Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3980
Gene name
Locationscaffold_31:48190..48812
Strand+
Gene length (bp)622
Transcript length (bp)396
Coding sequence length (bp)393
Protein length (aa) 131

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08507 COPI_assoc COPI associated protein 8.8E-33 6 121

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O14223|TVP15_SCHPO Golgi apparatus membrane protein tvp15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tvp15 PE=3 SV=2 1 122 1.0E-19
sp|Q03860|TVP15_YEAST Golgi apparatus membrane protein TVP15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TVP15 PE=1 SV=1 7 119 8.0E-16

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 67 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 33 52 19
3 65 87 22
4 91 109 18

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3980
MELSDTFRLVNLGVGAITVLGGIAQIFGFKLQTIVVGAYMIVFGLAIALLEFQIPPQISRYASFLFSFIGRGAFY
IFIGCLLLGGMILQNIAGAVVGIVGLAYVVLEFIPSIEPPANMREADGGGWTAEQV
Coding >Ophio5|3980
ATGGAGCTCTCCGATACCTTTCGCCTCGTGAACCTCGGAGTGGGCGCCATCACCGTCCTCGGAGGCATCGCGCAA
ATCTTCGGCTTCAAGCTTCAAACTATCGTCGTCGGTGCTTACATGATTGTCTTCGGCCTCGCCATCGCCCTCTTG
GAATTCCAGATTCCTCCTCAAATCTCACGATATGCCTCTTTCCTCTTCTCCTTCATCGGACGCGGTGCATTCTAC
ATCTTCATCGGATGTCTGCTCCTCGGTGGCATGATCCTCCAGAACATCGCCGGTGCTGTCGTTGGCATCGTTGGT
CTCGCATATGTCGTCCTCGAGTTTATCCCTTCTATCGAACCTCCAGCCAATATGCGCGAAGCCGACGGCGGTGGC
TGGACTGCCGAGCAGGTG
Transcript >Ophio5|3980
ATGGAGCTCTCCGATACCTTTCGCCTCGTGAACCTCGGAGTGGGCGCCATCACCGTCCTCGGAGGCATCGCGCAA
ATCTTCGGCTTCAAGCTTCAAACTATCGTCGTCGGTGCTTACATGATTGTCTTCGGCCTCGCCATCGCCCTCTTG
GAATTCCAGATTCCTCCTCAAATCTCACGATATGCCTCTTTCCTCTTCTCCTTCATCGGACGCGGTGCATTCTAC
ATCTTCATCGGATGTCTGCTCCTCGGTGGCATGATCCTCCAGAACATCGCCGGTGCTGTCGTTGGCATCGTTGGT
CTCGCATATGTCGTCCTCGAGTTTATCCCTTCTATCGAACCTCCAGCCAATATGCGCGAAGCCGACGGCGGTGGC
TGGACTGCCGAGCAGGTGTAA
Gene >Ophio5|3980
ATGGAGCTCTCCGATACCTTGTTCGTGTCGAAGCTGGACTACTGCTGCCTTGGACGCTAACGCGCGTCAGTCGCC
TCGTGAACCTCGGAGTGGGCGCCATCACCGTCCTCGGAGGCATCGCGCAAATCTTCGGCTTCAAGCTGTGCGTCC
CTTATTCTATTCCCTGGCGCATCGTCGTCAGCGCTGACTTGTCCCTGCCATCTAGTCAAACTATCGTCGTCGGTG
CTTACATGATTGTCTTCGGCCTCGCCATCGCCCTCTTGGGTTCGTCGACTTTCCATCGTCGTTCTTGTTCGCGAC
TCGGTTGACACTCGATATAGAATTCCAGATTCCTCCTCAAATCTCACGATATGCCTCTTTCCTCTTCTCCTTCAT
CGGACGCGGTGCATGTGCGTTTCCCCCCTCCTTACCTATACTTCCTTGGCTGATTCCTTGCCGCCACCAAGTCTA
CATCTTCATCGGATGTCTGCTCCTCGGTGGCATGATCCTCCAGAACATCGCCGGTGCTGTCGTTGGCATCGTTGG
TCTCGCATATGTCGTCCTCGAGTTTATCCCTTCTATCGAACCTCCAGCCAATATGCGCGAAGCCGACGGCGGTGG
CTGGACTGCCGAGCAGGTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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