© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3937 |
| Gene name | |
| Location | scaffold_307:21743..22790 |
| Strand | - |
| Gene length (bp) | 1047 |
| Transcript length (bp) | 1047 |
| Coding sequence length (bp) | 1044 |
| Protein length (aa) | 348 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04488 | Gly_transf_sug | Glycosyltransferase sugar-binding region containing DXD motif | 2.0E-07 | 132 | 165 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 24 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 9.40 | 3.12 | 15.67 |
| CcL | In ants, during behavior modification | 1.33 | 0.00 | 3.16 |
| CcD | In ants, recently dead | 1.59 | 0.00 | 3.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.003754 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.808320 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3937 MMHRSSSVTLIIAALFVILLTWPYHRLSWEAIRTRAVSLRPNKGIPNTVHFIFLLKEPDDDFPFAFSHYLSVYSA WYYLQPSTIYLHTDAGHGQIHRARQGLAGKWAQLIMEMPGLIINRVKAPAQTNHGVEIVEMAHKSDFIRVHVLHK LGGVYMDFDVFFIHDARPLLTTGFESVSGREPAGLMTAGIFFSRKRSTLLNLWMERMHQVFDGGWTTHSNGLMTR IGEQLIQQNRKLLVLDESAFTPVTWESQGIKELLEVHDDVPSMLEHHSPGDKLALLNHYDEPLPSWAINFNKSYS IHAFHIEEEGGNPVTPRKVLQRQSNIGRALYPIVRNMYHRGLVSLDDE |
| Coding | >Ophio5|3937 ATGATGCACCGGTCTTCTTCGGTGACTCTGATCATCGCTGCTCTCTTTGTCATTCTCTTGACATGGCCCTATCAC CGACTCAGCTGGGAGGCTATCAGGACCAGAGCGGTCTCCTTACGGCCTAACAAGGGGATTCCGAATACCGTTCAT TTCATCTTTCTGCTGAAAGAGCCTGACGACGACTTTCCCTTTGCCTTTTCCCACTATCTTTCCGTCTATTCCGCC TGGTATTATCTGCAGCCGAGCACCATCTATCTTCACACCGACGCTGGTCATGGGCAGATTCATCGGGCGCGACAA GGCCTGGCTGGAAAATGGGCACAGCTCATCATGGAGATGCCCGGCTTGATCATAAACCGTGTCAAAGCCCCTGCA CAAACGAATCACGGTGTCGAGATCGTCGAGATGGCGCACAAATCTGATTTTATTCGCGTTCATGTCCTTCATAAA CTCGGGGGGGTTTACATGGACTTTGACGTCTTCTTCATCCACGATGCTCGACCCCTACTCACGACCGGATTCGAA TCCGTCAGCGGACGAGAACCGGCCGGCTTGATGACGGCCGGCATATTCTTCTCTCGGAAACGAAGCACGCTGTTG AATCTCTGGATGGAGCGAATGCATCAAGTCTTCGATGGGGGATGGACTACCCATTCCAACGGTCTGATGACGCGA ATTGGTGAGCAGCTCATCCAGCAAAATCGAAAGCTGCTTGTCTTGGACGAGTCCGCCTTTACACCCGTCACTTGG GAATCGCAGGGTATCAAGGAGCTCCTCGAGGTGCACGACGACGTGCCGTCCATGCTTGAACATCACAGCCCGGGA GATAAGCTGGCTTTGCTGAACCACTACGACGAGCCTCTTCCGTCATGGGCCATCAACTTCAACAAGTCGTACAGC ATACATGCCTTTCACATTGAAGAGGAGGGTGGGAATCCAGTCACGCCACGCAAAGTGCTGCAGCGACAAAGCAAC ATCGGCCGAGCATTATACCCCATCGTCAGGAACATGTACCACCGAGGCCTCGTTTCGCTCGACGATGAA |
| Transcript | >Ophio5|3937 ATGATGCACCGGTCTTCTTCGGTGACTCTGATCATCGCTGCTCTCTTTGTCATTCTCTTGACATGGCCCTATCAC CGACTCAGCTGGGAGGCTATCAGGACCAGAGCGGTCTCCTTACGGCCTAACAAGGGGATTCCGAATACCGTTCAT TTCATCTTTCTGCTGAAAGAGCCTGACGACGACTTTCCCTTTGCCTTTTCCCACTATCTTTCCGTCTATTCCGCC TGGTATTATCTGCAGCCGAGCACCATCTATCTTCACACCGACGCTGGTCATGGGCAGATTCATCGGGCGCGACAA GGCCTGGCTGGAAAATGGGCACAGCTCATCATGGAGATGCCCGGCTTGATCATAAACCGTGTCAAAGCCCCTGCA CAAACGAATCACGGTGTCGAGATCGTCGAGATGGCGCACAAATCTGATTTTATTCGCGTTCATGTCCTTCATAAA CTCGGGGGGGTTTACATGGACTTTGACGTCTTCTTCATCCACGATGCTCGACCCCTACTCACGACCGGATTCGAA TCCGTCAGCGGACGAGAACCGGCCGGCTTGATGACGGCCGGCATATTCTTCTCTCGGAAACGAAGCACGCTGTTG AATCTCTGGATGGAGCGAATGCATCAAGTCTTCGATGGGGGATGGACTACCCATTCCAACGGTCTGATGACGCGA ATTGGTGAGCAGCTCATCCAGCAAAATCGAAAGCTGCTTGTCTTGGACGAGTCCGCCTTTACACCCGTCACTTGG GAATCGCAGGGTATCAAGGAGCTCCTCGAGGTGCACGACGACGTGCCGTCCATGCTTGAACATCACAGCCCGGGA GATAAGCTGGCTTTGCTGAACCACTACGACGAGCCTCTTCCGTCATGGGCCATCAACTTCAACAAGTCGTACAGC ATACATGCCTTTCACATTGAAGAGGAGGGTGGGAATCCAGTCACGCCACGCAAAGTGCTGCAGCGACAAAGCAAC ATCGGCCGAGCATTATACCCCATCGTCAGGAACATGTACCACCGAGGCCTCGTTTCGCTCGACGATGAATGA |
| Gene | >Ophio5|3937 ATGATGCACCGGTCTTCTTCGGTGACTCTGATCATCGCTGCTCTCTTTGTCATTCTCTTGACATGGCCCTATCAC CGACTCAGCTGGGAGGCTATCAGGACCAGAGCGGTCTCCTTACGGCCTAACAAGGGGATTCCGAATACCGTTCAT TTCATCTTTCTGCTGAAAGAGCCTGACGACGACTTTCCCTTTGCCTTTTCCCACTATCTTTCCGTCTATTCCGCC TGGTATTATCTGCAGCCGAGCACCATCTATCTTCACACCGACGCTGGTCATGGGCAGATTCATCGGGCGCGACAA GGCCTGGCTGGAAAATGGGCACAGCTCATCATGGAGATGCCCGGCTTGATCATAAACCGTGTCAAAGCCCCTGCA CAAACGAATCACGGTGTCGAGATCGTCGAGATGGCGCACAAATCTGATTTTATTCGCGTTCATGTCCTTCATAAA CTCGGGGGGGTTTACATGGACTTTGACGTCTTCTTCATCCACGATGCTCGACCCCTACTCACGACCGGATTCGAA TCCGTCAGCGGACGAGAACCGGCCGGCTTGATGACGGCCGGCATATTCTTCTCTCGGAAACGAAGCACGCTGTTG AATCTCTGGATGGAGCGAATGCATCAAGTCTTCGATGGGGGATGGACTACCCATTCCAACGGTCTGATGACGCGA ATTGGTGAGCAGCTCATCCAGCAAAATCGAAAGCTGCTTGTCTTGGACGAGTCCGCCTTTACACCCGTCACTTGG GAATCGCAGGGTATCAAGGAGCTCCTCGAGGTGCACGACGACGTGCCGTCCATGCTTGAACATCACAGCCCGGGA GATAAGCTGGCTTTGCTGAACCACTACGACGAGCCTCTTCCGTCATGGGCCATCAACTTCAACAAGTCGTACAGC ATACATGCCTTTCACATTGAAGAGGAGGGTGGGAATCCAGTCACGCCACGCAAAGTGCTGCAGCGACAAAGCAAC ATCGGCCGAGCATTATACCCCATCGTCAGGAACATGTACCACCGAGGCCTCGTTTCGCTCGACGATGAATGA |