Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3923
Gene name
Locationscaffold_306:14633..15248
Strand+
Gene length (bp)615
Transcript length (bp)615
Coding sequence length (bp)612
Protein length (aa) 204

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01918 Alba Alba 1.9E-06 71 130

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3923
MADSSLLASVDSSAASMPTTTTSSRRQRPLDASEEQRKRPRHQQPAALSAPHEAIITALQAQNDVLVASVISSTQ
IRKRVSSATAHLATTTSPKPRLVLLHARPAQVSKLITVVEHCKRLLRPCYQYNQLFDLPAATPLTGSDDDGDEFQ
VMNSSRLEKAAAVPPSRRPVKSLRVFLAVQPIPELEARAGVTLQSSDVAVSSGE
Coding >Ophio5|3923
ATGGCCGATTCTTCACTCTTGGCCAGCGTCGATTCATCAGCAGCATCAATGCCGACGACCACGACCAGTTCCCGG
CGGCAGCGGCCTCTTGACGCATCGGAAGAGCAGCGCAAGCGGCCACGGCATCAACAGCCCGCAGCGCTGTCCGCC
CCTCACGAGGCCATCATCACCGCTCTCCAAGCTCAGAACGACGTGCTCGTCGCGTCCGTCATCTCCTCGACCCAG
ATCCGCAAGCGCGTCTCCTCCGCCACGGCTCACCTCGCCACGACGACGTCTCCGAAACCGCGCCTCGTCTTGCTA
CACGCGCGCCCCGCCCAAGTGAGCAAGCTGATAACCGTCGTCGAGCACTGCAAGCGCCTCTTGCGGCCCTGTTAC
CAGTACAATCAGCTATTCGACCTGCCTGCCGCGACGCCGCTGACGGGATCCGACGATGACGGCGACGAGTTTCAA
GTCATGAACTCCAGTCGGCTCGAAAAGGCCGCTGCCGTGCCGCCGTCGCGCCGGCCTGTCAAGTCGTTGAGGGTC
TTCCTCGCCGTGCAGCCGATACCGGAGCTCGAGGCAAGGGCCGGCGTCACGTTGCAGTCGAGCGACGTTGCTGTG
TCGTCGGGCGAG
Transcript >Ophio5|3923
ATGGCCGATTCTTCACTCTTGGCCAGCGTCGATTCATCAGCAGCATCAATGCCGACGACCACGACCAGTTCCCGG
CGGCAGCGGCCTCTTGACGCATCGGAAGAGCAGCGCAAGCGGCCACGGCATCAACAGCCCGCAGCGCTGTCCGCC
CCTCACGAGGCCATCATCACCGCTCTCCAAGCTCAGAACGACGTGCTCGTCGCGTCCGTCATCTCCTCGACCCAG
ATCCGCAAGCGCGTCTCCTCCGCCACGGCTCACCTCGCCACGACGACGTCTCCGAAACCGCGCCTCGTCTTGCTA
CACGCGCGCCCCGCCCAAGTGAGCAAGCTGATAACCGTCGTCGAGCACTGCAAGCGCCTCTTGCGGCCCTGTTAC
CAGTACAATCAGCTATTCGACCTGCCTGCCGCGACGCCGCTGACGGGATCCGACGATGACGGCGACGAGTTTCAA
GTCATGAACTCCAGTCGGCTCGAAAAGGCCGCTGCCGTGCCGCCGTCGCGCCGGCCTGTCAAGTCGTTGAGGGTC
TTCCTCGCCGTGCAGCCGATACCGGAGCTCGAGGCAAGGGCCGGCGTCACGTTGCAGTCGAGCGACGTTGCTGTG
TCGTCGGGCGAGTAG
Gene >Ophio5|3923
ATGGCCGATTCTTCACTCTTGGCCAGCGTCGATTCATCAGCAGCATCAATGCCGACGACCACGACCAGTTCCCGG
CGGCAGCGGCCTCTTGACGCATCGGAAGAGCAGCGCAAGCGGCCACGGCATCAACAGCCCGCAGCGCTGTCCGCC
CCTCACGAGGCCATCATCACCGCTCTCCAAGCTCAGAACGACGTGCTCGTCGCGTCCGTCATCTCCTCGACCCAG
ATCCGCAAGCGCGTCTCCTCCGCCACGGCTCACCTCGCCACGACGACGTCTCCGAAACCGCGCCTCGTCTTGCTA
CACGCGCGCCCCGCCCAAGTGAGCAAGCTGATAACCGTCGTCGAGCACTGCAAGCGCCTCTTGCGGCCCTGTTAC
CAGTACAATCAGCTATTCGACCTGCCTGCCGCGACGCCGCTGACGGGATCCGACGATGACGGCGACGAGTTTCAA
GTCATGAACTCCAGTCGGCTCGAAAAGGCCGCTGCCGTGCCGCCGTCGCGCCGGCCTGTCAAGTCGTTGAGGGTC
TTCCTCGCCGTGCAGCCGATACCGGAGCTCGAGGCAAGGGCCGGCGTCACGTTGCAGTCGAGCGACGTTGCTGTG
TCGTCGGGCGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail