTGAGCGGACGCCGCAGCAAAAGCGAAACCGCTCTCCGTTGCCGGCCAGACA
GGTGGTGGACGTCAGGAGCGGAAGCGAAGAAGGCGAGATCGAGGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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