© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3769 |
| Gene name | |
| Location | scaffold_297:20298..22186 |
| Strand | + |
| Gene length (bp) | 1888 |
| Transcript length (bp) | 1590 |
| Coding sequence length (bp) | 1587 |
| Protein length (aa) | 529 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P83740|SC5A6_DROME | Putative sodium-dependent multivitamin transporter OS=Drosophila melanogaster GN=CG32669 PE=2 SV=1 | 14 | 213 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 29 | 19 |
| 2 | 49 | 71 | 22 |
| 3 | 81 | 103 | 22 |
| 4 | 124 | 143 | 19 |
| 5 | 163 | 185 | 22 |
| 6 | 192 | 209 | 17 |
| 7 | 229 | 251 | 22 |
| 8 | 272 | 294 | 22 |
| 9 | 314 | 336 | 22 |
| 10 | 357 | 374 | 17 |
| 11 | 379 | 401 | 22 |
| 12 | 413 | 435 | 22 |
| 13 | 459 | 481 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 65.64 | 35.72 | 95.57 |
| CcL | In ants, during behavior modification | 5.87 | 1.63 | 10.11 |
| CcD | In ants, recently dead | 8.58 | 3.20 | 13.96 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.258115 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3769 MGQPSVVASNAIIYTTYAAFLVLGTAVGWRMRGRARSTGELLSSNGSKSALPLALNFIASALGAGILFSYPEMAT VTGVQGVVVYAAATALPLLAFGAIGPVIRRRCPTGFVLTEWTRQRYGQGTMLYLSLLTLATLFLYMVAELSALGQ VVEALTGTGKLGVMVAECVVTTVYTSLGGFQVSFFTDVIQGALVLALVLLSAISVGVRTNAVKPGLVSSSGLTSP SLLGWQLLYVLPMAVTTNAFFVSSFWLRTFASRTDFDLRLGSCLAAVVVGCVLAAVGSAGLIAVWSGAWPGEPKR EASLALFALLERLPVWVVCVVVVMVVCLSTAALDSLQSAMVSSASNDLFGNSLAPRYVRGMVFIVIVPVIVVALK AVSILQVYLVSDLLSAATVPVLCLGLIDRMHWWRGFEVVAGGIGGILSVFLFGLVYHGNAVDGARLLILHRGLYA DDWSVFGAFVAAPLGGLVVAFAALALRLAFLFLRAKQRGERFDALDGPCDAGRVPGRQVHVTSGNDRPDTVDVKA GKFF |
| Coding | >Ophio5|3769 ATGGGACAGCCGTCGGTTGTGGCGTCCAACGCCATCATCTACACGACGTACGCGGCCTTTCTTGTGCTGGGGACG GCGGTCGGGTGGCGGATGAGAGGCCGGGCGCGGAGCACGGGAGAGCTGCTGTCGAGTAACGGGAGCAAATCCGCG TTACCGCTGGCTCTCAACTTTATCGCCTCTGCGCTCGGAGCCGGCATCCTCTTCTCCTACCCTGAGATGGCGACG GTGACAGGCGTCCAAGGCGTCGTCGTCTACGCCGCAGCGACGGCTCTCCCGCTGCTAGCCTTCGGGGCCATCGGG CCGGTGATCCGAAGACGATGTCCGACGGGCTTCGTGCTGACGGAATGGACTCGGCAGCGGTACGGGCAGGGTACG ATGCTCTACCTCAGTCTATTGACGCTGGCGACCTTGTTCCTGTACATGGTTGCCGAGTTGTCTGCCTTGGGACAG GTGGTCGAGGCCTTGACGGGGACGGGCAAGTTGGGTGTTATGGTGGCTGAGTGTGTGGTCACGACGGTTTATACG TCCCTCGGCGGCTTTCAAGTCTCCTTCTTTACCGACGTCATTCAGGGAGCCTTGGTGCTGGCTCTCGTCCTGCTT TCGGCCATCAGCGTGGGCGTACGGACCAATGCCGTGAAGCCAGGACTGGTATCGTCATCCGGACTGACCTCACCA TCACTCCTGGGCTGGCAGTTGCTCTACGTTCTTCCCATGGCCGTGACGACAAACGCCTTCTTCGTCTCGAGCTTC TGGTTGAGGACGTTTGCGTCGCGAACCGACTTTGATCTCCGCCTCGGTTCTTGTCTGGCCGCCGTCGTCGTCGGC TGCGTCCTCGCCGCCGTCGGATCCGCGGGCCTGATCGCGGTCTGGTCCGGTGCTTGGCCTGGCGAGCCGAAACGT GAAGCGTCGTTGGCGCTGTTTGCCCTGCTCGAGAGGTTGCCTGTTTGGGTGGTCTGCGTCGTCGTCGTCATGGTC GTGTGTCTGAGTACGGCGGCGCTGGATAGTCTACAGTCGGCCATGGTTTCGTCGGCTTCCAACGATCTCTTCGGC AACAGCTTGGCTCCGCGATATGTCCGTGGAATGGTGTTTATTGTCATCGTTCCTGTCATTGTCGTCGCCCTCAAA GCCGTCTCGATCCTGCAGGTTTACCTCGTCAGCGACTTACTTTCGGCCGCGACGGTGCCCGTCTTGTGTCTCGGC CTCATCGATAGGATGCATTGGTGGCGAGGCTTCGAAGTGGTCGCCGGCGGAATCGGGGGCATCCTTTCCGTTTTT CTCTTCGGCCTGGTCTATCACGGCAACGCTGTCGATGGCGCTCGCTTGTTGATTCTTCACCGTGGTCTTTACGCT GATGATTGGAGCGTCTTTGGCGCTTTCGTCGCTGCTCCGCTTGGTGGTCTTGTCGTCGCTTTCGCTGCCCTCGCC TTGCGCTTGGCCTTTCTCTTCCTCCGGGCCAAGCAGAGAGGTGAACGTTTCGATGCTCTTGATGGCCCCTGCGAT GCCGGAAGAGTGCCTGGTCGCCAGGTCCATGTCACTTCTGGAAATGACCGTCCGGATACTGTCGATGTCAAGGCC GGCAAGTTTTTC |
| Transcript | >Ophio5|3769 ATGGGACAGCCGTCGGTTGTGGCGTCCAACGCCATCATCTACACGACGTACGCGGCCTTTCTTGTGCTGGGGACG GCGGTCGGGTGGCGGATGAGAGGCCGGGCGCGGAGCACGGGAGAGCTGCTGTCGAGTAACGGGAGCAAATCCGCG TTACCGCTGGCTCTCAACTTTATCGCCTCTGCGCTCGGAGCCGGCATCCTCTTCTCCTACCCTGAGATGGCGACG GTGACAGGCGTCCAAGGCGTCGTCGTCTACGCCGCAGCGACGGCTCTCCCGCTGCTAGCCTTCGGGGCCATCGGG CCGGTGATCCGAAGACGATGTCCGACGGGCTTCGTGCTGACGGAATGGACTCGGCAGCGGTACGGGCAGGGTACG ATGCTCTACCTCAGTCTATTGACGCTGGCGACCTTGTTCCTGTACATGGTTGCCGAGTTGTCTGCCTTGGGACAG GTGGTCGAGGCCTTGACGGGGACGGGCAAGTTGGGTGTTATGGTGGCTGAGTGTGTGGTCACGACGGTTTATACG TCCCTCGGCGGCTTTCAAGTCTCCTTCTTTACCGACGTCATTCAGGGAGCCTTGGTGCTGGCTCTCGTCCTGCTT TCGGCCATCAGCGTGGGCGTACGGACCAATGCCGTGAAGCCAGGACTGGTATCGTCATCCGGACTGACCTCACCA TCACTCCTGGGCTGGCAGTTGCTCTACGTTCTTCCCATGGCCGTGACGACAAACGCCTTCTTCGTCTCGAGCTTC TGGTTGAGGACGTTTGCGTCGCGAACCGACTTTGATCTCCGCCTCGGTTCTTGTCTGGCCGCCGTCGTCGTCGGC TGCGTCCTCGCCGCCGTCGGATCCGCGGGCCTGATCGCGGTCTGGTCCGGTGCTTGGCCTGGCGAGCCGAAACGT GAAGCGTCGTTGGCGCTGTTTGCCCTGCTCGAGAGGTTGCCTGTTTGGGTGGTCTGCGTCGTCGTCGTCATGGTC GTGTGTCTGAGTACGGCGGCGCTGGATAGTCTACAGTCGGCCATGGTTTCGTCGGCTTCCAACGATCTCTTCGGC AACAGCTTGGCTCCGCGATATGTCCGTGGAATGGTGTTTATTGTCATCGTTCCTGTCATTGTCGTCGCCCTCAAA GCCGTCTCGATCCTGCAGGTTTACCTCGTCAGCGACTTACTTTCGGCCGCGACGGTGCCCGTCTTGTGTCTCGGC CTCATCGATAGGATGCATTGGTGGCGAGGCTTCGAAGTGGTCGCCGGCGGAATCGGGGGCATCCTTTCCGTTTTT CTCTTCGGCCTGGTCTATCACGGCAACGCTGTCGATGGCGCTCGCTTGTTGATTCTTCACCGTGGTCTTTACGCT GATGATTGGAGCGTCTTTGGCGCTTTCGTCGCTGCTCCGCTTGGTGGTCTTGTCGTCGCTTTCGCTGCCCTCGCC TTGCGCTTGGCCTTTCTCTTCCTCCGGGCCAAGCAGAGAGGTGAACGTTTCGATGCTCTTGATGGCCCCTGCGAT GCCGGAAGAGTGCCTGGTCGCCAGGTCCATGTCACTTCTGGAAATGACCGTCCGGATACTGTCGATGTCAAGGCC GGCAAGTTTTTCTGA |
| Gene | >Ophio5|3769 ATGGGACAGCCGTCGGTTGTGGCGTCCAACGCCATCATCTACACGACGTACGCGGCCTTTCTGTGAGTAGCGCCG CATTCTGTCTCCCGTCTCCTGTTTCTTTGCGTGACTGACGATGGAAAAAAAAAATTAAATTAAATAAAAGTGTGC TGGGGACGGCGGTCGGGTGGCGGATGAGAGGCCGGGCGCGGAGCACGGGAGAGCTGCTGTCGAGTAACGGGAGCA AATCCGGTTGGTGACCGGAGTGGTGAAGATGAGTAAGAGAGATTATGGCTGACTGGGGTTTGGGGTGGATGAACA GCGTTACCGCTGGCTCTCAACTTTATCGCCTCTGCGCTCGGAGCCGGCATCCTCTTCTCCTACCCTGAGATGGCG ACGGTGACAGGCGTCCAAGGCGTCGTCGTCTACGCCGCAGCGACGGCTCTCCCGCTGCTAGCCTTCGGGGCCATC GGGCCGGTGATCCGAAGACGATGTCCGACGGGCTTCGTGCTGACGGAATGGACTCGGCAGCGGTACGGGCAGGGT ACGATGCTCTACCTCAGTCTATTGACGCTGGCGACCTTGTTCCTGTACATGGTTGCCGAGTTGTCTGCCTTGGGA CAGGTGGTCGAGGCCTTGACGGGGACGGGCAAGTTGGGTGTTATGGTGGCTGAGTGTGTGGTCACGACGGTTTAT ACGTGTGAGTTGTCACCACCCTTTACTTTGGCGTTTTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCCTCTCCCCC CTTTTCCACAAACGGTTCTTCTCAGAGAGAGAGAGACAACACAAAAGACTGACCTCGGTAACCCCCCTCAGAAGC CCTCGGCGGCTTTCAAGTCTCCTTCTTTACCGACGTCATTCAGGGAGCCTTGGTGCTGGCTCTCGTCCTGCTTTC GGCCATCAGCGTGGGCGTACGGACCAATGCCGTGAAGCCAGGACTGGTATCGTCATCCGGACTGACCTCACCATC ACTCCTGGGCTGGCAGTTGCTCTACGTTCTTCCCATGGCCGTGACGACAAACGCCTTCTTCGTCTCGAGCTTCTG GTTGAGGACGTTTGCGTCGCGAACCGACTTTGATCTCCGCCTCGGTTCTTGTCTGGCCGCCGTCGTCGTCGGCTG CGTCCTCGCCGCCGTCGGATCCGCGGGCCTGATCGCGGTCTGGTCCGGTGCTTGGCCTGGCGAGCCGAAACGTGA AGCGTCGTTGGCGCTGTTTGCCCTGCTCGAGAGGTTGCCTGTTTGGGTGGTCTGCGTCGTCGTCGTCATGGTCGT GTGTCTGAGTACGGCGGCGCTGGATAGTCTACAGTCGGCCATGGTTTCGTCGGCTTCCAACGATCTCTTCGGCAA CAGCTTGGCTCCGCGATATGTCCGTGGAATGGTGTTTATTGTCATCGTTCCTGTCATTGTCGTCGCCCTCAAAGC CGTCTCGATCCTGCAGGTTTACCTCGTCAGCGACTTACTTTCGGCCGCGACGGTGCCCGTCTTGTGTCTCGGCCT CATCGATAGGATGCATTGGTGGCGAGGCTTCGAAGTGGTCGCCGGCGGAATCGGGGGCATCCTTTCCGTTTTTCT CTTCGGCCTGGTCTATCACGGCAACGCTGTCGATGGCGCTCGCTTGTTGATTCTTCACCGTGGTCTTTACGCTGA TGATTGGAGCGTCTTTGGCGCTTTCGTCGCTGCTCCGCTTGGTGGTCTTGTCGTCGCTTTCGCTGCCCTCGCCTT GCGCTTGGCCTTTCTCTTCCTCCGGGCCAAGCAGAGAGGTGAACGTTTCGATGCTCTTGATGGCCCCTGCGATGC CGGAAGAGTGCCTGGTCGCCAGGTCCATGTCACTTCTGGAAATGACCGTCCGGATACTGTCGATGTCAAGGCCGG CAAGTTTTTCTGA |