Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3722
Gene name
Location	scaffold_293:17337..17802
Strand	+
Gene length (bp)	465
Transcript length (bp)	465
Coding sequence length (bp)	462
Protein length (aa)	154

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	9.7E-08	3	58

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3722 MQRVKGVRRVVRFKSGVWSLAEAKYDARKRECKAVLCAIKRLRMQLYGVDFVIETDAQGPRGSAEGVSEGRSRGN SDPLGQLYLLIRRHPGHLSDQDPGWLPPSNRDLVFEPDNAQLLCTLTRDAEQVALINEGDTFPDRISRTRAHPIR PSPI
Coding	>Ophio5\|3722 ATGCAGCGTGTCAAGGGCGTTCGCAGGGTAGTCCGTTTTAAAAGCGGCGTTTGGTCCCTTGCCGAGGCAAAGTAC GACGCAAGGAAGAGGGAATGCAAGGCTGTTCTTTGCGCCATCAAACGATTACGGATGCAGCTCTACGGAGTTGAC TTTGTCATCGAAACAGATGCCCAGGGTCCTCGTGGATCAGCTGAAGGGGTCTCTGAAGGACGCTCCAGGGGCAAT AGTGACCCGTTGGGTCAGCTATATCTTCTTATACGACGTCATCCCGGCCACCTCTCAGATCAAGATCCCGGTTGG CTTCCCCCATCCAACCGGGACCTGGTCTTTGAACCAGATAATGCTCAGCTGCTTTGCACGCTGACCCGGGACGCC GAGCAGGTCGCACTTATTAACGAAGGAGACACCTTCCCCGACCGCATAAGCCGCACTCGAGCGCATCCGATACGT CCCAGCCCTATT
Transcript	>Ophio5\|3722 ATGCAGCGTGTCAAGGGCGTTCGCAGGGTAGTCCGTTTTAAAAGCGGCGTTTGGTCCCTTGCCGAGGCAAAGTAC GACGCAAGGAAGAGGGAATGCAAGGCTGTTCTTTGCGCCATCAAACGATTACGGATGCAGCTCTACGGAGTTGAC TTTGTCATCGAAACAGATGCCCAGGGTCCTCGTGGATCAGCTGAAGGGGTCTCTGAAGGACGCTCCAGGGGCAAT AGTGACCCGTTGGGTCAGCTATATCTTCTTATACGACGTCATCCCGGCCACCTCTCAGATCAAGATCCCGGTTGG CTTCCCCCATCCAACCGGGACCTGGTCTTTGAACCAGATAATGCTCAGCTGCTTTGCACGCTGACCCGGGACGCC GAGCAGGTCGCACTTATTAACGAAGGAGACACCTTCCCCGACCGCATAAGCCGCACTCGAGCGCATCCGATACGT CCCAGCCCTATTTAA
Gene	>Ophio5\|3722 ATGCAGCGTGTCAAGGGCGTTCGCAGGGTAGTCCGTTTTAAAAGCGGCGTTTGGTCCCTTGCCGAGGCAAAGTAC GACGCAAGGAAGAGGGAATGCAAGGCTGTTCTTTGCGCCATCAAACGATTACGGATGCAGCTCTACGGAGTTGAC TTTGTCATCGAAACAGATGCCCAGGGTCCTCGTGGATCAGCTGAAGGGGTCTCTGAAGGACGCTCCAGGGGCAAT AGTGACCCGTTGGGTCAGCTATATCTTCTTATACGACGTCATCCCGGCCACCTCTCAGATCAAGATCCCGGTTGG CTTCCCCCATCCAACCGGGACCTGGTCTTTGAACCAGATAATGCTCAGCTGCTTTGCACGCTGACCCGGGACGCC GAGCAGGTCGCACTTATTAACGAAGGAGACACCTTCCCCGACCGCATAAGCCGCACTCGAGCGCATCCGATACGT CCCAGCCCTATTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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