Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|397
Gene name
Locationscaffold_1098:457..947
Strand+
Gene length (bp)490
Transcript length (bp)336
Coding sequence length (bp)333
Protein length (aa) 111

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13233 Complex1_LYR_2 Complex1_LYR-like 1.2E-18 16 94
PF05347 Complex1_LYR Complex 1 protein (LYR family) 5.3E-11 16 70

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4IN52|SDHF3_GIBZE Succinate dehydrogenase assembly factor 3, mitochondrial OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_01356 PE=3 SV=1 3 107 3.0E-53
sp|Q7SF55|SDHF3_NEUCR Succinate dehydrogenase assembly factor 3, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=acu-17 PE=3 SV=1 4 107 1.0E-51
sp|P0C146|SDHF3_MAGO7 Succinate dehydrogenase assembly factor 3, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MGG_17437 PE=3 SV=2 19 109 1.0E-46
sp|Q5BBH7|SDHF3_EMENI Succinate dehydrogenase assembly factor 3, mitochondrial OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN2103 PE=3 SV=1 11 107 1.0E-44
sp|Q4WHK3|SDHF3_ASPFU Succinate dehydrogenase assembly factor 3, mitochondrial OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_2G05090 PE=3 SV=1 19 106 1.0E-40
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Swissprot ID Swissprot Description Start End E-value
sp|Q4IN52|SDHF3_GIBZE Succinate dehydrogenase assembly factor 3, mitochondrial OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_01356 PE=3 SV=1 3 107 3.0E-53
sp|Q7SF55|SDHF3_NEUCR Succinate dehydrogenase assembly factor 3, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=acu-17 PE=3 SV=1 4 107 1.0E-51
sp|P0C146|SDHF3_MAGO7 Succinate dehydrogenase assembly factor 3, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MGG_17437 PE=3 SV=2 19 109 1.0E-46
sp|Q5BBH7|SDHF3_EMENI Succinate dehydrogenase assembly factor 3, mitochondrial OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN2103 PE=3 SV=1 11 107 1.0E-44
sp|Q4WHK3|SDHF3_ASPFU Succinate dehydrogenase assembly factor 3, mitochondrial OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_2G05090 PE=3 SV=1 19 106 1.0E-40
sp|Q59L89|SDHF3_CANAL Succinate dehydrogenase assembly factor 3, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SDH7 PE=3 SV=1 9 107 2.0E-33
sp|Q9P7Y2|SDHF3_SCHPO Succinate dehydrogenase assembly factor 3, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP23A10.03c PE=3 SV=1 12 111 2.0E-33
sp|Q751X1|SDHF3_ASHGO Succinate dehydrogenase assembly factor 3, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=AFR704W PE=3 SV=1 1 107 9.0E-32
sp|Q6BIY6|SDHF3_DEBHA Succinate dehydrogenase assembly factor 3, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2G06622g PE=3 SV=1 9 107 2.0E-31
sp|Q6FMR7|SDHF3_CANGA Succinate dehydrogenase assembly factor 3, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0K05775g PE=3 SV=1 11 107 2.0E-29
sp|Q04401|SDHF3_YEAST Succinate dehydrogenase assembly factor 3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH7 PE=1 SV=1 12 107 1.0E-28
sp|Q4PCI7|SDHF3_USTMA Succinate dehydrogenase assembly factor 3, mitochondrial OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UMAG_10065 PE=3 SV=2 8 107 1.0E-28
sp|Q6CUY0|SDHF3_KLULA Succinate dehydrogenase assembly factor 3, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0C01430g PE=3 SV=1 12 111 3.0E-25
sp|P0CM00|SDHF3_CRYNJ Succinate dehydrogenase assembly factor 3, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNB04080 PE=3 SV=1 4 106 2.0E-20
sp|P0CM01|SDHF3_CRYNB Succinate dehydrogenase assembly factor 3, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CNBB1660 PE=3 SV=1 4 106 2.0E-20
sp|Q6TUF2|SDHF3_RAT Succinate dehydrogenase assembly factor 3, mitochondrial OS=Rattus norvegicus GN=Sdhaf3 PE=2 SV=2 17 110 1.0E-13
sp|Q8BQU3|SDHF3_MOUSE Succinate dehydrogenase assembly factor 3, mitochondrial OS=Mus musculus GN=Sdhaf3 PE=2 SV=1 17 110 1.0E-13
sp|Q8SZ16|SDHF3_DROME Succinate dehydrogenase assembly factor 3, mitochondrial OS=Drosophila melanogaster GN=Sdhaf3 PE=2 SV=1 18 104 5.0E-13
sp|A7S1H9|SDHF3_NEMVE Succinate dehydrogenase assembly factor 3, mitochondrial OS=Nematostella vectensis GN=acn9 PE=3 SV=1 17 104 6.0E-13
sp|Q9NRP4|SDHF3_HUMAN Succinate dehydrogenase assembly factor 3, mitochondrial OS=Homo sapiens GN=SDHAF3 PE=1 SV=1 17 110 1.0E-11
sp|Q0P574|SDHF3_BOVIN Succinate dehydrogenase assembly factor 3, mitochondrial OS=Bos taurus GN=SDHAF3 PE=2 SV=1 17 110 7.0E-09
sp|Q5XIY4|SDHF3_DANRE Succinate dehydrogenase assembly factor 3, mitochondrial OS=Danio rerio GN=sdhaf3 PE=2 SV=1 17 102 8.0E-09
sp|Q86H49|SDHF3_DICDI Succinate dehydrogenase assembly factor 3, mitochondrial OS=Dictyostelium discoideum GN=acn9 PE=3 SV=1 16 69 8.0E-08
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 54.10 18.13 90.08
CcL In ants, during behavior modification 34.99 9.46 60.53
CcD In ants, recently dead 34.40 9.18 59.61

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.222572 no
SC16a CcD 0.200414 no
CcL CcD 0.969663 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|397
MLRSLGPACAALLPPIALYRRLLRAHRKHLPAPMRVLGDEYVKAEFRSHRNVDNPAHLIGFLAEWQLYAQQIEGD
SWAGDKIDPAKLDKLSEEQMRQLFELMQAIQKHKRA
Coding >Ophio5|397
ATGCTGCGAAGCCTCGGACCCGCCTGCGCGGCTCTACTCCCGCCAATAGCCTTGTACCGACGACTACTGCGTGCG
CACCGGAAGCATCTACCCGCCCCTATGCGCGTCCTGGGCGACGAGTACGTCAAGGCAGAGTTCCGCTCTCATCGA
AACGTCGATAACCCGGCTCATCTGATTGGCTTCCTCGCGGAGTGGCAGCTCTATGCCCAGCAGATTGAGGGAGAC
TCTTGGGCCGGTGACAAGATTGACCCCGCAAAGTTGGATAAGCTGAGCGAGGAGCAGATGCGACAGCTCTTCGAG
TTGATGCAGGCAATCCAGAAGCACAAACGGGCG
Transcript >Ophio5|397
ATGCTGCGAAGCCTCGGACCCGCCTGCGCGGCTCTACTCCCGCCAATAGCCTTGTACCGACGACTACTGCGTGCG
CACCGGAAGCATCTACCCGCCCCTATGCGCGTCCTGGGCGACGAGTACGTCAAGGCAGAGTTCCGCTCTCATCGA
AACGTCGATAACCCGGCTCATCTGATTGGCTTCCTCGCGGAGTGGCAGCTCTATGCCCAGCAGATTGAGGGAGAC
TCTTGGGCCGGTGACAAGATTGACCCCGCAAAGTTGGATAAGCTGAGCGAGGAGCAGATGCGACAGCTCTTCGAG
TTGATGCAGGCAATCCAGAAGCACAAACGGGCGTAG
Gene >Ophio5|397
ATGCTGCGAAGCCTCGGACCCGCCTGCGCGGCTCTACTCCCGCCAATAGCCTTGTACCGACGACTACTGCGTGCG
CACCGGAAGCATCTACCCGCCCCTATGCGCGTCCTGGGCGACGAGTACGTCAAGGCAGAGTTCCGCTCTCATCGA
AACGTCGATAACCCGGCTCATCTGGTGAGTCGCTGGCCGTGAAGTCGAGCACGTCCTACTACTCTACAGCCTTTT
GACGTGGCGCGCGCTCGTCTTCAAGATTGGCTTCCTCGCGGAGTGGCAGCTCTATGCCCAGCAGATTGAGGGAGA
CTCTTGGGCCGGTGACAAGATTGACCCCGCAAAGTTGGATAAGCTGAGCGGTAAGCTGCAACGCCTAATCGATTT
TCACATGCGGGTATCTGTGGAGCATGAGGCTCACGGGTGCGCGTCGCCACTAGAGGAGCAGATGCGACAGCTCTT
CGAGTTGATGCAGGCAATCCAGAAGCACAAACGGGCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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