Protein ID | Ophio5|385 |
Gene name | |
Location | scaffold_109:35076..37446 |
Strand | + |
Gene length (bp) | 2370 |
Transcript length (bp) | 1875 |
Coding sequence length (bp) | 1872 |
Protein length (aa) | 624 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09779 | Ima1_N | Ima1 N-terminal domain | 7.0E-34 | 10 | 133 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O13681|IINMP_SCHPO | Integral inner nuclear membrane protein ima1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=IMA1 PE=4 SV=2 | 8 | 288 | 2.0E-24 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 269 | 291 | 22 |
2 | 298 | 315 | 17 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 25.61 | 13.22 | 37.99 |
CcL | In ants, during behavior modification | 23.86 | 12.03 | 35.70 |
CcD | In ants, recently dead | 25.96 | 13.43 | 38.50 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.807815 | no |
SC16a | CcD | 0.963818 | no |
CcL | CcD | 0.763614 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|385 MARFRAARHLNCFYCGRRSGIRNDGKTLEFVCRYCEATNYLDEKGEITDPPVATDGEATMTQFAAPKPPSQTDSI FCSACLKNQYLLTASLAQYLPDDPSDPDYAPLERNYHRYRRGLEKRYPQVCDQCAGRVEARLRQAGYTAKTDHLR RMMELGRGKRTASKNGLLDWVSCLGGVIWRAGFALQLLWHLVAVAPLLRDGGDGLRDPNEAGLSVTATAWLGSVA DVLPGPDVLVRWTVAAAVASVWWNPYFVQLFRGFTRHLTGFKQWYSFQSLIVVFRLVCWGLVGVGAQSRQAQLSL HMAMASVMTLIYVFSRKSMRVDTSPLFGAGSSSGLKEAAMTPTRAPAAPNKHLTQPAACTEASLQQLPSRLSRNP RPSAAAAGPPSPNKGMGIDKSPFWYKVPAAPVTPARQLRNPPRAPDVKPAMLETDRFAFSPATTREKGRGQSTAG VEFRQPQFFAPERDDANSLADLLGQSFSLSQDRDQEGDDDDDDDDNNDDDDDGKVTTLGGQGKSRRTATSSARRL SHGGASTWHRRLVEPVALIVLPIMWALTLTSAVPFRNECQAAIIAMSGLMTFLGAGEERHGSRSEQVLAAWATAE LAASFWVFYALSTDGEAPCRRRPS |
Coding | >Ophio5|385 ATGGCGCGCTTCCGGGCAGCGAGGCACCTGAATTGCTTCTACTGCGGGCGACGATCTGGAATACGGAACGATGGC AAGACGCTCGAGTTTGTGTGTCGCTACTGCGAGGCGACCAACTATCTCGACGAGAAGGGCGAAATCACCGACCCC CCCGTCGCTACAGATGGTGAAGCTACGATGACGCAGTTCGCAGCACCGAAACCACCTTCTCAGACAGACAGCATA TTCTGCTCAGCCTGCCTCAAGAACCAATACCTGCTGACGGCTTCGTTGGCGCAATACCTCCCCGACGATCCTTCT GACCCGGACTACGCGCCGCTGGAGCGCAACTACCACCGATATCGCCGCGGCCTGGAGAAGCGCTACCCACAGGTG TGTGACCAATGCGCCGGCCGGGTCGAGGCGCGACTGCGGCAGGCGGGCTATACGGCCAAGACGGATCATCTGCGG CGAATGATGGAGTTGGGCCGTGGTAAGAGGACGGCTTCGAAGAATGGGCTTCTGGATTGGGTTTCCTGTCTGGGA GGTGTCATCTGGAGGGCGGGGTTTGCCTTACAGCTGCTGTGGCATCTTGTTGCCGTCGCTCCGCTTCTAAGAGAC GGAGGCGACGGCTTGCGAGATCCGAACGAGGCAGGCCTTTCGGTTACAGCGACGGCCTGGCTTGGAAGCGTGGCG GATGTGCTTCCTGGGCCGGATGTGCTCGTTCGCTGGACCGTGGCGGCAGCTGTTGCGTCGGTATGGTGGAATCCT TACTTTGTCCAGCTATTTCGGGGCTTCACGAGGCATTTGACTGGCTTCAAGCAGTGGTATTCCTTCCAGAGCCTG ATCGTCGTCTTCCGCCTTGTCTGCTGGGGCCTTGTCGGCGTCGGGGCTCAGTCACGTCAGGCACAGCTGAGCCTT CATATGGCCATGGCGTCTGTCATGACACTGATATACGTCTTTTCGCGCAAGTCGATGCGCGTCGACACGTCGCCC CTATTTGGCGCCGGCTCCAGTTCCGGGCTCAAAGAAGCGGCCATGACTCCGACAAGGGCACCGGCGGCCCCCAAC AAGCATCTCACCCAGCCCGCTGCCTGCACAGAGGCAAGCCTACAACAACTCCCTAGCCGTCTATCGCGAAACCCC CGGCCTTCTGCCGCAGCAGCAGGCCCACCGTCTCCGAACAAGGGCATGGGCATAGACAAGAGCCCCTTTTGGTAC AAGGTCCCCGCAGCGCCGGTGACGCCCGCGCGACAGCTAAGGAATCCTCCGAGGGCGCCGGATGTGAAGCCGGCC ATGTTGGAGACGGATAGATTCGCCTTTTCGCCGGCGACGACGCGCGAAAAGGGGCGCGGTCAGAGCACCGCTGGG GTGGAGTTCCGGCAGCCGCAGTTTTTCGCGCCGGAGCGGGACGACGCCAACTCGTTGGCTGATCTCCTGGGCCAG AGCTTTAGTCTGAGCCAGGACCGTGACCAGGAGGGCGATGACGATGACGATGACGACGATAATAATGATGATGAT GATGATGGAAAGGTTACGACACTCGGCGGTCAAGGGAAGAGTCGGAGGACGGCCACGTCGTCGGCCAGGAGGCTA TCTCACGGAGGGGCAAGCACATGGCATCGCCGCCTCGTCGAACCCGTCGCGCTCATCGTTCTACCTATCATGTGG GCGCTGACACTGACCTCTGCCGTGCCCTTCCGAAACGAGTGCCAGGCGGCGATCATAGCCATGTCCGGACTCATG ACCTTTCTCGGCGCCGGCGAGGAGCGGCACGGCTCCAGGTCCGAGCAGGTCCTGGCAGCATGGGCGACTGCAGAG CTGGCGGCCTCTTTTTGGGTCTTCTATGCGCTGTCGACGGATGGAGAGGCGCCGTGCCGTCGACGGCCGTCA |
Transcript | >Ophio5|385 ATGGCGCGCTTCCGGGCAGCGAGGCACCTGAATTGCTTCTACTGCGGGCGACGATCTGGAATACGGAACGATGGC AAGACGCTCGAGTTTGTGTGTCGCTACTGCGAGGCGACCAACTATCTCGACGAGAAGGGCGAAATCACCGACCCC CCCGTCGCTACAGATGGTGAAGCTACGATGACGCAGTTCGCAGCACCGAAACCACCTTCTCAGACAGACAGCATA TTCTGCTCAGCCTGCCTCAAGAACCAATACCTGCTGACGGCTTCGTTGGCGCAATACCTCCCCGACGATCCTTCT GACCCGGACTACGCGCCGCTGGAGCGCAACTACCACCGATATCGCCGCGGCCTGGAGAAGCGCTACCCACAGGTG TGTGACCAATGCGCCGGCCGGGTCGAGGCGCGACTGCGGCAGGCGGGCTATACGGCCAAGACGGATCATCTGCGG CGAATGATGGAGTTGGGCCGTGGTAAGAGGACGGCTTCGAAGAATGGGCTTCTGGATTGGGTTTCCTGTCTGGGA GGTGTCATCTGGAGGGCGGGGTTTGCCTTACAGCTGCTGTGGCATCTTGTTGCCGTCGCTCCGCTTCTAAGAGAC GGAGGCGACGGCTTGCGAGATCCGAACGAGGCAGGCCTTTCGGTTACAGCGACGGCCTGGCTTGGAAGCGTGGCG GATGTGCTTCCTGGGCCGGATGTGCTCGTTCGCTGGACCGTGGCGGCAGCTGTTGCGTCGGTATGGTGGAATCCT TACTTTGTCCAGCTATTTCGGGGCTTCACGAGGCATTTGACTGGCTTCAAGCAGTGGTATTCCTTCCAGAGCCTG ATCGTCGTCTTCCGCCTTGTCTGCTGGGGCCTTGTCGGCGTCGGGGCTCAGTCACGTCAGGCACAGCTGAGCCTT CATATGGCCATGGCGTCTGTCATGACACTGATATACGTCTTTTCGCGCAAGTCGATGCGCGTCGACACGTCGCCC CTATTTGGCGCCGGCTCCAGTTCCGGGCTCAAAGAAGCGGCCATGACTCCGACAAGGGCACCGGCGGCCCCCAAC AAGCATCTCACCCAGCCCGCTGCCTGCACAGAGGCAAGCCTACAACAACTCCCTAGCCGTCTATCGCGAAACCCC CGGCCTTCTGCCGCAGCAGCAGGCCCACCGTCTCCGAACAAGGGCATGGGCATAGACAAGAGCCCCTTTTGGTAC AAGGTCCCCGCAGCGCCGGTGACGCCCGCGCGACAGCTAAGGAATCCTCCGAGGGCGCCGGATGTGAAGCCGGCC ATGTTGGAGACGGATAGATTCGCCTTTTCGCCGGCGACGACGCGCGAAAAGGGGCGCGGTCAGAGCACCGCTGGG GTGGAGTTCCGGCAGCCGCAGTTTTTCGCGCCGGAGCGGGACGACGCCAACTCGTTGGCTGATCTCCTGGGCCAG AGCTTTAGTCTGAGCCAGGACCGTGACCAGGAGGGCGATGACGATGACGATGACGACGATAATAATGATGATGAT GATGATGGAAAGGTTACGACACTCGGCGGTCAAGGGAAGAGTCGGAGGACGGCCACGTCGTCGGCCAGGAGGCTA TCTCACGGAGGGGCAAGCACATGGCATCGCCGCCTCGTCGAACCCGTCGCGCTCATCGTTCTACCTATCATGTGG GCGCTGACACTGACCTCTGCCGTGCCCTTCCGAAACGAGTGCCAGGCGGCGATCATAGCCATGTCCGGACTCATG ACCTTTCTCGGCGCCGGCGAGGAGCGGCACGGCTCCAGGTCCGAGCAGGTCCTGGCAGCATGGGCGACTGCAGAG CTGGCGGCCTCTTTTTGGGTCTTCTATGCGCTGTCGACGGATGGAGAGGCGCCGTGCCGTCGACGGCCGTCATGA |
Gene | >Ophio5|385 ATGGCGCGCTTCCGGGCAGCGAGGCACCTGAATTGCTTCTACTGCGGGCGACGATCTGGAATACGGAACGATGGC AAGACGCTCGAGTTTGTGTGTCGCTACTGCGAGGCGACCAACTATCTCGACGAGGTGCCCCTCCCTCTCTCTCTC CCTCTCTTCCTCCTTTCCTTGACGATGCCATCAAGAGACTGACTGGCTGACGACAACGCGAGTAGAAGGGCGAAA TCACCGACCCCCCCGTCGCTACAGATGGTGAAGCTACGATGACGCAGTTCGCAGCACCGAAACCACCTTCTCAGA CAGACAGCATATTCTGCTCAGCCTGCCTCAAGAACCAATACCTGCTGACGGCTTCGTTGGCGCAATACCTCCCCG ACGATCCTTCTGACCCGGACTACGCGCCGCTGGAGCGCAACTACCACCGATATCGCCGCGGCCTGGAGAAGCGCT ACCCACAGGTGTGTGACCAATGCGCCGGCCGGGTCGAGGCGCGACTGCGGCAGGCGGGCTATACGGCCAAGACGG ATCATCTGCGGCGAATGATGGAGTTGGGCCGTGGTAAGAGGACGGCTTCGAAGAATGGGCTTCTGGATTGGGTTT CCTGTCTGGGAGGTGTCATCTGGAGGGCGGGGTTTGCCTTACAGCTGCTGTGGCATCTTGTTGCCGTCGCTCCGC TTCTAAGAGACGGAGGCGACGGCTTGCGAGATCCGAACGAGGCAGGCCTTTCGGTTACAGCGACGGCCTGGCTTG GAAGCGTGGCGGATGTGCTTCCTGGGCCGGATGTGCTCGTTCGCTGGACCGTGGCGGCAGCTGTTGCGTCGGTAT GGTGGAATCCTTACTTTGTCCAGCTATTTCGGGGCTTCACGAGGCATTTGACTGGCTTCAAGCAGTGGTATTCCT TCCAGAGCCTGATCGTCGTCTTCCGCCTTGTCTGCTGGGGCCTTGTCGGCGTCGGGGCTCAGTCACGTCAGGCAC AGCTGAGCCTTCATATGGCCATGGCGTCTGTCATGACACTGGTAAGAAGGGAGATAGCTCCACCAATTGTCTTTG AACCCGAACTGACAGCCTCGCAGATATACGTCTTTTCGCGCAAGTCGATGCGCGTCGACACGTCGCCCCTATTTG GCGCCGGCTCCAGTTCCGGGCTCAAAGAAGCGGCCATGACTCCGGTCAGAAGCAAGGACGAAACTACCAAGACGT TGTCCGACATGCTGACCGATGCCCTCGAGTCGACGCCACAAAGACAAGGGCACCGGCGGCCCCCAACAAGCATCT CACCCAGCCCGCTGCCTGCACAGAGGCAAGCCTACAACAACTCCCTAGCCGTCTATCGCGAAACCCCCGGCCTTC TGCCGCAGCAGCAGGCCCAGTACGCCGAGGAGATGGACTGGTCGCCCGTTACACCAGGGCATCGTGCCTTGGCCC CCCAGCCGTCTCCGAACAAGGGCATGGGCATAGACAAGAGCCCCTTTTGGTACAAGGTCCCCGCAGCGCCGGTGA CGCCCGCGCGACAGCTAAGGAATCCTCCGAGGGCGCCGGATGTGAAGCCGGCCATGTTGGAGACGGATAGATTCG CCTTTTCGCCGGCGACGACGCGCGAAAAGGGGCGCGGTCAGAGCACCGCTGGGGTGGAGTTCCGGCAGCCGCAGT TTTTCGCGCCGGAGCGGGACGACGCCAACTCGTTGGCTGATCTCCTGGGCCAGAGCTTTAGTCTGAGCCAGGACC GTGACCAGGAGGGCGATGACGATGACGATGACGACGATAATAATGATGATGATGATGATGGAAAGGTTACGACAC TCGGCGGTCAAGGGAAGAGTCGGAGGACGGCCACGTCGTCGGCCAGGAGGCTATCTCACGGAGGGGCAAGCACAT GGCATCGCCGCCTCGTCGAACCCGTCGCGCTCATCGTTCTACCTATCATGTGGGCGCTGACACTGACCTCTGCCG TGCCCTTCCGAAACGAGTGCCAGGCGGCGATCATAGCCATGTCCGGACTCATGACCTTTCTCGGCGCCGGCGAGG AGCGGCACGGCTCCAGGTCCGAGCAGGTCCTGGCAGCATGGGCGACTGCAGAGCTGGCGGCCTCTTTTTGGGTCT TCTATGCGCTGTCGACGGATGGAGAGGCGCCGTGGTACGGCTCGGGCGTTCTGGCTTCGACGGCGGCGCGTTTGG CGCTGAGACGGCTCGGCATGGAACGCTGGCTTTGAGCGGCGAGGGATCCCTTTTTTCAGCCAGTTGCAGCGGACT CTCATGAATACGAGCCCTGCTGGATGAGTTGTGAGCCGTCGAGTGAGTTGTCATTGCAGCCTTTCTACTTGATAA GATGTGGATGGATTTAATGAATGTCTTCGTTAGCGGCCGTCATGA |