© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3735 |
| Gene name | |
| Location | scaffold_294:22678..24525 |
| Strand | + |
| Gene length (bp) | 1847 |
| Transcript length (bp) | 1494 |
| Coding sequence length (bp) | 1491 |
| Protein length (aa) | 497 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05577 | Peptidase_S28 | Serine carboxypeptidase S28 | 1.3E-25 | 35 | 436 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5RBU7|PCP_PONAB | Lysosomal Pro-X carboxypeptidase OS=Pongo abelii GN=PRCP PE=2 SV=1 | 29 | 435 | 6.0E-14 |
| sp|P42785|PCP_HUMAN | Lysosomal Pro-X carboxypeptidase OS=Homo sapiens GN=PRCP PE=1 SV=1 | 29 | 435 | 2.0E-13 |
| sp|Q2TA14|PCP_BOVIN | Lysosomal Pro-X carboxypeptidase OS=Bos taurus GN=PRCP PE=2 SV=1 | 41 | 434 | 4.0E-13 |
| sp|Q7TMR0|PCP_MOUSE | Lysosomal Pro-X carboxypeptidase OS=Mus musculus GN=Prcp PE=1 SV=2 | 78 | 435 | 4.0E-11 |
| sp|D4AYS6|A1345_ARTBC | Probable extracellular serine carboxypeptidase OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01345 PE=1 SV=1 | 25 | 188 | 1.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5RBU7|PCP_PONAB | Lysosomal Pro-X carboxypeptidase OS=Pongo abelii GN=PRCP PE=2 SV=1 | 29 | 435 | 6.0E-14 |
| sp|P42785|PCP_HUMAN | Lysosomal Pro-X carboxypeptidase OS=Homo sapiens GN=PRCP PE=1 SV=1 | 29 | 435 | 2.0E-13 |
| sp|Q2TA14|PCP_BOVIN | Lysosomal Pro-X carboxypeptidase OS=Bos taurus GN=PRCP PE=2 SV=1 | 41 | 434 | 4.0E-13 |
| sp|Q7TMR0|PCP_MOUSE | Lysosomal Pro-X carboxypeptidase OS=Mus musculus GN=Prcp PE=1 SV=2 | 78 | 435 | 4.0E-11 |
| sp|D4AYS6|A1345_ARTBC | Probable extracellular serine carboxypeptidase OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01345 PE=1 SV=1 | 25 | 188 | 1.0E-09 |
| sp|P34676|PCP5_CAEEL | Prolyl carboxy peptidase like protein 5 OS=Caenorhabditis elegans GN=pcp-5 PE=1 SV=1 | 39 | 190 | 2.0E-08 |
| sp|Q9EPB1|DPP2_RAT | Dipeptidyl peptidase 2 OS=Rattus norvegicus GN=Dpp7 PE=1 SV=1 | 84 | 223 | 2.0E-08 |
| sp|P34528|YM67_CAEEL | Putative serine protease K12H4.7 OS=Caenorhabditis elegans GN=K12H4.7 PE=3 SV=2 | 27 | 246 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006508 | proteolysis | Yes |
| GO:0008236 | serine-type peptidase activity | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0008233 | peptidase activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0017171 | serine hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 15 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 1.75 | 0.23 | 3.27 |
| CcL | In ants, during behavior modification | 8.02 | 2.39 | 13.65 |
| CcD | In ants, recently dead | 2.93 | 0.63 | 5.23 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.224879 | no |
| CcL | CcD | 0.005848 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3735 MIPIPFFLFKNAVCFLVGICQDGHHLISQPVNHSDSEGVQFTQQYATITNYFEDGGPIVVQLTHRSPQLDVEQSL SRDYARAWRGMAVSIEHRYFGASQPNGFKNRDASFEHLTLENVMADVVRVVQHIRFTTPGCLRSEVIAHGDGYWG FVAVALRQNYPDIFFAALAIAPPTRSFFLNPRPQDADQFLYRDHVSRVYHRRSSLGAANIRKSFLFLEDQFLERR DMKRLQSKLNLCTRPHSNDSTHLNQLVEVYANAIIGPAAMVYANTIAVPTALDYAMGWHKYHFGPMNRVVERAAS FTDPTSDKKAFHVYGNFLRWVDENWYSRRRNACLDWTGLKVFKQKWSDDLSTKSASYIGCTYFPLCTLNANESGI FLPRTTNCEGLVQNCMEMFEDKAIALTQEEVWTRYKMSPEDLNNSSRILFSVDRSDPMSSLVGGYAPEGINVAWS SCDHVHRIEHDMIARRTQPDFDQWKAEETHVISRWLMSCTRNITWGR |
| Coding | >Ophio5|3735 ATGATACCGATACCATTCTTCCTTTTCAAGAACGCAGTTTGTTTTTTAGTTGGGATTTGCCAAGATGGTCATCAT CTCATCTCTCAGCCAGTCAATCACTCCGATAGCGAAGGAGTCCAATTTACACAGCAATATGCCACGATTACGAAC TATTTCGAGGACGGAGGTCCGATTGTCGTGCAGTTGACCCACCGAAGCCCCCAACTAGATGTGGAACAATCCTTG AGCCGTGATTACGCCAGAGCGTGGCGAGGCATGGCGGTATCTATCGAGCATCGCTATTTCGGTGCCAGTCAGCCG AATGGGTTCAAGAACCGTGACGCCTCGTTTGAGCACCTGACTTTGGAAAATGTCATGGCCGACGTCGTACGTGTC GTCCAGCATATACGATTCACGACGCCAGGCTGTTTACGGAGCGAGGTCATCGCTCATGGCGACGGTTACTGGGGC TTCGTCGCCGTGGCTTTGCGACAGAACTACCCAGACATCTTCTTTGCCGCCCTTGCCATAGCACCTCCTACTCGA AGCTTCTTTTTGAACCCGAGGCCGCAGGACGCCGATCAGTTCCTCTACCGAGATCATGTCAGCCGAGTTTATCAT CGTCGTTCCTCGCTCGGCGCGGCAAACATCAGGAAATCCTTCCTCTTCCTTGAGGATCAGTTTCTAGAGCGTAGG GACATGAAACGCCTACAGTCCAAGCTAAATCTATGCACAAGGCCTCATTCTAATGATTCGACGCACTTGAATCAG CTCGTCGAGGTCTACGCAAACGCCATTATCGGCCCTGCTGCCATGGTCTACGCAAACACCATTGCCGTCCCTACT GCCTTGGACTACGCCATGGGGTGGCACAAATACCATTTCGGTCCAATGAATCGTGTAGTCGAGCGAGCTGCGAGC TTCACTGACCCTACCTCTGATAAAAAAGCGTTCCATGTATACGGGAATTTCCTCCGCTGGGTCGACGAGAATTGG TACAGTCGACGCAGGAACGCATGTCTGGACTGGACAGGCCTGAAAGTCTTTAAGCAAAAGTGGTCTGACGACCTG TCCACCAAGTCGGCGAGCTACATCGGCTGCACTTACTTTCCCCTGTGCACGTTGAACGCCAATGAAAGCGGTATA TTCCTACCTCGGACAACTAACTGTGAAGGGCTGGTGCAAAATTGCATGGAAATGTTTGAAGACAAAGCCATTGCA CTCACGCAGGAGGAAGTGTGGACACGGTACAAGATGAGCCCTGAGGACTTGAACAACTCGAGCCGCATTCTCTTC TCTGTCGACCGGTCGGACCCCATGAGCTCGCTGGTGGGTGGATATGCGCCGGAAGGCATCAATGTGGCATGGTCC AGTTGCGACCATGTCCATCGCATCGAGCACGATATGATTGCACGCCGGACCCAGCCTGATTTTGATCAGTGGAAA GCGGAAGAGACACATGTCATTTCGAGGTGGCTGATGAGTTGCACGCGGAACATCACCTGGGGTAGG |
| Transcript | >Ophio5|3735 ATGATACCGATACCATTCTTCCTTTTCAAGAACGCAGTTTGTTTTTTAGTTGGGATTTGCCAAGATGGTCATCAT CTCATCTCTCAGCCAGTCAATCACTCCGATAGCGAAGGAGTCCAATTTACACAGCAATATGCCACGATTACGAAC TATTTCGAGGACGGAGGTCCGATTGTCGTGCAGTTGACCCACCGAAGCCCCCAACTAGATGTGGAACAATCCTTG AGCCGTGATTACGCCAGAGCGTGGCGAGGCATGGCGGTATCTATCGAGCATCGCTATTTCGGTGCCAGTCAGCCG AATGGGTTCAAGAACCGTGACGCCTCGTTTGAGCACCTGACTTTGGAAAATGTCATGGCCGACGTCGTACGTGTC GTCCAGCATATACGATTCACGACGCCAGGCTGTTTACGGAGCGAGGTCATCGCTCATGGCGACGGTTACTGGGGC TTCGTCGCCGTGGCTTTGCGACAGAACTACCCAGACATCTTCTTTGCCGCCCTTGCCATAGCACCTCCTACTCGA AGCTTCTTTTTGAACCCGAGGCCGCAGGACGCCGATCAGTTCCTCTACCGAGATCATGTCAGCCGAGTTTATCAT CGTCGTTCCTCGCTCGGCGCGGCAAACATCAGGAAATCCTTCCTCTTCCTTGAGGATCAGTTTCTAGAGCGTAGG GACATGAAACGCCTACAGTCCAAGCTAAATCTATGCACAAGGCCTCATTCTAATGATTCGACGCACTTGAATCAG CTCGTCGAGGTCTACGCAAACGCCATTATCGGCCCTGCTGCCATGGTCTACGCAAACACCATTGCCGTCCCTACT GCCTTGGACTACGCCATGGGGTGGCACAAATACCATTTCGGTCCAATGAATCGTGTAGTCGAGCGAGCTGCGAGC TTCACTGACCCTACCTCTGATAAAAAAGCGTTCCATGTATACGGGAATTTCCTCCGCTGGGTCGACGAGAATTGG TACAGTCGACGCAGGAACGCATGTCTGGACTGGACAGGCCTGAAAGTCTTTAAGCAAAAGTGGTCTGACGACCTG TCCACCAAGTCGGCGAGCTACATCGGCTGCACTTACTTTCCCCTGTGCACGTTGAACGCCAATGAAAGCGGTATA TTCCTACCTCGGACAACTAACTGTGAAGGGCTGGTGCAAAATTGCATGGAAATGTTTGAAGACAAAGCCATTGCA CTCACGCAGGAGGAAGTGTGGACACGGTACAAGATGAGCCCTGAGGACTTGAACAACTCGAGCCGCATTCTCTTC TCTGTCGACCGGTCGGACCCCATGAGCTCGCTGGTGGGTGGATATGCGCCGGAAGGCATCAATGTGGCATGGTCC AGTTGCGACCATGTCCATCGCATCGAGCACGATATGATTGCACGCCGGACCCAGCCTGATTTTGATCAGTGGAAA GCGGAAGAGACACATGTCATTTCGAGGTGGCTGATGAGTTGCACGCGGAACATCACCTGGGGTAGGTAG |
| Gene | >Ophio5|3735 ATGATACCGATACCATTCTTCCTTTTCAAGAACGCAGTTTGTTTTTTAGTTGGGATTTGCCAAGATGGTCATCAT CTCATCTCTCAGCCAGTCAATCACTCCGATAGCGAAGGAGTCCAATTTACACAGCAATATGCCACGATTACGAAC TATTTCGAGGACGGAGGTCCGATTGTCGTGCAGTTGACCCACCGAAGCCCCCAACTAGATGTGGTATGACACGGA CGGCTGGACTGACTGACTGACGGACTGGCTGACGGACTGGCCGATGGTAGGAACAATCCTTGAGCCGTGATTACG CCAGAGCGTGGCGAGGCATGGCGGTATCTATCGAGCATCGCTATTTCGGTGCCAGTCAGCCGAATGGGTTCAAGA ACCGTGACGCCTCGTTTGAGCACCTGACTTTGGAAAATGTCATGGCCGACGTCGTACGTGTCGTCCAGCATATAC GATTCACGACGCCAGGCTGTTTACGGAGCGAGGTCATCGCTCATGGCGGTAAGGGAAGCACCTTTTGACACAAAG CGGCACTGATCTGTCTTGTCTGATGCTAGACGGTTACTGGGGCTTCGTCGCCGTGGCTTTGCGACAGAACTACCC AGACATCTTCTTTGCCGCCCTTGCCATAGCACCTCCTACTCGAAGCTTCTTTTTGAACCCGAGGCCGCAGGACGC CGATCAGTTCCTCTACCGAGATCATGTGAGTCCAACGTTTCCGGACGGACAAGGAAAGCAAACTAAGCTGGCGAT GGCTCCTAGGTCAGCCGAGTTTATCATCGTCGTTCCTCGCTCGGCGCGGCAAACATCAGGAAATCCTTCCTCTTC CTTGAGGATCAGTTTCTAGAGCGTAGTACGTGACGCCTCCCCCGCCACGTTGCGTGCATTGCTCACCAGCAACCT GACTAGGGGACATGAAACGCCTACAGTCCAAGCTAAATCTATGCACAAGGCCTCATTCTAATGATTCGACGCACT TGAATCAGCTCGTCGAGGTCTACGCAAACGCCATTATCGGCCCTGCTGCCATGGTCTACGCAAACACCATTGCCG TCCCTACTGCCTTGGACTACGCCATGGGGTGGCACAAATACCATTTCGGTCCAATGAATCGTGTAGTCGAGCGAG CTGCGAGCTTCACTGACCCTACCTCTGATAAAAAAGCGTTCCATGTATACGGGAATTTCCTCCGCTGGGTCGACG AGAATTGGTACAGTCGACGCAGGAACGCATGTCTGGACTGGACAGGCCTGAAAGTCTTTAAGCAAAAGTGGTCTG ACGACCTGTCCACCAAGTCGGCGAGCTACATCGGCTGTGAGCTCACCATTATCGTGTCCCGGCGCAAAGAAGTCG TAACTAATGCGGCGGTGCAGGCACTTACTTTCCCCTGTGCACGTTGAACGCCAATGAAAGCGGTATATTCCTACC TCGGACAACTAACTGTGAAGGGCTGGTGCAAAATTGCATGGAAATGTTTGAAGACAAAGCCATTGCACTCACGCA GGAGGAAGTGTGGACACGGTACAAGATGAGCCCTGAGGACTTGAACAACTCGAGCCGCATTCTCTTCTCTGTCGA CCGGTCGGACCCCATGAGCTCGCTGGTGGGTGGATATGCGCCGGAAGGCATCAATGTGGCATGGTCCAGTTGCGA CCATGTCCATCGCATCGAGCACGATATGATTGCACGCCGGACCCAGCCTGATTTTGATCAGGTGAGTAGCCGATG ACTCCTGGTGGTGGTGAGATGAGCTAAACTGACTGTCCGGGACGTAGTGGAAAGCGGAAGAGACACATGTCATTT CGAGGTGGCTGATGAGTTGCACGCGGAACATCACCTGGGGTAGGTAG |