Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|385
Gene name
Locationscaffold_109:35076..37446
Strand+
Gene length (bp)2370
Transcript length (bp)1875
Coding sequence length (bp)1872
Protein length (aa) 624

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09779 Ima1_N Ima1 N-terminal domain 7.0E-34 10 133

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13681|IINMP_SCHPO Integral inner nuclear membrane protein ima1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=IMA1 PE=4 SV=2 8 288 2.0E-24

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 269 291 22
2 298 315 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 25.61 13.22 37.99
CcL In ants, during behavior modification 23.86 12.03 35.70
CcD In ants, recently dead 25.96 13.43 38.50

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.807815 no
SC16a CcD 0.963818 no
CcL CcD 0.763614 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|385
MARFRAARHLNCFYCGRRSGIRNDGKTLEFVCRYCEATNYLDEKGEITDPPVATDGEATMTQFAAPKPPSQTDSI
FCSACLKNQYLLTASLAQYLPDDPSDPDYAPLERNYHRYRRGLEKRYPQVCDQCAGRVEARLRQAGYTAKTDHLR
RMMELGRGKRTASKNGLLDWVSCLGGVIWRAGFALQLLWHLVAVAPLLRDGGDGLRDPNEAGLSVTATAWLGSVA
DVLPGPDVLVRWTVAAAVASVWWNPYFVQLFRGFTRHLTGFKQWYSFQSLIVVFRLVCWGLVGVGAQSRQAQLSL
HMAMASVMTLIYVFSRKSMRVDTSPLFGAGSSSGLKEAAMTPTRAPAAPNKHLTQPAACTEASLQQLPSRLSRNP
RPSAAAAGPPSPNKGMGIDKSPFWYKVPAAPVTPARQLRNPPRAPDVKPAMLETDRFAFSPATTREKGRGQSTAG
VEFRQPQFFAPERDDANSLADLLGQSFSLSQDRDQEGDDDDDDDDNNDDDDDGKVTTLGGQGKSRRTATSSARRL
SHGGASTWHRRLVEPVALIVLPIMWALTLTSAVPFRNECQAAIIAMSGLMTFLGAGEERHGSRSEQVLAAWATAE
LAASFWVFYALSTDGEAPCRRRPS
Coding >Ophio5|385
ATGGCGCGCTTCCGGGCAGCGAGGCACCTGAATTGCTTCTACTGCGGGCGACGATCTGGAATACGGAACGATGGC
AAGACGCTCGAGTTTGTGTGTCGCTACTGCGAGGCGACCAACTATCTCGACGAGAAGGGCGAAATCACCGACCCC
CCCGTCGCTACAGATGGTGAAGCTACGATGACGCAGTTCGCAGCACCGAAACCACCTTCTCAGACAGACAGCATA
TTCTGCTCAGCCTGCCTCAAGAACCAATACCTGCTGACGGCTTCGTTGGCGCAATACCTCCCCGACGATCCTTCT
GACCCGGACTACGCGCCGCTGGAGCGCAACTACCACCGATATCGCCGCGGCCTGGAGAAGCGCTACCCACAGGTG
TGTGACCAATGCGCCGGCCGGGTCGAGGCGCGACTGCGGCAGGCGGGCTATACGGCCAAGACGGATCATCTGCGG
CGAATGATGGAGTTGGGCCGTGGTAAGAGGACGGCTTCGAAGAATGGGCTTCTGGATTGGGTTTCCTGTCTGGGA
GGTGTCATCTGGAGGGCGGGGTTTGCCTTACAGCTGCTGTGGCATCTTGTTGCCGTCGCTCCGCTTCTAAGAGAC
GGAGGCGACGGCTTGCGAGATCCGAACGAGGCAGGCCTTTCGGTTACAGCGACGGCCTGGCTTGGAAGCGTGGCG
GATGTGCTTCCTGGGCCGGATGTGCTCGTTCGCTGGACCGTGGCGGCAGCTGTTGCGTCGGTATGGTGGAATCCT
TACTTTGTCCAGCTATTTCGGGGCTTCACGAGGCATTTGACTGGCTTCAAGCAGTGGTATTCCTTCCAGAGCCTG
ATCGTCGTCTTCCGCCTTGTCTGCTGGGGCCTTGTCGGCGTCGGGGCTCAGTCACGTCAGGCACAGCTGAGCCTT
CATATGGCCATGGCGTCTGTCATGACACTGATATACGTCTTTTCGCGCAAGTCGATGCGCGTCGACACGTCGCCC
CTATTTGGCGCCGGCTCCAGTTCCGGGCTCAAAGAAGCGGCCATGACTCCGACAAGGGCACCGGCGGCCCCCAAC
AAGCATCTCACCCAGCCCGCTGCCTGCACAGAGGCAAGCCTACAACAACTCCCTAGCCGTCTATCGCGAAACCCC
CGGCCTTCTGCCGCAGCAGCAGGCCCACCGTCTCCGAACAAGGGCATGGGCATAGACAAGAGCCCCTTTTGGTAC
AAGGTCCCCGCAGCGCCGGTGACGCCCGCGCGACAGCTAAGGAATCCTCCGAGGGCGCCGGATGTGAAGCCGGCC
ATGTTGGAGACGGATAGATTCGCCTTTTCGCCGGCGACGACGCGCGAAAAGGGGCGCGGTCAGAGCACCGCTGGG
GTGGAGTTCCGGCAGCCGCAGTTTTTCGCGCCGGAGCGGGACGACGCCAACTCGTTGGCTGATCTCCTGGGCCAG
AGCTTTAGTCTGAGCCAGGACCGTGACCAGGAGGGCGATGACGATGACGATGACGACGATAATAATGATGATGAT
GATGATGGAAAGGTTACGACACTCGGCGGTCAAGGGAAGAGTCGGAGGACGGCCACGTCGTCGGCCAGGAGGCTA
TCTCACGGAGGGGCAAGCACATGGCATCGCCGCCTCGTCGAACCCGTCGCGCTCATCGTTCTACCTATCATGTGG
GCGCTGACACTGACCTCTGCCGTGCCCTTCCGAAACGAGTGCCAGGCGGCGATCATAGCCATGTCCGGACTCATG
ACCTTTCTCGGCGCCGGCGAGGAGCGGCACGGCTCCAGGTCCGAGCAGGTCCTGGCAGCATGGGCGACTGCAGAG
CTGGCGGCCTCTTTTTGGGTCTTCTATGCGCTGTCGACGGATGGAGAGGCGCCGTGCCGTCGACGGCCGTCA
Transcript >Ophio5|385
ATGGCGCGCTTCCGGGCAGCGAGGCACCTGAATTGCTTCTACTGCGGGCGACGATCTGGAATACGGAACGATGGC
AAGACGCTCGAGTTTGTGTGTCGCTACTGCGAGGCGACCAACTATCTCGACGAGAAGGGCGAAATCACCGACCCC
CCCGTCGCTACAGATGGTGAAGCTACGATGACGCAGTTCGCAGCACCGAAACCACCTTCTCAGACAGACAGCATA
TTCTGCTCAGCCTGCCTCAAGAACCAATACCTGCTGACGGCTTCGTTGGCGCAATACCTCCCCGACGATCCTTCT
GACCCGGACTACGCGCCGCTGGAGCGCAACTACCACCGATATCGCCGCGGCCTGGAGAAGCGCTACCCACAGGTG
TGTGACCAATGCGCCGGCCGGGTCGAGGCGCGACTGCGGCAGGCGGGCTATACGGCCAAGACGGATCATCTGCGG
CGAATGATGGAGTTGGGCCGTGGTAAGAGGACGGCTTCGAAGAATGGGCTTCTGGATTGGGTTTCCTGTCTGGGA
GGTGTCATCTGGAGGGCGGGGTTTGCCTTACAGCTGCTGTGGCATCTTGTTGCCGTCGCTCCGCTTCTAAGAGAC
GGAGGCGACGGCTTGCGAGATCCGAACGAGGCAGGCCTTTCGGTTACAGCGACGGCCTGGCTTGGAAGCGTGGCG
GATGTGCTTCCTGGGCCGGATGTGCTCGTTCGCTGGACCGTGGCGGCAGCTGTTGCGTCGGTATGGTGGAATCCT
TACTTTGTCCAGCTATTTCGGGGCTTCACGAGGCATTTGACTGGCTTCAAGCAGTGGTATTCCTTCCAGAGCCTG
ATCGTCGTCTTCCGCCTTGTCTGCTGGGGCCTTGTCGGCGTCGGGGCTCAGTCACGTCAGGCACAGCTGAGCCTT
CATATGGCCATGGCGTCTGTCATGACACTGATATACGTCTTTTCGCGCAAGTCGATGCGCGTCGACACGTCGCCC
CTATTTGGCGCCGGCTCCAGTTCCGGGCTCAAAGAAGCGGCCATGACTCCGACAAGGGCACCGGCGGCCCCCAAC
AAGCATCTCACCCAGCCCGCTGCCTGCACAGAGGCAAGCCTACAACAACTCCCTAGCCGTCTATCGCGAAACCCC
CGGCCTTCTGCCGCAGCAGCAGGCCCACCGTCTCCGAACAAGGGCATGGGCATAGACAAGAGCCCCTTTTGGTAC
AAGGTCCCCGCAGCGCCGGTGACGCCCGCGCGACAGCTAAGGAATCCTCCGAGGGCGCCGGATGTGAAGCCGGCC
ATGTTGGAGACGGATAGATTCGCCTTTTCGCCGGCGACGACGCGCGAAAAGGGGCGCGGTCAGAGCACCGCTGGG
GTGGAGTTCCGGCAGCCGCAGTTTTTCGCGCCGGAGCGGGACGACGCCAACTCGTTGGCTGATCTCCTGGGCCAG
AGCTTTAGTCTGAGCCAGGACCGTGACCAGGAGGGCGATGACGATGACGATGACGACGATAATAATGATGATGAT
GATGATGGAAAGGTTACGACACTCGGCGGTCAAGGGAAGAGTCGGAGGACGGCCACGTCGTCGGCCAGGAGGCTA
TCTCACGGAGGGGCAAGCACATGGCATCGCCGCCTCGTCGAACCCGTCGCGCTCATCGTTCTACCTATCATGTGG
GCGCTGACACTGACCTCTGCCGTGCCCTTCCGAAACGAGTGCCAGGCGGCGATCATAGCCATGTCCGGACTCATG
ACCTTTCTCGGCGCCGGCGAGGAGCGGCACGGCTCCAGGTCCGAGCAGGTCCTGGCAGCATGGGCGACTGCAGAG
CTGGCGGCCTCTTTTTGGGTCTTCTATGCGCTGTCGACGGATGGAGAGGCGCCGTGCCGTCGACGGCCGTCATGA
Gene >Ophio5|385
ATGGCGCGCTTCCGGGCAGCGAGGCACCTGAATTGCTTCTACTGCGGGCGACGATCTGGAATACGGAACGATGGC
AAGACGCTCGAGTTTGTGTGTCGCTACTGCGAGGCGACCAACTATCTCGACGAGGTGCCCCTCCCTCTCTCTCTC
CCTCTCTTCCTCCTTTCCTTGACGATGCCATCAAGAGACTGACTGGCTGACGACAACGCGAGTAGAAGGGCGAAA
TCACCGACCCCCCCGTCGCTACAGATGGTGAAGCTACGATGACGCAGTTCGCAGCACCGAAACCACCTTCTCAGA
CAGACAGCATATTCTGCTCAGCCTGCCTCAAGAACCAATACCTGCTGACGGCTTCGTTGGCGCAATACCTCCCCG
ACGATCCTTCTGACCCGGACTACGCGCCGCTGGAGCGCAACTACCACCGATATCGCCGCGGCCTGGAGAAGCGCT
ACCCACAGGTGTGTGACCAATGCGCCGGCCGGGTCGAGGCGCGACTGCGGCAGGCGGGCTATACGGCCAAGACGG
ATCATCTGCGGCGAATGATGGAGTTGGGCCGTGGTAAGAGGACGGCTTCGAAGAATGGGCTTCTGGATTGGGTTT
CCTGTCTGGGAGGTGTCATCTGGAGGGCGGGGTTTGCCTTACAGCTGCTGTGGCATCTTGTTGCCGTCGCTCCGC
TTCTAAGAGACGGAGGCGACGGCTTGCGAGATCCGAACGAGGCAGGCCTTTCGGTTACAGCGACGGCCTGGCTTG
GAAGCGTGGCGGATGTGCTTCCTGGGCCGGATGTGCTCGTTCGCTGGACCGTGGCGGCAGCTGTTGCGTCGGTAT
GGTGGAATCCTTACTTTGTCCAGCTATTTCGGGGCTTCACGAGGCATTTGACTGGCTTCAAGCAGTGGTATTCCT
TCCAGAGCCTGATCGTCGTCTTCCGCCTTGTCTGCTGGGGCCTTGTCGGCGTCGGGGCTCAGTCACGTCAGGCAC
AGCTGAGCCTTCATATGGCCATGGCGTCTGTCATGACACTGGTAAGAAGGGAGATAGCTCCACCAATTGTCTTTG
AACCCGAACTGACAGCCTCGCAGATATACGTCTTTTCGCGCAAGTCGATGCGCGTCGACACGTCGCCCCTATTTG
GCGCCGGCTCCAGTTCCGGGCTCAAAGAAGCGGCCATGACTCCGGTCAGAAGCAAGGACGAAACTACCAAGACGT
TGTCCGACATGCTGACCGATGCCCTCGAGTCGACGCCACAAAGACAAGGGCACCGGCGGCCCCCAACAAGCATCT
CACCCAGCCCGCTGCCTGCACAGAGGCAAGCCTACAACAACTCCCTAGCCGTCTATCGCGAAACCCCCGGCCTTC
TGCCGCAGCAGCAGGCCCAGTACGCCGAGGAGATGGACTGGTCGCCCGTTACACCAGGGCATCGTGCCTTGGCCC
CCCAGCCGTCTCCGAACAAGGGCATGGGCATAGACAAGAGCCCCTTTTGGTACAAGGTCCCCGCAGCGCCGGTGA
CGCCCGCGCGACAGCTAAGGAATCCTCCGAGGGCGCCGGATGTGAAGCCGGCCATGTTGGAGACGGATAGATTCG
CCTTTTCGCCGGCGACGACGCGCGAAAAGGGGCGCGGTCAGAGCACCGCTGGGGTGGAGTTCCGGCAGCCGCAGT
TTTTCGCGCCGGAGCGGGACGACGCCAACTCGTTGGCTGATCTCCTGGGCCAGAGCTTTAGTCTGAGCCAGGACC
GTGACCAGGAGGGCGATGACGATGACGATGACGACGATAATAATGATGATGATGATGATGGAAAGGTTACGACAC
TCGGCGGTCAAGGGAAGAGTCGGAGGACGGCCACGTCGTCGGCCAGGAGGCTATCTCACGGAGGGGCAAGCACAT
GGCATCGCCGCCTCGTCGAACCCGTCGCGCTCATCGTTCTACCTATCATGTGGGCGCTGACACTGACCTCTGCCG
TGCCCTTCCGAAACGAGTGCCAGGCGGCGATCATAGCCATGTCCGGACTCATGACCTTTCTCGGCGCCGGCGAGG
AGCGGCACGGCTCCAGGTCCGAGCAGGTCCTGGCAGCATGGGCGACTGCAGAGCTGGCGGCCTCTTTTTGGGTCT
TCTATGCGCTGTCGACGGATGGAGAGGCGCCGTGGTACGGCTCGGGCGTTCTGGCTTCGACGGCGGCGCGTTTGG
CGCTGAGACGGCTCGGCATGGAACGCTGGCTTTGAGCGGCGAGGGATCCCTTTTTTCAGCCAGTTGCAGCGGACT
CTCATGAATACGAGCCCTGCTGGATGAGTTGTGAGCCGTCGAGTGAGTTGTCATTGCAGCCTTTCTACTTGATAA
GATGTGGATGGATTTAATGAATGTCTTCGTTAGCGGCCGTCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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