Protein ID | Ophio5|3937 |
Gene name | |
Location | scaffold_307:21743..22790 |
Strand | - |
Gene length (bp) | 1047 |
Transcript length (bp) | 1047 |
Coding sequence length (bp) | 1044 |
Protein length (aa) | 348 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04488 | Gly_transf_sug | Glycosyltransferase sugar-binding region containing DXD motif | 2.0E-07 | 132 | 165 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum|Golgi apparatus | Signal peptide|Transmembrane domain | 0.1504 | 0.1483 | 0.1872 | 0.2037 | 0.0632 | 0.0176 | 0.6315 | 0.1743 | 0.7486 | 0.0113 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 24 | 17 |
Orthofinder run ID | 4 |
Orthogroup | 154 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|3937 MMHRSSSVTLIIAALFVILLTWPYHRLSWEAIRTRAVSLRPNKGIPNTVHFIFLLKEPDDDFPFAFSHYLSVYSA WYYLQPSTIYLHTDAGHGQIHRARQGLAGKWAQLIMEMPGLIINRVKAPAQTNHGVEIVEMAHKSDFIRVHVLHK LGGVYMDFDVFFIHDARPLLTTGFESVSGREPAGLMTAGIFFSRKRSTLLNLWMERMHQVFDGGWTTHSNGLMTR IGEQLIQQNRKLLVLDESAFTPVTWESQGIKELLEVHDDVPSMLEHHSPGDKLALLNHYDEPLPSWAINFNKSYS IHAFHIEEEGGNPVTPRKVLQRQSNIGRALYPIVRNMYHRGLVSLDDE |
Coding | >Ophio5|3937 ATGATGCACCGGTCTTCTTCGGTGACTCTGATCATCGCTGCTCTCTTTGTCATTCTCTTGACATGGCCCTATCAC CGACTCAGCTGGGAGGCTATCAGGACCAGAGCGGTCTCCTTACGGCCTAACAAGGGGATTCCGAATACCGTTCAT TTCATCTTTCTGCTGAAAGAGCCTGACGACGACTTTCCCTTTGCCTTTTCCCACTATCTTTCCGTCTATTCCGCC TGGTATTATCTGCAGCCGAGCACCATCTATCTTCACACCGACGCTGGTCATGGGCAGATTCATCGGGCGCGACAA GGCCTGGCTGGAAAATGGGCACAGCTCATCATGGAGATGCCCGGCTTGATCATAAACCGTGTCAAAGCCCCTGCA CAAACGAATCACGGTGTCGAGATCGTCGAGATGGCGCACAAATCTGATTTTATTCGCGTTCATGTCCTTCATAAA CTCGGGGGGGTTTACATGGACTTTGACGTCTTCTTCATCCACGATGCTCGACCCCTACTCACGACCGGATTCGAA TCCGTCAGCGGACGAGAACCGGCCGGCTTGATGACGGCCGGCATATTCTTCTCTCGGAAACGAAGCACGCTGTTG AATCTCTGGATGGAGCGAATGCATCAAGTCTTCGATGGGGGATGGACTACCCATTCCAACGGTCTGATGACGCGA ATTGGTGAGCAGCTCATCCAGCAAAATCGAAAGCTGCTTGTCTTGGACGAGTCCGCCTTTACACCCGTCACTTGG GAATCGCAGGGTATCAAGGAGCTCCTCGAGGTGCACGACGACGTGCCGTCCATGCTTGAACATCACAGCCCGGGA GATAAGCTGGCTTTGCTGAACCACTACGACGAGCCTCTTCCGTCATGGGCCATCAACTTCAACAAGTCGTACAGC ATACATGCCTTTCACATTGAAGAGGAGGGTGGGAATCCAGTCACGCCACGCAAAGTGCTGCAGCGACAAAGCAAC ATCGGCCGAGCATTATACCCCATCGTCAGGAACATGTACCACCGAGGCCTCGTTTCGCTCGACGATGAA |
Transcript | >Ophio5|3937 ATGATGCACCGGTCTTCTTCGGTGACTCTGATCATCGCTGCTCTCTTTGTCATTCTCTTGACATGGCCCTATCAC CGACTCAGCTGGGAGGCTATCAGGACCAGAGCGGTCTCCTTACGGCCTAACAAGGGGATTCCGAATACCGTTCAT TTCATCTTTCTGCTGAAAGAGCCTGACGACGACTTTCCCTTTGCCTTTTCCCACTATCTTTCCGTCTATTCCGCC TGGTATTATCTGCAGCCGAGCACCATCTATCTTCACACCGACGCTGGTCATGGGCAGATTCATCGGGCGCGACAA GGCCTGGCTGGAAAATGGGCACAGCTCATCATGGAGATGCCCGGCTTGATCATAAACCGTGTCAAAGCCCCTGCA CAAACGAATCACGGTGTCGAGATCGTCGAGATGGCGCACAAATCTGATTTTATTCGCGTTCATGTCCTTCATAAA CTCGGGGGGGTTTACATGGACTTTGACGTCTTCTTCATCCACGATGCTCGACCCCTACTCACGACCGGATTCGAA TCCGTCAGCGGACGAGAACCGGCCGGCTTGATGACGGCCGGCATATTCTTCTCTCGGAAACGAAGCACGCTGTTG AATCTCTGGATGGAGCGAATGCATCAAGTCTTCGATGGGGGATGGACTACCCATTCCAACGGTCTGATGACGCGA ATTGGTGAGCAGCTCATCCAGCAAAATCGAAAGCTGCTTGTCTTGGACGAGTCCGCCTTTACACCCGTCACTTGG GAATCGCAGGGTATCAAGGAGCTCCTCGAGGTGCACGACGACGTGCCGTCCATGCTTGAACATCACAGCCCGGGA GATAAGCTGGCTTTGCTGAACCACTACGACGAGCCTCTTCCGTCATGGGCCATCAACTTCAACAAGTCGTACAGC ATACATGCCTTTCACATTGAAGAGGAGGGTGGGAATCCAGTCACGCCACGCAAAGTGCTGCAGCGACAAAGCAAC ATCGGCCGAGCATTATACCCCATCGTCAGGAACATGTACCACCGAGGCCTCGTTTCGCTCGACGATGAATGA |
Gene | >Ophio5|3937 ATGATGCACCGGTCTTCTTCGGTGACTCTGATCATCGCTGCTCTCTTTGTCATTCTCTTGACATGGCCCTATCAC CGACTCAGCTGGGAGGCTATCAGGACCAGAGCGGTCTCCTTACGGCCTAACAAGGGGATTCCGAATACCGTTCAT TTCATCTTTCTGCTGAAAGAGCCTGACGACGACTTTCCCTTTGCCTTTTCCCACTATCTTTCCGTCTATTCCGCC TGGTATTATCTGCAGCCGAGCACCATCTATCTTCACACCGACGCTGGTCATGGGCAGATTCATCGGGCGCGACAA GGCCTGGCTGGAAAATGGGCACAGCTCATCATGGAGATGCCCGGCTTGATCATAAACCGTGTCAAAGCCCCTGCA CAAACGAATCACGGTGTCGAGATCGTCGAGATGGCGCACAAATCTGATTTTATTCGCGTTCATGTCCTTCATAAA CTCGGGGGGGTTTACATGGACTTTGACGTCTTCTTCATCCACGATGCTCGACCCCTACTCACGACCGGATTCGAA TCCGTCAGCGGACGAGAACCGGCCGGCTTGATGACGGCCGGCATATTCTTCTCTCGGAAACGAAGCACGCTGTTG AATCTCTGGATGGAGCGAATGCATCAAGTCTTCGATGGGGGATGGACTACCCATTCCAACGGTCTGATGACGCGA ATTGGTGAGCAGCTCATCCAGCAAAATCGAAAGCTGCTTGTCTTGGACGAGTCCGCCTTTACACCCGTCACTTGG GAATCGCAGGGTATCAAGGAGCTCCTCGAGGTGCACGACGACGTGCCGTCCATGCTTGAACATCACAGCCCGGGA GATAAGCTGGCTTTGCTGAACCACTACGACGAGCCTCTTCCGTCATGGGCCATCAACTTCAACAAGTCGTACAGC ATACATGCCTTTCACATTGAAGAGGAGGGTGGGAATCCAGTCACGCCACGCAAAGTGCTGCAGCGACAAAGCAAC ATCGGCCGAGCATTATACCCCATCGTCAGGAACATGTACCACCGAGGCCTCGTTTCGCTCGACGATGAATGA |