Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3874
Gene name
Locationscaffold_301:1870..2987
Strand+
Gene length (bp)1117
Transcript length (bp)924
Coding sequence length (bp)921
Protein length (aa) 307

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02386 TrkH Cation transport protein 3.6E-74 2 300

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P12685|TRK1_YEAST High-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK1 PE=1 SV=1 2 301 1.0E-66
sp|P28584|TRK2_YEAST Low-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK2 PE=1 SV=1 3 307 3.0E-66
sp|P47946|TRK1_SCHPO Potassium transport protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk1 PE=3 SV=2 2 307 4.0E-63
sp|Q10065|TRK2_SCHPO Potassium transport protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk2 PE=2 SV=1 2 307 1.0E-62
sp|P28569|TRK1_SACUV High-affinity potassium transport protein OS=Saccharomyces uvarum GN=TRK1 PE=3 SV=1 2 301 3.0E-61
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Swissprot ID Swissprot Description Start End E-value
sp|P12685|TRK1_YEAST High-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK1 PE=1 SV=1 2 301 1.0E-66
sp|P28584|TRK2_YEAST Low-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK2 PE=1 SV=1 3 307 3.0E-66
sp|P47946|TRK1_SCHPO Potassium transport protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk1 PE=3 SV=2 2 307 4.0E-63
sp|Q10065|TRK2_SCHPO Potassium transport protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk2 PE=2 SV=1 2 307 1.0E-62
sp|P28569|TRK1_SACUV High-affinity potassium transport protein OS=Saccharomyces uvarum GN=TRK1 PE=3 SV=1 2 301 3.0E-61
sp|Q54DA4|Y2412_DICDI Putative potassium transport protein DDB_G0292412 OS=Dictyostelium discoideum GN=DDB_G0292412 PE=2 SV=1 2 295 1.0E-24
sp|Q84TI7|HKT1_ARATH Sodium transporter HKT1 OS=Arabidopsis thaliana GN=HKT1 PE=1 SV=1 3 290 2.0E-17
sp|Q8L4K5|HKT9_ORYSJ Probable cation transporter HKT9 OS=Oryza sativa subsp. japonica GN=HKT9 PE=2 SV=1 3 286 1.0E-15
sp|Q7XPF8|HKT4_ORYSJ Cation transporter HKT4 OS=Oryza sativa subsp. japonica GN=HKT4 PE=1 SV=2 3 285 5.0E-15
sp|Q8L481|HKT3_ORYSJ Probable cation transporter HKT3 OS=Oryza sativa subsp. japonica GN=HKT3 PE=2 SV=1 3 286 1.0E-14
sp|Q0JNB6|HKT8_ORYSJ Cation transporter HKT8 OS=Oryza sativa subsp. japonica GN=HKT8 PE=3 SV=1 3 283 1.0E-14
sp|A2WNZ9|HKT8_ORYSI Cation transporter HKT8 OS=Oryza sativa subsp. indica GN=HKT8 PE=2 SV=2 3 283 1.0E-14
sp|Q93XI5|HKT2_ORYSI Cation transporter HKT2 OS=Oryza sativa subsp. indica GN=HKT2 PE=1 SV=1 3 289 4.0E-14
sp|Q0D9S3|HKT1_ORYSJ Cation transporter HKT1 OS=Oryza sativa subsp. japonica GN=HKT1 PE=1 SV=1 3 289 8.0E-13
sp|A2YGP9|HKT1_ORYSI Cation transporter HKT1 OS=Oryza sativa subsp. indica GN=HKT1 PE=1 SV=2 3 289 8.0E-13
sp|Q6H501|HKT6_ORYSJ Probable cation transporter HKT6 OS=Oryza sativa subsp. japonica GN=HKT6 PE=2 SV=1 3 254 3.0E-12
sp|Q7XPF7|HKT7_ORYSJ Probable cation transporter HKT7 OS=Oryza sativa subsp. japonica GN=HKT7 PE=2 SV=2 111 290 2.0E-09
sp|O31658|KTRD_BACSU Ktr system potassium uptake protein D OS=Bacillus subtilis (strain 168) GN=ktrD PE=3 SV=1 3 306 2.0E-06
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GO

GO Term Description Terminal node
GO:0006812 cation transport Yes
GO:0008324 cation transmembrane transporter activity Yes
GO:0055085 transmembrane transport Yes
GO:0006811 ion transport No
GO:0009987 cellular process No
GO:0051234 establishment of localization No
GO:0022857 transmembrane transporter activity No
GO:0015075 ion transmembrane transporter activity No
GO:0008150 biological_process No
GO:0005215 transporter activity No
GO:0003674 molecular_function No
GO:0051179 localization No
GO:0006810 transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 23 45 22
2 72 94 22
3 142 164 22
4 207 222 15
5 242 264 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3874
MDNLGFTLTPDSMGHFRDARLPMVVLGILGLVGAGLYPVFLRFFIWALSKLKWPNSGQESLAYLLKHSRRCSMLL
FPAGTTHALLAINAALNIIDTLLIVILDRDSSQVAGLSLGQRLAAAFFQAAASRHAGMTPYDLAKVSPAVQFSLL
VMMYVSVLPIALSIRTPNPSYEEQPVAIFAPETRYYDETRSGLYLLQHLRRQLSRDLWFIFLAIFCLSVSEARKL
KDESDAAFQLFPLFFEVVSAYNNVGISLGAGPGIYSALSTRFSMAGKLVICACMIRGRHRSMPQRLDGAIMLPGE
REDEAEK
Coding >Ophio5|3874
ATGGATAACTTGGGCTTCACCTTGACGCCCGATTCCATGGGCCATTTTCGTGATGCCCGACTACCGATGGTTGTC
TTGGGCATCTTGGGCCTCGTGGGAGCAGGTCTTTATCCCGTCTTCCTCCGCTTCTTCATCTGGGCACTGAGCAAA
CTGAAATGGCCGAATTCAGGCCAAGAGTCGTTGGCTTACTTGCTGAAGCACAGTCGACGATGTTCTATGCTCCTG
TTTCCGGCCGGGACAACCCATGCTTTACTCGCCATCAACGCGGCCCTCAACATCATCGACACTCTACTCATCGTC
ATCCTCGATCGAGACAGCTCCCAAGTTGCAGGCCTGTCTCTCGGACAGCGACTAGCGGCCGCATTCTTCCAAGCC
GCCGCCTCGAGACACGCGGGCATGACGCCCTACGATTTGGCCAAAGTCAGTCCGGCCGTCCAGTTTAGTCTTCTC
GTCATGATGTATGTTTCGGTGCTGCCTATTGCTCTGAGCATCCGTACGCCCAACCCCTCGTACGAGGAGCAGCCC
GTCGCGATATTCGCACCGGAAACCCGTTACTACGACGAGACGAGATCCGGCCTCTATCTTTTACAGCATCTACGG
CGGCAGCTGAGCCGCGACCTTTGGTTCATCTTCCTCGCCATCTTCTGCCTCTCCGTTTCCGAGGCTCGCAAGTTG
AAAGACGAGAGCGATGCGGCCTTTCAGCTATTCCCCCTCTTCTTCGAAGTCGTGTCGGCATACAACAACGTCGGA
ATCTCCCTCGGGGCCGGCCCAGGCATCTATTCAGCACTTAGCACTCGATTTTCCATGGCCGGAAAGCTCGTCATC
TGCGCATGCATGATTCGGGGTCGTCATCGGTCGATGCCGCAACGGCTAGATGGCGCCATCATGCTGCCGGGAGAG
AGAGAGGATGAAGCGGAGAAG
Transcript >Ophio5|3874
ATGGATAACTTGGGCTTCACCTTGACGCCCGATTCCATGGGCCATTTTCGTGATGCCCGACTACCGATGGTTGTC
TTGGGCATCTTGGGCCTCGTGGGAGCAGGTCTTTATCCCGTCTTCCTCCGCTTCTTCATCTGGGCACTGAGCAAA
CTGAAATGGCCGAATTCAGGCCAAGAGTCGTTGGCTTACTTGCTGAAGCACAGTCGACGATGTTCTATGCTCCTG
TTTCCGGCCGGGACAACCCATGCTTTACTCGCCATCAACGCGGCCCTCAACATCATCGACACTCTACTCATCGTC
ATCCTCGATCGAGACAGCTCCCAAGTTGCAGGCCTGTCTCTCGGACAGCGACTAGCGGCCGCATTCTTCCAAGCC
GCCGCCTCGAGACACGCGGGCATGACGCCCTACGATTTGGCCAAAGTCAGTCCGGCCGTCCAGTTTAGTCTTCTC
GTCATGATGTATGTTTCGGTGCTGCCTATTGCTCTGAGCATCCGTACGCCCAACCCCTCGTACGAGGAGCAGCCC
GTCGCGATATTCGCACCGGAAACCCGTTACTACGACGAGACGAGATCCGGCCTCTATCTTTTACAGCATCTACGG
CGGCAGCTGAGCCGCGACCTTTGGTTCATCTTCCTCGCCATCTTCTGCCTCTCCGTTTCCGAGGCTCGCAAGTTG
AAAGACGAGAGCGATGCGGCCTTTCAGCTATTCCCCCTCTTCTTCGAAGTCGTGTCGGCATACAACAACGTCGGA
ATCTCCCTCGGGGCCGGCCCAGGCATCTATTCAGCACTTAGCACTCGATTTTCCATGGCCGGAAAGCTCGTCATC
TGCGCATGCATGATTCGGGGTCGTCATCGGTCGATGCCGCAACGGCTAGATGGCGCCATCATGCTGCCGGGAGAG
AGAGAGGATGAAGCGGAGAAGTGA
Gene >Ophio5|3874
ATGGATAACTTGGGCTTCACCTTGACGCCCGATTCCATGGGCCATTTTCGTGATGCCCGACTACCGATGGTTGTC
TTGGGCATCTTGGGCCTCGTGGGAGCAGGTCTTTATCCCGTCTTCCTCCGCTTCTTCATCTGGGCACTGAGCAAA
CTGAAATGGCCGAATTCAGGCCAAGAGTCGTTGGCTTACTTGCTGAAGCACAGTCGACGATGTTCTATGCTCCTG
TTTCCGGCCGGGACAACCCATGCTTTACTCGCCATCAACGCGGCCCTCAACATCATCGACACTCTACTCATCGTC
ATCCTCGATCGAGACAGCTCCCAAGTTGCAGGCCTGTCTCTCGGACAGCGACTAGCGGCCGCATTCTTCCAAGCC
GCCGCCTCGAGACACGCGGGCATGACGCCCTACGATTTGGCCAAAGTCAGTCCGGCCGTCCAGTTTAGGTGATTT
TTTTCCCTTCCCCCCCCAAAACTCGGCCGTCTTTATTGATGGCCCCCTTTCTGGTTTCCCTTTCCAGTCTTCTCG
TCATGATGTATGTTTCGGTGCTGCCTATTGCTCTGAGCATCCGTACGCCCAACCCCTCGTACGAGGAGCAGCCCG
TCGCGATATTCGCACCGGAAACCCGTTACTACGACGAGACGAGATCCGGCCTCTATCTTTTACAGCATCTACGGC
GGCAGCTGAGCCGCGACCTTTGGTTCATCTTCCTCGCCATCTTCTGCCTCTCCGTTTCCGAGGCTCGCAAGTTGA
AAGACGAGAGCGATGCGGTATGATTCACAGACGATGAACCGAACCCACGTCACTCTTCGCTGACCGAGCCCTCTT
CTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCCTCCCTCTCTGAGCACTCTAAGCATCAAAGGCCTTTCAGCTATT
CCCCCTCTTCTTCGAAGTCGTGTCGGCATACAACAACGTCGGAATCTCCCTCGGGGCCGGCCCAGGCATCTATTC
AGCACTTAGCACTCGATTTTCCATGGCCGGAAAGCTCGTCATCTGCGCATGCATGATTCGGGGTCGTCATCGGTC
GATGCCGCAACGGCTAGATGGCGCCATCATGCTGCCGGGAGAGAGAGAGGATGAAGCGGAGAAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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