Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|392
Gene name
Locationscaffold_1093:4..2267
Strand+
Gene length (bp)2263
Transcript length (bp)1947
Coding sequence length (bp)1944
Protein length (aa) 648

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04082 Fungal_trans Fungal specific transcription factor domain 2.4E-08 259 346

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q10086|YAO7_SCHPO Uncharacterized transcriptional regulatory protein C11D3.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.07c PE=3 SV=3 257 560 5.0E-08
sp|O94490|YC79_SCHPO Uncharacterized transcriptional regulatory protein C417.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC417.09c PE=3 SV=1 257 392 6.0E-07
sp|Q9C0Z1|YKM1_SCHPO Uncharacterized transcriptional regulatory protein PB24D3.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.01 PE=3 SV=2 257 520 6.0E-07

GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0003677 DNA binding Yes
GO:0046872 metal ion binding No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0008152 metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003676 nucleic acid binding No
GO:0090304 nucleic acid metabolic process No
GO:0044238 primary metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:0019438 aromatic compound biosynthetic process No
GO:0016070 RNA metabolic process No
GO:0009058 biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0046914 transition metal ion binding No
GO:0097159 organic cyclic compound binding No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0009059 macromolecule biosynthetic process No
GO:1901363 heterocyclic compound binding No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0032774 RNA biosynthetic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 498 520 22

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 1.41 0.22 2.60
CcL In ants, during behavior modification 291.36 64.48 518.24
CcD In ants, recently dead 105.63 54.62 156.64

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.003389 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|392
MPNPPLPPPPPPPPPQKKTKSSRNERKIDEIISRLGSLEILLHGREPAGQQLSLDGHSVAVPTASSGSDYDSAND
ESPFGPDSGLAKQTNFAREFLEKAAQRSTLPADNPEMTTALNNLSELVDLQKRPFANFGLKVHFPLRQRVPPGGL
SHMPMPPYGAVVALLDKMKNSPPTLFGITCSIVGITDFDGLCRAAYYPASAPDESTEGNFIIVNAMLYNLFTEQF
SLSTDPAVQGEYGSYIQQCRVNIETGLASTPLILSATVENVQALLLGALYAVDISRAFVAWHLISTAARLCQAGR
FHHADALRNNPAHLSRQKRIIFWHVYSLERGICLGLGRSSVILECDIDISREPDLEGFGSSEITGLFGLWIRIGC
LQGRIYELLYSRAATAKSNKDLIRSAETLAVECRELEIKSAEYRKQLYSCHANLHSSDVVHLFLRGEEIQFLATL
TLVYRMIPASGSSISRFSNECLDAARRAMRVHQECVRFIDNSNCVKFIYIHWYLTITPFTPFFVLICYVIETLSA
QDLQILQDFVMSFASCRGDSETIDKFYKLCHVMYDAVRIYVESRMQLQQDQATAPIGDEFGMYLSQLGLLQEENQ
QAVPRRQYDANGQKAVPTNQMAEFLLGNRNIMGLLEEDMSQIDFSQWM
Coding >Ophio5|392
ATGCCCAACCCCCCCCTCCCGCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAACAAAATCCTCACGAAACGAG
CGCAAAATCGACGAAATCATCAGTCGCCTCGGCAGCCTCGAGATCCTCCTCCACGGTAGAGAACCAGCCGGCCAG
CAATTAAGCCTCGACGGCCACTCCGTCGCGGTGCCGACGGCGTCGTCAGGATCCGACTATGACAGCGCAAACGAC
GAGTCTCCCTTCGGGCCGGACTCGGGCCTCGCCAAGCAGACCAATTTTGCGCGCGAGTTTCTCGAAAAGGCTGCT
CAGCGATCGACGTTGCCGGCTGACAACCCGGAGATGACGACGGCGCTCAATAACCTCAGCGAGCTGGTCGACTTG
CAGAAACGACCGTTTGCCAACTTTGGTCTCAAGGTTCACTTTCCCCTCAGGCAGCGGGTGCCGCCTGGTGGCCTT
TCTCATATGCCCATGCCCCCTTATGGTGCTGTTGTGGCGCTGCTGGATAAGATGAAGAACTCGCCGCCGACGCTG
TTTGGCATCACCTGCTCCATCGTGGGCATCACCGACTTCGACGGTCTCTGTCGGGCCGCCTACTATCCGGCCTCG
GCCCCGGACGAGTCGACCGAAGGCAACTTCATCATCGTCAACGCCATGCTGTACAACCTCTTTACCGAGCAGTTC
TCCCTCTCCACCGACCCGGCCGTCCAGGGCGAGTACGGGTCCTATATACAGCAGTGCCGGGTCAACATCGAGACC
GGCCTCGCCAGCACGCCGCTCATCCTCTCCGCCACGGTCGAGAACGTCCAGGCTCTGCTCCTAGGGGCCCTCTAC
GCCGTCGACATCTCGCGAGCGTTCGTGGCCTGGCACCTCATCTCCACTGCAGCCCGACTCTGCCAGGCCGGCCGC
TTCCACCACGCCGACGCGCTGAGGAACAACCCGGCTCACCTTTCGAGACAGAAGAGAATCATCTTCTGGCATGTC
TATTCCCTGGAGAGAGGCATCTGCTTAGGCCTGGGCCGCTCGTCCGTCATCCTCGAATGCGACATTGACATTTCT
CGCGAGCCCGATCTCGAAGGCTTCGGGAGCTCGGAAATAACGGGCCTCTTCGGGCTATGGATCAGGATAGGCTGT
CTGCAGGGTCGCATTTACGAGTTGCTATACAGCCGAGCGGCAACGGCCAAGTCGAACAAGGATCTGATCCGGAGC
GCCGAGACGCTGGCGGTCGAGTGTCGAGAGCTCGAGATCAAGTCGGCAGAGTATCGGAAACAGCTGTACAGCTGC
CACGCCAATCTTCACTCGTCCGACGTCGTCCACCTCTTCCTCCGCGGCGAAGAGATCCAGTTCCTGGCTACCCTG
ACTCTCGTCTACCGGATGATTCCCGCGTCGGGGAGCTCCATCAGCCGTTTCTCCAACGAGTGTCTGGACGCGGCT
CGTAGGGCAATGCGTGTTCATCAAGAGTGCGTCCGTTTCATCGACAACAGCAACTGCGTCAAGTTCATCTATATT
CACTGGTATCTCACCATCACGCCCTTCACCCCCTTTTTCGTCCTGATCTGCTACGTTATCGAAACGCTCTCAGCC
CAGGATCTGCAAATTCTGCAAGACTTTGTCATGTCCTTTGCCTCCTGCCGCGGCGACTCGGAAACCATCGACAAG
TTCTACAAGCTGTGTCACGTCATGTACGACGCTGTCAGGATATACGTCGAGTCCAGGATGCAGCTTCAGCAGGAC
CAGGCTACGGCTCCCATCGGGGACGAGTTTGGCATGTATCTGAGCCAGCTGGGTTTGTTACAGGAAGAGAACCAG
CAAGCCGTTCCCAGAAGGCAATATGATGCCAACGGACAGAAGGCCGTCCCGACTAATCAGATGGCCGAATTTCTG
CTGGGCAACCGGAACATCATGGGCCTGCTGGAAGAGGACATGTCGCAGATTGACTTTTCTCAATGGATG
Transcript >Ophio5|392
ATGCCCAACCCCCCCCTCCCGCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAACAAAATCCTCACGAAACGAG
CGCAAAATCGACGAAATCATCAGTCGCCTCGGCAGCCTCGAGATCCTCCTCCACGGTAGAGAACCAGCCGGCCAG
CAATTAAGCCTCGACGGCCACTCCGTCGCGGTGCCGACGGCGTCGTCAGGATCCGACTATGACAGCGCAAACGAC
GAGTCTCCCTTCGGGCCGGACTCGGGCCTCGCCAAGCAGACCAATTTTGCGCGCGAGTTTCTCGAAAAGGCTGCT
CAGCGATCGACGTTGCCGGCTGACAACCCGGAGATGACGACGGCGCTCAATAACCTCAGCGAGCTGGTCGACTTG
CAGAAACGACCGTTTGCCAACTTTGGTCTCAAGGTTCACTTTCCCCTCAGGCAGCGGGTGCCGCCTGGTGGCCTT
TCTCATATGCCCATGCCCCCTTATGGTGCTGTTGTGGCGCTGCTGGATAAGATGAAGAACTCGCCGCCGACGCTG
TTTGGCATCACCTGCTCCATCGTGGGCATCACCGACTTCGACGGTCTCTGTCGGGCCGCCTACTATCCGGCCTCG
GCCCCGGACGAGTCGACCGAAGGCAACTTCATCATCGTCAACGCCATGCTGTACAACCTCTTTACCGAGCAGTTC
TCCCTCTCCACCGACCCGGCCGTCCAGGGCGAGTACGGGTCCTATATACAGCAGTGCCGGGTCAACATCGAGACC
GGCCTCGCCAGCACGCCGCTCATCCTCTCCGCCACGGTCGAGAACGTCCAGGCTCTGCTCCTAGGGGCCCTCTAC
GCCGTCGACATCTCGCGAGCGTTCGTGGCCTGGCACCTCATCTCCACTGCAGCCCGACTCTGCCAGGCCGGCCGC
TTCCACCACGCCGACGCGCTGAGGAACAACCCGGCTCACCTTTCGAGACAGAAGAGAATCATCTTCTGGCATGTC
TATTCCCTGGAGAGAGGCATCTGCTTAGGCCTGGGCCGCTCGTCCGTCATCCTCGAATGCGACATTGACATTTCT
CGCGAGCCCGATCTCGAAGGCTTCGGGAGCTCGGAAATAACGGGCCTCTTCGGGCTATGGATCAGGATAGGCTGT
CTGCAGGGTCGCATTTACGAGTTGCTATACAGCCGAGCGGCAACGGCCAAGTCGAACAAGGATCTGATCCGGAGC
GCCGAGACGCTGGCGGTCGAGTGTCGAGAGCTCGAGATCAAGTCGGCAGAGTATCGGAAACAGCTGTACAGCTGC
CACGCCAATCTTCACTCGTCCGACGTCGTCCACCTCTTCCTCCGCGGCGAAGAGATCCAGTTCCTGGCTACCCTG
ACTCTCGTCTACCGGATGATTCCCGCGTCGGGGAGCTCCATCAGCCGTTTCTCCAACGAGTGTCTGGACGCGGCT
CGTAGGGCAATGCGTGTTCATCAAGAGTGCGTCCGTTTCATCGACAACAGCAACTGCGTCAAGTTCATCTATATT
CACTGGTATCTCACCATCACGCCCTTCACCCCCTTTTTCGTCCTGATCTGCTACGTTATCGAAACGCTCTCAGCC
CAGGATCTGCAAATTCTGCAAGACTTTGTCATGTCCTTTGCCTCCTGCCGCGGCGACTCGGAAACCATCGACAAG
TTCTACAAGCTGTGTCACGTCATGTACGACGCTGTCAGGATATACGTCGAGTCCAGGATGCAGCTTCAGCAGGAC
CAGGCTACGGCTCCCATCGGGGACGAGTTTGGCATGTATCTGAGCCAGCTGGGTTTGTTACAGGAAGAGAACCAG
CAAGCCGTTCCCAGAAGGCAATATGATGCCAACGGACAGAAGGCCGTCCCGACTAATCAGATGGCCGAATTTCTG
CTGGGCAACCGGAACATCATGGGCCTGCTGGAAGAGGACATGTCGCAGATTGACTTTTCTCAATGGATGTAG
Gene >Ophio5|392
ATGCCCAACCCCCCCCTCCCGCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAACAAAATCCTCACGAAAGTGA
ACATGGCTACGCGAGACGACTGGCTGATGAGGGGGAGATAAAAAAAAAAAAAGCGAGCGCAAAATCGACGAAATC
ATCAGTCGCCTCGGCAGCCTCGAGATCCTCCTCCACGGTAGAGAACCAGCCGGCCAGCAATTAAGCCTCGACGGC
CACTCCGTCGCGGTGCCGACGGCGTCGTCAGGATCCGACTATGACAGCGCAAACGACGAGTCTCCCTTCGGGCCG
GACTCGGGCCTCGCCAAGCAGACCAATTTTGCGCGCGAGTTTCTCGAAAAGGCTGCTCAGCGATCGACGTTGCCG
GCTGACAACCCGGAGATGACGACGGCGCTCAATAACCTCAGCGAGCTGGTCGACTTGCAGAAACGACCGTTTGCC
AACTTTGGTCTCAAGGTTCACTTTCCCCTCAGGCAGCGGGTGCCGCCTGGTGGCCTTTCTCATATGCCCATGCCC
CCTTATGGTGCTGTTGTGGCGCTGCTGGATAAGATGAAGAGTGAGACGGCTGCTTTGCTTCTTTTATCTTTGGTC
TTGGATGCTAACGATCAGGGGGCTTTCTTACCAGACTCGCCGCCGACGCTGTTTGGCATCACCTGCTCCATCGTG
GGCATCACCGACTTCGACGGTCTCTGTCGGGCCGCCTACTATCCGGCCTCGGCCCCGGACGAGTCGACCGAAGGC
AACTTCATCATCGTCAACGCCATGCTGTACAACCTCTTTACCGAGCAGTTCTCCCTCTCCACCGACCCGGCCGTC
CAGGGCGAGTACGGGTCCTATATACAGCAGTGCCGGGTCAACATCGAGACCGGCCTCGCCAGCACGCCGCTCATC
CTCTCCGCCACGGTCGAGAACGTCCAGGCTCTGCTCCTAGGGGTAAGCCCACGCCGCATTCTTTCGTCGTCGAAA
ACCCTTTACGGTCGGCTGATGAAGACACGAGGCCCTCTACGCCGTCGACATCTCGCGAGCGTTCGTGGCCTGGCA
CCTCATCTCCACTGCAGCCCGACTCTGCCAGGCCGGCCGCTTCCACCACGCCGACGCGCTGAGGAACAACCCGGC
TCACCTTTCGAGACAGAAGAGAATCATCTTCTGGCATGTCTATTCCCTGGAGAGAGGCATCTGCTTAGGCCTGGG
CCGCTCGTCCGTCATCCTCGAATGCGACATTGACATTTCTCGCGAGCCCGATCTCGAAGGCTTCGGGAGCTCGGA
AATAACGGGCCTCTTCGGGCTATGGATCAGGATAGGCTGTCTGCAGGGTCGCATTTACGAGTTGCTGTAGGGCTC
TCACCCCATTCTCGTCATGGCCCACGAAGCCTACTGACCAATCTCCAGATACAGCCGAGCGGCAACGGCCAAGTC
GAACAAGGATCTGATCCGGAGCGCCGAGACGCTGGCGGTCGAGTGTCGAGAGCTCGAGATCAAGTCGGCAGAGTA
TCGGAAACAGCTGTACAGCTGCCACGCCAATCTTCACTCGTCCGACGTCGTCCACCTCTTCCTCCGCGGCGAAGA
GATCCAGTTCCTGGCTACCCTGACTCTCGTCTACCGGATGATTCCCGCGTCGGGGAGCTCCATCAGCCGTTTCTC
CAACGAGTGTCTGGACGCGGCTCGTAGGGCAATGCGTGTTCATCAAGAGTGCGTCCGTTTCATCGACAACAGCAA
CTGCGTCAAGTTCATCTATATTCACTGGTACGTCATTTTCTTCGAAAGCACCTCGTCTGGGTGGCAGACCACTGA
CTGGCAGCCATTGATCTGTAGGTATCTCACCATCACGCCCTTCACCCCCTTTTTCGTCCTGATCTGCTACGTTAT
CGAAACGCTCTCAGCCCAGGATCTGCAAATTCTGCAAGACTTTGTCATGTCCTTTGCCTCCTGCCGCGGCGACTC
GGAAACCATCGACAAGTTCTACAAGCTGTGTCACGTCATGTACGACGCTGTCAGGATATACGTCGAGTCCAGGAT
GCAGCTTCAGCAGGACCAGGCTACGGCTCCCATCGGGGACGAGTTTGGCATGTATCTGAGCCAGCTGGGTTTGTT
ACAGGAAGAGAACCAGCAAGCCGTTCCCAGAAGGCAATATGATGCCAACGGACAGAAGGCCGTCCCGACTAATCA
GATGGCCGAATTTCTGCTGGGCAACCGGAACATCATGGGCCTGCTGGAAGAGGACATGTCGCAGATTGACTTTTC
TCAATGGATGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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