© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3984 |
| Gene name | |
| Location | scaffold_31:57812..59350 |
| Strand | + |
| Gene length (bp) | 1538 |
| Transcript length (bp) | 1473 |
| Coding sequence length (bp) | 1470 |
| Protein length (aa) | 490 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00288 | GHMP_kinases_N | GHMP kinases N terminal domain | 7.9E-16 | 210 | 277 |
| PF08544 | GHMP_kinases_C | GHMP kinases C terminal | 2.0E-07 | 387 | 446 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P24521|ERG8_YEAST | Phosphomevalonate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG8 PE=1 SV=2 | 60 | 481 | 7.0E-72 |
| sp|Q9UT88|ERG8_SCHPO | Probable phosphomevalonate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg8 PE=3 SV=1 | 59 | 481 | 6.0E-64 |
| sp|Q97UL6|PMK_SULSO | Phosphomevalonate kinase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2988 PE=1 SV=1 | 211 | 481 | 5.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0017076 | purine nucleotide binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | 0.4469 | 0.4376 | 0.4267 | 0.0543 | 0.4552 | 0.2469 | 0.2595 | 0.2863 | 0.2013 | 0.3213 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.995362 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 38.16 | 20.07 | 56.25 |
| CcL | In ants, during behavior modification | 53.67 | 28.01 | 79.33 |
| CcD | In ants, recently dead | 49.35 | 26.85 | 71.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.154608 | no |
| SC16a | CcD | 0.287388 | no |
| CcL | CcD | 0.760111 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 2087 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3984 MRLCAKLLLLFPLLSSPLLHDPSRQSLKGICSVTFEPSSTVFSPQNKAGPMPTPQRPTVAVSAPGKVLLTGGYLV LDREHTGLVSGLSARINVVAGEITTGQGVQLSEMVVDSPQFLDAQWRYGYHLAAEGGGIKVTQLQVISRNKFVET TLSFVLTYINHVALSSSGRGIGSARLIILADNDYYSQTPSAAFDARGRFAKFTVPLTRAHKTGLGSSAALVTAIA ASLLCHYLPEDRFDVSTTKGRATLHNLAQAAHCAAQGKVGSGFDVAAAVYGSCVYRRFSPHVLSRLPAPGEAGFS DSLAAVVDGGWDVEIDSGGMRIPDGLTLHMCDVDGGTQSVGMAKKVLSWRSRHPETCSELWQRLQTANDALADHL RSGTVDQLPDAIRAIRVLLRDMGKLSDVPIEPESQTELLDAVSAVDGVYGGVVPGAGGFDALALLARDDDATRER LDARLSLWSEQKNTSVRLLGVRSETDGVRSEDLDVYAGWL |
| Coding | >Ophio5|3984 ATGCGACTCTGCGCAAAGCTTCTCCTTCTCTTTCCTCTCCTCTCCTCTCCTCTCCTACATGACCCATCTCGTCAG TCCCTCAAAGGCATTTGTTCGGTGACTTTTGAACCGTCATCTACCGTCTTCTCACCCCAAAACAAGGCCGGCCCA ATGCCGACTCCACAACGTCCGACAGTTGCCGTCTCGGCGCCGGGCAAGGTGCTGCTCACGGGCGGCTACCTGGTG CTCGACCGGGAGCACACCGGGCTGGTGTCGGGGCTCAGCGCACGAATCAACGTGGTGGCGGGCGAGATCACGACA GGCCAGGGCGTACAGCTGAGCGAGATGGTCGTCGACAGCCCGCAGTTCCTCGACGCGCAGTGGCGCTATGGGTAC CATCTCGCGGCCGAGGGAGGCGGCATCAAGGTGACGCAGCTACAGGTAATCTCGCGTAACAAGTTTGTCGAGACG ACGTTGAGTTTTGTTCTGACCTATATCAATCACGTCGCCCTGTCGTCTTCGGGGAGAGGCATCGGCTCGGCTCGG CTCATCATACTGGCCGACAATGACTATTATTCGCAGACGCCTTCTGCCGCATTCGATGCTCGTGGTCGCTTCGCC AAGTTCACCGTTCCGCTGACGAGGGCACATAAGACGGGGCTCGGCTCTTCGGCTGCTCTCGTCACCGCCATCGCC GCCTCTCTGCTGTGTCATTACCTGCCGGAGGACAGATTCGACGTGTCGACGACGAAGGGTCGGGCCACGTTGCAT AATCTGGCTCAGGCCGCTCACTGCGCTGCCCAGGGGAAAGTGGGCTCTGGCTTCGACGTCGCCGCCGCCGTCTAC GGCTCCTGTGTCTACCGCCGCTTCTCCCCGCATGTGCTGAGCCGGCTGCCGGCGCCCGGTGAGGCCGGCTTTAGC GATAGCTTGGCGGCTGTCGTCGACGGCGGCTGGGATGTGGAGATTGACTCTGGCGGGATGCGTATACCCGACGGC CTGACGCTGCACATGTGCGACGTCGACGGCGGCACCCAGTCGGTCGGTATGGCGAAGAAGGTCTTGTCCTGGAGA AGCCGCCATCCCGAGACCTGCAGCGAGCTCTGGCAGCGGCTCCAGACGGCCAACGACGCGCTTGCGGATCATCTC CGCAGCGGGACTGTCGATCAGCTTCCCGATGCCATCCGCGCCATTCGCGTTCTGCTTCGTGATATGGGCAAGCTC AGCGACGTGCCCATCGAGCCCGAGTCTCAGACGGAGCTGCTCGACGCCGTCAGCGCCGTCGACGGCGTCTACGGA GGCGTCGTCCCCGGTGCTGGCGGTTTCGACGCCCTAGCCTTACTGGCTCGCGACGACGACGCGACGAGGGAACGC CTCGACGCCCGTCTCTCCCTGTGGAGTGAGCAAAAGAATACCTCGGTCCGGCTCCTGGGCGTCAGGAGCGAGACG GACGGGGTGCGGTCGGAAGACCTGGACGTCTACGCCGGCTGGCTA |
| Transcript | >Ophio5|3984 ATGCGACTCTGCGCAAAGCTTCTCCTTCTCTTTCCTCTCCTCTCCTCTCCTCTCCTACATGACCCATCTCGTCAG TCCCTCAAAGGCATTTGTTCGGTGACTTTTGAACCGTCATCTACCGTCTTCTCACCCCAAAACAAGGCCGGCCCA ATGCCGACTCCACAACGTCCGACAGTTGCCGTCTCGGCGCCGGGCAAGGTGCTGCTCACGGGCGGCTACCTGGTG CTCGACCGGGAGCACACCGGGCTGGTGTCGGGGCTCAGCGCACGAATCAACGTGGTGGCGGGCGAGATCACGACA GGCCAGGGCGTACAGCTGAGCGAGATGGTCGTCGACAGCCCGCAGTTCCTCGACGCGCAGTGGCGCTATGGGTAC CATCTCGCGGCCGAGGGAGGCGGCATCAAGGTGACGCAGCTACAGGTAATCTCGCGTAACAAGTTTGTCGAGACG ACGTTGAGTTTTGTTCTGACCTATATCAATCACGTCGCCCTGTCGTCTTCGGGGAGAGGCATCGGCTCGGCTCGG CTCATCATACTGGCCGACAATGACTATTATTCGCAGACGCCTTCTGCCGCATTCGATGCTCGTGGTCGCTTCGCC AAGTTCACCGTTCCGCTGACGAGGGCACATAAGACGGGGCTCGGCTCTTCGGCTGCTCTCGTCACCGCCATCGCC GCCTCTCTGCTGTGTCATTACCTGCCGGAGGACAGATTCGACGTGTCGACGACGAAGGGTCGGGCCACGTTGCAT AATCTGGCTCAGGCCGCTCACTGCGCTGCCCAGGGGAAAGTGGGCTCTGGCTTCGACGTCGCCGCCGCCGTCTAC GGCTCCTGTGTCTACCGCCGCTTCTCCCCGCATGTGCTGAGCCGGCTGCCGGCGCCCGGTGAGGCCGGCTTTAGC GATAGCTTGGCGGCTGTCGTCGACGGCGGCTGGGATGTGGAGATTGACTCTGGCGGGATGCGTATACCCGACGGC CTGACGCTGCACATGTGCGACGTCGACGGCGGCACCCAGTCGGTCGGTATGGCGAAGAAGGTCTTGTCCTGGAGA AGCCGCCATCCCGAGACCTGCAGCGAGCTCTGGCAGCGGCTCCAGACGGCCAACGACGCGCTTGCGGATCATCTC CGCAGCGGGACTGTCGATCAGCTTCCCGATGCCATCCGCGCCATTCGCGTTCTGCTTCGTGATATGGGCAAGCTC AGCGACGTGCCCATCGAGCCCGAGTCTCAGACGGAGCTGCTCGACGCCGTCAGCGCCGTCGACGGCGTCTACGGA GGCGTCGTCCCCGGTGCTGGCGGTTTCGACGCCCTAGCCTTACTGGCTCGCGACGACGACGCGACGAGGGAACGC CTCGACGCCCGTCTCTCCCTGTGGAGTGAGCAAAAGAATACCTCGGTCCGGCTCCTGGGCGTCAGGAGCGAGACG GACGGGGTGCGGTCGGAAGACCTGGACGTCTACGCCGGCTGGCTATAA |
| Gene | >Ophio5|3984 ATGCGACTCTGCGCAAAGCTTCTCCTTCTCTTTCCTCTCCTCTCCTCTCCTCTCCTACATGACCCATCTCGTCAG TCCCTCAAAGGCATTTGTTCGGTGACTTTTGAACCGTCATCTACCGTCTTCTCACCCCAAAACAAGGCCGGCCCA ATGCCGACTCCACAACGTCCGACAGTTGCCGTCTCGGCGCCGGGCAAGGTGCTGCTCACGGGCGGCTACCTGGTG CTCGACCGGGAGCACACCGGGCTGGTGTCGGGGCTCAGCGCACGAATCAACGTGGTGGCGGGCGAGATCACGACA GGCCAGGGCGTACAGCTGAGCGAGATGGTCGTCGACAGCCCGCAGTTCCTCGACGCGCAGTGGCGCTATGGGTAC CATCTCGCGGCCGAGGGAGGCGGCATCAAGGTGACGCAGCTACAGGTGTGAGTCCCGGGCATGGCAAGGGGAAGC GGTCGAATGCCGTGTCTAACTCGGACAGCGGATCTAGAATCTCGCGTAACAAGTTTGTCGAGACGACGTTGAGTT TTGTTCTGACCTATATCAATCACGTCGCCCTGTCGTCTTCGGGGAGAGGCATCGGCTCGGCTCGGCTCATCATAC TGGCCGACAATGACTATTATTCGCAGACGCCTTCTGCCGCATTCGATGCTCGTGGTCGCTTCGCCAAGTTCACCG TTCCGCTGACGAGGGCACATAAGACGGGGCTCGGCTCTTCGGCTGCTCTCGTCACCGCCATCGCCGCCTCTCTGC TGTGTCATTACCTGCCGGAGGACAGATTCGACGTGTCGACGACGAAGGGTCGGGCCACGTTGCATAATCTGGCTC AGGCCGCTCACTGCGCTGCCCAGGGGAAAGTGGGCTCTGGCTTCGACGTCGCCGCCGCCGTCTACGGCTCCTGTG TCTACCGCCGCTTCTCCCCGCATGTGCTGAGCCGGCTGCCGGCGCCCGGTGAGGCCGGCTTTAGCGATAGCTTGG CGGCTGTCGTCGACGGCGGCTGGGATGTGGAGATTGACTCTGGCGGGATGCGTATACCCGACGGCCTGACGCTGC ACATGTGCGACGTCGACGGCGGCACCCAGTCGGTCGGTATGGCGAAGAAGGTCTTGTCCTGGAGAAGCCGCCATC CCGAGACCTGCAGCGAGCTCTGGCAGCGGCTCCAGACGGCCAACGACGCGCTTGCGGATCATCTCCGCAGCGGGA CTGTCGATCAGCTTCCCGATGCCATCCGCGCCATTCGCGTTCTGCTTCGTGATATGGGCAAGCTCAGCGACGTGC CCATCGAGCCCGAGTCTCAGACGGAGCTGCTCGACGCCGTCAGCGCCGTCGACGGCGTCTACGGAGGCGTCGTCC CCGGTGCTGGCGGTTTCGACGCCCTAGCCTTACTGGCTCGCGACGACGACGCGACGAGGGAACGCCTCGACGCCC GTCTCTCCCTGTGGAGTGAGCAAAAGAATACCTCGGTCCGGCTCCTGGGCGTCAGGAGCGAGACGGACGGGGTGC GGTCGGAAGACCTGGACGTCTACGCCGGCTGGCTATAA |