Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3844
Gene name
Location	scaffold_30:22021..23886
Strand	+
Gene length (bp)	1865
Transcript length (bp)	1746
Coding sequence length (bp)	1743
Protein length (aa)	581

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01564	Spermine_synth	Spermine/spermidine synthase domain	1.8E-07	339	445

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8D3Q3\|SPEE_VIBVU	Polyamine aminopropyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=speE PE=3 SV=1	332	446	4.0E-09
sp\|Q7MF74\|SPEE_VIBVY	Polyamine aminopropyltransferase OS=Vibrio vulnificus (strain YJ016) GN=speE PE=3 SV=1	332	446	5.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 49	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	48	70	22
2	85	107	22
3	112	134	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	74.42	40.55	108.30
CcL	In ants, during behavior modification	74.58	38.95	110.21
CcD	In ants, recently dead	34.10	18.04	50.15

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.993224	no
SC16a	CcD	0.000535	yes
CcL	CcD	0.000770	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3844 MPGKKKTGVTAAPAEGFTPERFEAELKDLAAKARDDSSGRHVFEQLSLYAKAVSLLALLGIYSTVSPLTLSPVYG SLPSSLWHSQLLMTGCFIGWAGNVAFRNLLLVKTIHLLPLVALYIPTAQWFLLGYSSLLGPRWGPVVTEGLTFVP LAALTAAAVADLFEDARLSLLPGFVAEAAPGIGSWAWLKFVELLASRHLPPNMGRSIGLTRLGLELTLGALYSLF ARSKLLLYVLPPLLHTLVVNTHFASPHATSSLVSSLLSDNWLLLERRESMTGYVSVLQSMEEGFRAMRCDHSLLG GDWINERGRALSEPIYGVFVMLEAVRLAERDSPPPDEEARALVVGLGVGTTPSALVTHGINTTVVEIDPVVYEFA VKYFDLKENSPPVLEDAVSYTSALAASAPQSYDYIIHDVFTGGAEPVQLFTFEFIEGLEKLLKPNGIIAVNYAGD LALPAPTVIFRTIKRVFPTCRVFREVPPDAKAIELDGADFANMVIFCTKSNAPLTFRRPTQADHLESATRKQFLN LDHEMLESEFLSRDEDETTILRRNDTSAVEKWHEQGALGHWAIMRRMLPASVWERW
Coding	>Ophio5\|3844 ATGCCGGGAAAAAAAAAGACTGGCGTGACAGCGGCGCCGGCCGAGGGCTTCACGCCCGAACGCTTCGAGGCCGAG TTGAAGGACCTCGCGGCCAAGGCAAGGGACGATTCTTCGGGCAGGCATGTTTTCGAGCAGCTGTCCCTGTACGCC AAGGCCGTCTCTCTGCTGGCCCTCCTCGGCATCTACTCCACCGTCTCGCCGCTCACCTTGTCGCCCGTCTACGGG TCCCTGCCATCCTCGCTATGGCACTCCCAGCTCCTCATGACCGGCTGCTTCATCGGATGGGCGGGAAACGTGGCC TTCAGAAACTTGCTCCTCGTCAAGACGATCCACCTGCTCCCGCTCGTCGCCCTGTATATACCGACAGCACAATGG TTCCTTCTCGGCTATAGCAGCCTGCTCGGCCCCCGGTGGGGTCCCGTCGTCACCGAGGGCCTTACCTTCGTCCCC CTCGCTGCCTTGACTGCCGCTGCCGTCGCCGACCTTTTCGAGGATGCGCGGCTGTCTCTGCTTCCGGGCTTCGTC GCCGAGGCCGCACCGGGGATCGGTTCTTGGGCCTGGCTCAAGTTCGTTGAGCTGCTGGCTAGCCGCCATCTGCCG CCCAACATGGGGCGCTCCATTGGTCTCACCCGCCTCGGCCTAGAACTGACGCTGGGTGCCTTGTACTCCCTGTTC GCTCGTTCCAAGCTTCTTCTTTACGTGCTGCCGCCACTCCTGCATACCTTGGTCGTCAACACGCACTTCGCCTCG CCCCACGCCACCTCCTCGCTCGTCAGCTCCCTACTGTCAGACAATTGGTTGCTGCTGGAGCGTCGAGAGTCGATG ACGGGGTACGTTTCCGTCTTGCAGAGCATGGAGGAAGGCTTTCGCGCCATGCGCTGTGACCACAGTCTCCTGGGT GGCGACTGGATTAACGAGCGCGGCCGCGCGCTGTCGGAGCCCATCTACGGCGTCTTCGTCATGCTCGAGGCTGTG CGATTGGCCGAGAGGGACAGCCCGCCGCCAGACGAGGAGGCTCGTGCCTTGGTTGTTGGGCTGGGCGTGGGAACG ACACCTTCGGCTCTCGTCACTCACGGCATCAACACGACCGTTGTTGAAATAGACCCGGTCGTGTACGAGTTTGCC GTAAAGTACTTTGACCTCAAGGAAAATAGTCCTCCCGTATTGGAGGATGCTGTGAGCTACACCTCAGCCTTGGCG GCCTCCGCGCCCCAAAGTTACGACTATATCATCCATGACGTCTTCACCGGCGGCGCGGAACCGGTGCAGCTCTTC ACTTTTGAATTTATTGAAGGCCTTGAGAAGCTGCTCAAGCCCAACGGAATCATCGCCGTCAATTACGCCGGCGAT CTTGCTCTTCCGGCCCCTACCGTCATATTCCGCACCATAAAGCGCGTCTTCCCGACATGTCGCGTCTTCCGCGAG GTGCCGCCGGATGCCAAAGCCATCGAGTTAGACGGAGCCGACTTTGCCAACATGGTCATCTTCTGCACCAAGTCA AATGCTCCGCTGACTTTCAGGAGGCCCACACAGGCAGACCATCTTGAGAGCGCGACGAGGAAACAGTTCCTCAAC CTCGACCACGAGATGCTCGAGTCCGAGTTTCTGTCCCGCGATGAAGACGAGACGACCATTTTGCGGAGAAACGAT ACCAGTGCGGTGGAGAAGTGGCACGAACAGGGCGCGCTGGGCCACTGGGCCATTATGAGGAGGATGCTCCCAGCC TCCGTATGGGAACGGTGG
Transcript	>Ophio5\|3844 ATGCCGGGAAAAAAAAAGACTGGCGTGACAGCGGCGCCGGCCGAGGGCTTCACGCCCGAACGCTTCGAGGCCGAG TTGAAGGACCTCGCGGCCAAGGCAAGGGACGATTCTTCGGGCAGGCATGTTTTCGAGCAGCTGTCCCTGTACGCC AAGGCCGTCTCTCTGCTGGCCCTCCTCGGCATCTACTCCACCGTCTCGCCGCTCACCTTGTCGCCCGTCTACGGG TCCCTGCCATCCTCGCTATGGCACTCCCAGCTCCTCATGACCGGCTGCTTCATCGGATGGGCGGGAAACGTGGCC TTCAGAAACTTGCTCCTCGTCAAGACGATCCACCTGCTCCCGCTCGTCGCCCTGTATATACCGACAGCACAATGG TTCCTTCTCGGCTATAGCAGCCTGCTCGGCCCCCGGTGGGGTCCCGTCGTCACCGAGGGCCTTACCTTCGTCCCC CTCGCTGCCTTGACTGCCGCTGCCGTCGCCGACCTTTTCGAGGATGCGCGGCTGTCTCTGCTTCCGGGCTTCGTC GCCGAGGCCGCACCGGGGATCGGTTCTTGGGCCTGGCTCAAGTTCGTTGAGCTGCTGGCTAGCCGCCATCTGCCG CCCAACATGGGGCGCTCCATTGGTCTCACCCGCCTCGGCCTAGAACTGACGCTGGGTGCCTTGTACTCCCTGTTC GCTCGTTCCAAGCTTCTTCTTTACGTGCTGCCGCCACTCCTGCATACCTTGGTCGTCAACACGCACTTCGCCTCG CCCCACGCCACCTCCTCGCTCGTCAGCTCCCTACTGTCAGACAATTGGTTGCTGCTGGAGCGTCGAGAGTCGATG ACGGGGTACGTTTCCGTCTTGCAGAGCATGGAGGAAGGCTTTCGCGCCATGCGCTGTGACCACAGTCTCCTGGGT GGCGACTGGATTAACGAGCGCGGCCGCGCGCTGTCGGAGCCCATCTACGGCGTCTTCGTCATGCTCGAGGCTGTG CGATTGGCCGAGAGGGACAGCCCGCCGCCAGACGAGGAGGCTCGTGCCTTGGTTGTTGGGCTGGGCGTGGGAACG ACACCTTCGGCTCTCGTCACTCACGGCATCAACACGACCGTTGTTGAAATAGACCCGGTCGTGTACGAGTTTGCC GTAAAGTACTTTGACCTCAAGGAAAATAGTCCTCCCGTATTGGAGGATGCTGTGAGCTACACCTCAGCCTTGGCG GCCTCCGCGCCCCAAAGTTACGACTATATCATCCATGACGTCTTCACCGGCGGCGCGGAACCGGTGCAGCTCTTC ACTTTTGAATTTATTGAAGGCCTTGAGAAGCTGCTCAAGCCCAACGGAATCATCGCCGTCAATTACGCCGGCGAT CTTGCTCTTCCGGCCCCTACCGTCATATTCCGCACCATAAAGCGCGTCTTCCCGACATGTCGCGTCTTCCGCGAG GTGCCGCCGGATGCCAAAGCCATCGAGTTAGACGGAGCCGACTTTGCCAACATGGTCATCTTCTGCACCAAGTCA AATGCTCCGCTGACTTTCAGGAGGCCCACACAGGCAGACCATCTTGAGAGCGCGACGAGGAAACAGTTCCTCAAC CTCGACCACGAGATGCTCGAGTCCGAGTTTCTGTCCCGCGATGAAGACGAGACGACCATTTTGCGGAGAAACGAT ACCAGTGCGGTGGAGAAGTGGCACGAACAGGGCGCGCTGGGCCACTGGGCCATTATGAGGAGGATGCTCCCAGCC TCCGTATGGGAACGGTGGTGA
Gene	>Ophio5\|3844 ATGCCGGGAAAAAAAAAGACTGGCGTGACAGCGGCGCCGGCCGAGGGCTTCACGCCCGAACGCTTCGAGGCCGAG TTGAAGGACCTCGCGGCCAAGGCAAGGGACGATTCTTCGGGCAGGCATGTTTTCGAGCAGCTGTCCCTGTACGCC AAGGCCGTCTCTCTGCTGGCCCTCCTCGGCATCTACTCCACCGTCTCGCCGCTCACCTTGTCGCCCGTCTACGGG TCCCTGCCATCCTCGCTATGGCACTCCCAGCTCCTCATGACCGGCTGCTTCATCGGATGGGCGGGAAACGTGGCC TTCAGAAACTTGCTCCTCGTCAAGACGATCCACCTGCTCCCGCTCGTCGCCCTGTATATACCGACAGCACAATGG TTCCTTCTCGGCTATAGCAGCCTGCTCGGCCCCCGGTGGGGTCCCGTCGTCACCGAGGGCCTTACCTTCGTCCCC CTCGCTGCCTTGACTGCCGCTGCCGTCGCCGACCTTTTCGAGGATGCGCGGCTGTCTCTGCTTCCGGGCTTCGTC GCCGAGGCCGCACCGGGGATCGGTTCTTGGGCCTGGCTCAAGTTCGTTGAGCTGCTGGCTAGCCGCCATCTGCCG CCCAACATGGGGCGCTCCATTGGTCTCACCCGCCTCGGCCTAGAACTGACGCTGGGTGCCTTGTACTCCCTGTTC GCTCGTTCCAAGCTTCTTCTTTACGTGCTGCCGCCACTCCTGCATACCTTGGTCGTCAACACGCACTTCGCCTCG CCCCACGCCACCTCCTCGCTCGTCAGCTCCCTACTGTCAGACAATTGGTTGCTGCTGGAGCGTCGAGAGTCGATG ACGGGGTACGTTTCCGTCTTGCAGAGCATGGAGGAAGGCTTTCGCGCCATGCGCTGTGACCACAGTCTCCTGGGT GGCGACTGGATTAACGAGCGCGGCCGCGCGCTGTCGGAGCCCATCTACGGCGTCTTCGTCATGCTCGAGGCTGTG CGATTGGCCGAGAGGGACAGCCCGCCGCCAGACGAGGAGGCTCGTGCCTTGGTTGTGTAAGTTGCCGGCCACAAC TCGGCCCTGTTTCTATCGGCGCTGACGAGACGCAGTGGGCTGGGCGTGGGAACGACACCTTCGGCTCTCGTCACT CACGGCATCAACACGACCGTTGTTGAAATAGACCCGGTCGTGTACGAGTTTGCCGTAAAGTACTTTGACCTCAAG GAAAATAGTCCTCCCGTATTGGAGGATGCTGTGAGCTACACCTCAGCCTTGGCGGCCTCCGCGCCCCAAAGTTAC GACTATATCATCCATGACGTCTTCACCGGCGGCGCGGAACCGGTGCAGCTCTTCACTTTTGAATTTATTGAAGGC CTTGAGAAGCTGCTCAAGCCCAACGGAATCATCGCCGTCGTGAGTGGCTACCGACAGTCAAGTTTCCGAGTGTTC AGGGGCCCGAATCTAATTTTTCTTTTCAGAATTACGCCGGCGATCTTGCTCTTCCGGCCCCTACCGTCATATTCC GCACCATAAAGCGCGTCTTCCCGACATGTCGCGTCTTCCGCGAGGTGCCGCCGGATGCCAAAGCCATCGAGTTAG ACGGAGCCGACTTTGCCAACATGGTCATCTTCTGCACCAAGTCAAATGCTCCGCTGACTTTCAGGAGGCCCACAC AGGCAGACCATCTTGAGAGCGCGACGAGGAAACAGTTCCTCAACCTCGACCACGAGATGCTCGAGTCCGAGTTTC TGTCCCGCGATGAAGACGAGACGACCATTTTGCGGAGAAACGATACCAGTGCGGTGGAGAAGTGGCACGAACAGG GCGCGCTGGGCCACTGGGCCATTATGAGGAGGATGCTCCCAGCCTCCGTATGGGAACGGTGGTGA

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