Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3754
Gene name
Locationscaffold_296:15597..16293
Strand+
Gene length (bp)696
Transcript length (bp)555
Coding sequence length (bp)552
Protein length (aa) 184

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06417 DUF1077 Protein of unknown function (DUF1077) 1.6E-50 57 172

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O94520|YQ13_SCHPO ER membrane protein complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1281.03c PE=3 SV=1 30 180 8.0E-32
sp|P53073|EMC4_YEAST ER membrane protein complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC4 PE=1 SV=1 17 171 4.0E-26
sp|Q6GR43|EMC4_XENLA ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4 PE=2 SV=1 57 168 4.0E-21
sp|Q6PBF7|EMC4_XENTR ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4 PE=2 SV=1 57 168 3.0E-20
sp|Q6P011|EMC4_DANRE ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2 SV=1 47 177 5.0E-20
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O94520|YQ13_SCHPO ER membrane protein complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1281.03c PE=3 SV=1 30 180 8.0E-32
sp|P53073|EMC4_YEAST ER membrane protein complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC4 PE=1 SV=1 17 171 4.0E-26
sp|Q6GR43|EMC4_XENLA ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4 PE=2 SV=1 57 168 4.0E-21
sp|Q6PBF7|EMC4_XENTR ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4 PE=2 SV=1 57 168 3.0E-20
sp|Q6P011|EMC4_DANRE ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2 SV=1 47 177 5.0E-20
sp|B5XB24|EMC4_SALSA ER membrane protein complex subunit 4 OS=Salmo salar GN=emc4 PE=2 SV=1 47 168 5.0E-20
sp|Q9CZX9|EMC4_MOUSE ER membrane protein complex subunit 4 OS=Mus musculus GN=Emc4 PE=1 SV=1 41 168 1.0E-19
sp|Q5RC35|EMC4_PONAB ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4 PE=2 SV=1 41 168 1.0E-19
sp|Q5J8M3|EMC4_HUMAN ER membrane protein complex subunit 4 OS=Homo sapiens GN=EMC4 PE=1 SV=2 41 168 1.0E-19
sp|Q3T0K8|EMC4_BOVIN ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2 SV=1 57 168 2.0E-19
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 94 116 22
2 137 159 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3754
MASSTPTPAVPPWIIQLDTPPVGRNRVPGIPDPPGFSSSSGSKKKDPRAQPKRPAPTQDEMETLKLKKAWEVALA
PVKSLPMTAIMMYMSGNSLQIFSIMMVFMAFKNPLVGLISTNQAFEKFRTDSNEAKLLQTKVVYVAMQLVALAVG
VWKVNAMGLLPTTRSDWLMWESQRLSVDRAVTAL
Coding >Ophio5|3754
ATGGCTTCGTCGACTCCCACACCCGCCGTCCCTCCCTGGATCATCCAGCTCGACACTCCGCCGGTAGGCAGGAAT
CGTGTGCCCGGCATCCCGGACCCGCCGGGCTTCTCCAGCTCTTCCGGCTCCAAGAAAAAGGATCCGAGAGCGCAG
CCGAAAAGACCCGCCCCGACACAAGACGAGATGGAGACGCTCAAGCTCAAGAAGGCGTGGGAGGTGGCCCTCGCC
CCCGTCAAGTCGCTGCCCATGACGGCCATCATGATGTACATGTCGGGAAACTCGCTGCAGATATTTAGCATCATG
ATGGTCTTCATGGCCTTTAAGAATCCCCTGGTCGGCTTAATCAGCACCAATCAGGCCTTTGAGAAGTTTCGAACC
GACAGCAACGAGGCCAAGCTGTTGCAGACCAAGGTCGTCTACGTCGCTATGCAACTTGTGGCATTGGCCGTCGGC
GTCTGGAAAGTCAACGCCATGGGTCTCTTGCCGACAACTCGATCGGACTGGCTCATGTGGGAGTCCCAGAGGCTG
TCTGTGGATCGGGCTGTAACAGCTTTG
Transcript >Ophio5|3754
ATGGCTTCGTCGACTCCCACACCCGCCGTCCCTCCCTGGATCATCCAGCTCGACACTCCGCCGGTAGGCAGGAAT
CGTGTGCCCGGCATCCCGGACCCGCCGGGCTTCTCCAGCTCTTCCGGCTCCAAGAAAAAGGATCCGAGAGCGCAG
CCGAAAAGACCCGCCCCGACACAAGACGAGATGGAGACGCTCAAGCTCAAGAAGGCGTGGGAGGTGGCCCTCGCC
CCCGTCAAGTCGCTGCCCATGACGGCCATCATGATGTACATGTCGGGAAACTCGCTGCAGATATTTAGCATCATG
ATGGTCTTCATGGCCTTTAAGAATCCCCTGGTCGGCTTAATCAGCACCAATCAGGCCTTTGAGAAGTTTCGAACC
GACAGCAACGAGGCCAAGCTGTTGCAGACCAAGGTCGTCTACGTCGCTATGCAACTTGTGGCATTGGCCGTCGGC
GTCTGGAAAGTCAACGCCATGGGTCTCTTGCCGACAACTCGATCGGACTGGCTCATGTGGGAGTCCCAGAGGCTG
TCTGTGGATCGGGCTGTAACAGCTTTGTGA
Gene >Ophio5|3754
ATGGCTTCGTCGACTCCCACACCCGCCGTCCCTCCCTGGATCATCCAGCTCGACACTCCGCCGGTAGGCAGGAAT
CGTGTGCCCGGCATCCCGGACCCGCCGGGCTTCTCCAGCTCTTCCGGCTCCAAGGTGAGAGAGAGAGACTGCGCG
CGCGCGAGAGAGAGAGAGAGAGTCTCGCTTTCTCGCACGACACAGCAAGAGGCTAACGGATTATCACAGAAAAAG
GATCCGAGAGCGCAGCCGAAAAGACCCGCCCCGACACAAGACGAGATGGAGACGCTCAAGCTCAAGAAGGCGTGG
GAGGTGGCCCTCGCCCCCGTCAAGTCGCTGCCCATGACGGCCATCATGATGTACATGTCGGGAAACTCGCTGCAG
ATATTTAGCATCATGATGGTCTTCATGGCCTTTAAGAATCCCCTGGTCGGCTTAATCAGCACCAATCAGGCCTTT
GAGAAGTTTCGAACCGACAGCAACGAGGCCAAGCTGTTGCAGACCAAGGTCGTCTACGTCGCTATGCAACTTGTG
GCATTGGCCGTCGGCGTCTGGAAAGTCAACGCCATGGGTCTCTTGCCGTGCGTATCCATGTCGCGCCGGGCAGCT
AGCCAGGCTGACAGCAAGAACAGGACAACTCGATCGGACTGGCTCATGTGGGAGTCCCAGAGGCTGTCTGTGGAT
CGGGCTGTAACAGCTTTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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