© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3873 |
| Gene name | |
| Location | scaffold_301:668..1363 |
| Strand | + |
| Gene length (bp) | 695 |
| Transcript length (bp) | 639 |
| Coding sequence length (bp) | 636 |
| Protein length (aa) | 212 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P28584|TRK2_YEAST | Low-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK2 PE=1 SV=1 | 7 | 182 | 2.0E-16 |
| sp|P28569|TRK1_SACUV | High-affinity potassium transport protein OS=Saccharomyces uvarum GN=TRK1 PE=3 SV=1 | 7 | 154 | 1.0E-14 |
| sp|P12685|TRK1_YEAST | High-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK1 PE=1 SV=1 | 8 | 162 | 1.0E-13 |
| sp|P47946|TRK1_SCHPO | Potassium transport protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk1 PE=3 SV=2 | 4 | 94 | 3.0E-10 |
| sp|Q10065|TRK2_SCHPO | Potassium transport protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk2 PE=2 SV=1 | 1 | 109 | 1.0E-08 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Transmembrane domain | 0.0947 | 0.1703 | 0.0106 | 0.6408 | 0.1494 | 0.0361 | 0.1634 | 0.5676 | 0.0895 | 0.005 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 9 | 31 | 22 |
| 2 | 69 | 91 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.22 | 0.0 | 0.77 |
| CcL | In ants, during behavior modification | 2.61 | 0.0 | 5.70 |
| CcD | In ants, recently dead | 0.00 | 0.0 | 0.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.370789 | no |
| SC16a | CcD | 1.000000 | no |
| CcL | CcD | 0.000286 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 7051 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps australis map64 (Brazil) | OphauB2|968 |
| Ophiocordyceps kimflemingae | Ophio5|3873 (this protein) |
| Ophiocordyceps subramaniannii | Hirsu2|508 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3873 MWKPKLDFIFFHYAWILFCALLALPILSPYGNLDFIDVVFFGASAATDSGLNTVDCNKLALYQQLYIYLIPMVTN AGFINCFLILLRLRWFRKRIDKRRRITQGHHGSRADNNSNLESGLLESRCSVGKSAAAAFDHQCGGGDFPESKPG REEKEVVGSDESMEKPSVEEKQMIREEVGDEQVIRLRPIERVGEASYGTKKTPVSPPLGTPF |
| Coding | >Ophio5|3873 ATGTGGAAACCGAAGCTTGACTTTATCTTCTTTCACTATGCCTGGATCCTTTTCTGTGCCCTCCTTGCTCTTCCC ATCCTCTCTCCTTACGGAAACCTGGATTTCATAGACGTCGTGTTTTTCGGCGCCAGTGCAGCAACGGACTCTGGA CTCAACACGGTCGATTGTAATAAACTGGCGCTCTATCAACAGCTGTACATTTACTTGATCCCCATGGTGACCAAT GCCGGTTTCATAAACTGTTTCCTTATCTTGTTACGCCTGCGCTGGTTTCGGAAACGCATAGACAAGCGCCGACGT ATCACGCAAGGCCATCATGGCTCGAGAGCCGACAACAACTCGAACCTAGAGTCGGGCTTGTTGGAAAGCCGTTGC TCGGTTGGAAAGTCTGCTGCCGCCGCGTTCGATCACCAGTGTGGCGGTGGCGACTTTCCCGAATCGAAGCCAGGC CGGGAAGAAAAGGAGGTGGTGGGTAGCGATGAGTCGATGGAAAAACCCAGCGTCGAAGAGAAGCAAATGATCAGA GAAGAAGTGGGCGACGAACAAGTTATCAGACTAAGGCCGATAGAGAGGGTTGGGGAAGCATCGTATGGTACGAAG AAAACTCCCGTTTCCCCCCCCCTTGGAACCCCTTTC |
| Transcript | >Ophio5|3873 ATGTGGAAACCGAAGCTTGACTTTATCTTCTTTCACTATGCCTGGATCCTTTTCTGTGCCCTCCTTGCTCTTCCC ATCCTCTCTCCTTACGGAAACCTGGATTTCATAGACGTCGTGTTTTTCGGCGCCAGTGCAGCAACGGACTCTGGA CTCAACACGGTCGATTGTAATAAACTGGCGCTCTATCAACAGCTGTACATTTACTTGATCCCCATGGTGACCAAT GCCGGTTTCATAAACTGTTTCCTTATCTTGTTACGCCTGCGCTGGTTTCGGAAACGCATAGACAAGCGCCGACGT ATCACGCAAGGCCATCATGGCTCGAGAGCCGACAACAACTCGAACCTAGAGTCGGGCTTGTTGGAAAGCCGTTGC TCGGTTGGAAAGTCTGCTGCCGCCGCGTTCGATCACCAGTGTGGCGGTGGCGACTTTCCCGAATCGAAGCCAGGC CGGGAAGAAAAGGAGGTGGTGGGTAGCGATGAGTCGATGGAAAAACCCAGCGTCGAAGAGAAGCAAATGATCAGA GAAGAAGTGGGCGACGAACAAGTTATCAGACTAAGGCCGATAGAGAGGGTTGGGGAAGCATCGTATGGTACGAAG AAAACTCCCGTTTCCCCCCCCCTTGGAACCCCTTTCTGA |
| Gene | >Ophio5|3873 ATGTGGAAACCGAAGCTTGACTTTATCTTCTTTCACTGTAGGTCTGTTGGATGACGAGTTCCGATTTCGTCTGAG TTGCTAAACCGTCTTTAGATGCCTGGATCCTTTTCTGTGCCCTCCTTGCTCTTCCCATCCTCTCTCCTTACGGAA ACCTGGATTTCATAGACGTCGTGTTTTTCGGCGCCAGTGCAGCAACGGACTCTGGACTCAACACGGTCGATTGTA ATAAACTGGCGCTCTATCAACAGCTGTACATTTACTTGATCCCCATGGTGACCAATGCCGGTTTCATAAACTGTT TCCTTATCTTGTTACGCCTGCGCTGGTTTCGGAAACGCATAGACAAGCGCCGACGTATCACGCAAGGCCATCATG GCTCGAGAGCCGACAACAACTCGAACCTAGAGTCGGGCTTGTTGGAAAGCCGTTGCTCGGTTGGAAAGTCTGCTG CCGCCGCGTTCGATCACCAGTGTGGCGGTGGCGACTTTCCCGAATCGAAGCCAGGCCGGGAAGAAAAGGAGGTGG TGGGTAGCGATGAGTCGATGGAAAAACCCAGCGTCGAAGAGAAGCAAATGATCAGAGAAGAAGTGGGCGACGAAC AAGTTATCAGACTAAGGCCGATAGAGAGGGTTGGGGAAGCATCGTATGGTACGAAGAAAACTCCCGTTTCCCCCC CCCTTGGAACCCCTTTCTGA |