Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3924
Gene name
Locationscaffold_306:15789..16256
Strand-
Gene length (bp)467
Transcript length (bp)399
Coding sequence length (bp)396
Protein length (aa) 132

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02656 DUF202 Domain of unknown function (DUF202) 6.9E-16 24 85

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9UR17|VTC1_SCHPO Vacuolar transporter chaperone 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nrf1 PE=2 SV=1 1 120 5.0E-55
sp|P40046|VTC1_YEAST Vacuolar transporter chaperone 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC1 PE=1 SV=3 1 120 2.0E-52
sp|P78810|VTC4_SCHPO Vacuolar transporter chaperone 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc4 PE=1 SV=2 9 118 8.0E-23
sp|P47075|VTC4_YEAST Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC4 PE=1 SV=2 7 116 2.0E-21
sp|O13718|VTC2_SCHPO Vacuolar transporter chaperone 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc2 PE=1 SV=1 14 122 6.0E-15
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9UR17|VTC1_SCHPO Vacuolar transporter chaperone 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nrf1 PE=2 SV=1 1 120 5.0E-55
sp|P40046|VTC1_YEAST Vacuolar transporter chaperone 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC1 PE=1 SV=3 1 120 2.0E-52
sp|P78810|VTC4_SCHPO Vacuolar transporter chaperone 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc4 PE=1 SV=2 9 118 8.0E-23
sp|P47075|VTC4_YEAST Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC4 PE=1 SV=2 7 116 2.0E-21
sp|O13718|VTC2_SCHPO Vacuolar transporter chaperone 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc2 PE=1 SV=1 14 122 6.0E-15
sp|P43585|VTC2_YEAST Vacuolar transporter chaperone 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC2 PE=1 SV=1 16 129 1.0E-12
sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC3 PE=1 SV=1 16 128 2.0E-12
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 69 0.5

Transmembrane Domains

Domain # Start End Length
1 32 54 22
2 57 79 22
3 99 121 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3924
MSSQPLLQTAPGKRIALPTRVEPKVFFANERTFLSWLNFTVILGALAVGMLNFGDRVAFISAFLFTGVAMLTMLY
ALVTYHWRAKSIRIRGQAGFDDRFGPTLLAIILLLAVVVNFVLRIADQTKKQRKGGA
Coding >Ophio5|3924
ATGTCCTCTCAGCCGCTTCTGCAGACGGCGCCGGGCAAGCGCATTGCCCTGCCGACGCGGGTCGAGCCAAAGGTC
TTCTTCGCCAACGAGCGCACCTTTCTCTCATGGCTCAACTTTACCGTCATTCTCGGCGCCTTGGCCGTCGGCATG
CTCAACTTTGGCGATCGCGTCGCCTTCATCTCTGCCTTTCTTTTCACCGGCGTTGCCATGCTGACGATGCTCTAC
GCCCTCGTCACCTATCACTGGAGAGCAAAGTCGATCCGGATAAGGGGTCAGGCCGGATTTGACGACCGTTTTGGG
CCCACTCTACTGGCCATCATTCTGCTGCTTGCTGTTGTTGTCAACTTTGTTCTTCGCATCGCCGACCAGACGAAG
AAGCAGCGCAAAGGAGGGGCG
Transcript >Ophio5|3924
ATGTCCTCTCAGCCGCTTCTGCAGACGGCGCCGGGCAAGCGCATTGCCCTGCCGACGCGGGTCGAGCCAAAGGTC
TTCTTCGCCAACGAGCGCACCTTTCTCTCATGGCTCAACTTTACCGTCATTCTCGGCGCCTTGGCCGTCGGCATG
CTCAACTTTGGCGATCGCGTCGCCTTCATCTCTGCCTTTCTTTTCACCGGCGTTGCCATGCTGACGATGCTCTAC
GCCCTCGTCACCTATCACTGGAGAGCAAAGTCGATCCGGATAAGGGGTCAGGCCGGATTTGACGACCGTTTTGGG
CCCACTCTACTGGCCATCATTCTGCTGCTTGCTGTTGTTGTCAACTTTGTTCTTCGCATCGCCGACCAGACGAAG
AAGCAGCGCAAAGGAGGGGCGTAG
Gene >Ophio5|3924
ATGTCCTCTCAGCCGCTTCTGCAGACGGCGCCGGGTACGAATCGATCTTTTCTTTTCCCTTGCTTCTCACTGGGC
TATACCATGTTGACGACAGGCGCGCAGGCAAGCGCATTGCCCTGCCGACGCGGGTCGAGCCAAAGGTCTTCTTCG
CCAACGAGCGCACCTTTCTCTCATGGCTCAACTTTACCGTCATTCTCGGCGCCTTGGCCGTCGGCATGCTCAACT
TTGGCGATCGCGTCGCCTTCATCTCTGCCTTTCTTTTCACCGGCGTTGCCATGCTGACGATGCTCTACGCCCTCG
TCACCTATCACTGGAGAGCAAAGTCGATCCGGATAAGGGGTCAGGCCGGATTTGACGACCGTTTTGGGCCCACTC
TACTGGCCATCATTCTGCTGCTTGCTGTTGTTGTCAACTTTGTTCTTCGCATCGCCGACCAGACGAAGAAGCAGC
GCAAAGGAGGGGCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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