Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3719
Gene name
Locationscaffold_293:11543..12117
Strand-
Gene length (bp)574
Transcript length (bp)396
Coding sequence length (bp)393
Protein length (aa) 131

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00293 NUDIX NUDIX domain 1.9E-06 30 100

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q10132|IDI1_SCHPO Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=idi1 PE=2 SV=2 29 118 1.0E-29
sp|P15496|IDI1_YEAST Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IDI1 PE=1 SV=2 17 131 6.0E-25
sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1 27 123 9.0E-24
sp|O35586|IDI1_MESAU Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1 32 131 2.0E-19
sp|O35760|IDI1_RAT Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2 29 116 1.0E-18
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q10132|IDI1_SCHPO Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=idi1 PE=2 SV=2 29 118 1.0E-29
sp|P15496|IDI1_YEAST Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IDI1 PE=1 SV=2 17 131 6.0E-25
sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1 27 123 9.0E-24
sp|O35586|IDI1_MESAU Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1 32 131 2.0E-19
sp|O35760|IDI1_RAT Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2 29 116 1.0E-18
sp|Q1LZ95|IDI1_BOVIN Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2 29 116 1.0E-18
sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3 29 131 5.0E-18
sp|P58044|IDI1_MOUSE Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=1 SV=1 29 116 2.0E-17
sp|Q13907|IDI1_HUMAN Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2 29 116 1.0E-16
sp|Q4R4W5|IDI1_MACFA Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2 29 131 1.0E-16
sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1 29 131 1.0E-16
sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic OS=Arabidopsis thaliana GN=IPP2 PE=1 SV=1 29 118 2.0E-16
sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1 29 123 2.0E-16
sp|Q5R8R6|IDI1_PONAB Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2 29 116 4.0E-16
sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2 29 116 8.0E-16
sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2 29 116 1.0E-15
sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1 29 116 5.0E-15
sp|Q9NH02|IDI_DICDI Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1 15 117 1.0E-11
sp|Q8BFZ6|IDI2_MOUSE Isopentenyl-diphosphate delta-isomerase 2 OS=Mus musculus GN=Idi2 PE=2 SV=1 36 121 4.0E-08
sp|Q9BXS1|IDI2_HUMAN Isopentenyl-diphosphate delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1 36 116 1.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 28 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3719
MAMMVAPAPDGRHAIPAVPRHRHDVRGAVPFDQFRLLTRIHYQSARDDTWGEDEIDYMLFIKAPVKLHLNDNEVQ
ATQYVSASTLKEMVQDPSFSFTPWFKLICGSILFDWWEKLDSSMTENGREEDIRRM
Coding >Ophio5|3719
ATGGCCATGATGGTAGCCCCAGCCCCTGACGGCCGACACGCTATCCCAGCTGTTCCCCGACATCGACACGACGTC
CGAGGCGCTGTCCCATTCGACCAGTTTCGCCTCTTAACCCGCATTCATTATCAGTCGGCTAGGGACGATACGTGG
GGAGAAGATGAGATCGATTACATGCTCTTCATCAAGGCTCCGGTTAAGCTCCATCTTAACGATAACGAGGTCCAA
GCAACGCAGTACGTGAGTGCCTCGACACTGAAGGAGATGGTCCAGGACCCTTCTTTCAGCTTTACGCCCTGGTTC
AAGCTCATATGCGGCTCCATCCTGTTTGACTGGTGGGAGAAGCTGGACAGCAGTATGACAGAGAACGGCCGGGAG
GAGGACATCCGGCGCATG
Transcript >Ophio5|3719
ATGGCCATGATGGTAGCCCCAGCCCCTGACGGCCGACACGCTATCCCAGCTGTTCCCCGACATCGACACGACGTC
CGAGGCGCTGTCCCATTCGACCAGTTTCGCCTCTTAACCCGCATTCATTATCAGTCGGCTAGGGACGATACGTGG
GGAGAAGATGAGATCGATTACATGCTCTTCATCAAGGCTCCGGTTAAGCTCCATCTTAACGATAACGAGGTCCAA
GCAACGCAGTACGTGAGTGCCTCGACACTGAAGGAGATGGTCCAGGACCCTTCTTTCAGCTTTACGCCCTGGTTC
AAGCTCATATGCGGCTCCATCCTGTTTGACTGGTGGGAGAAGCTGGACAGCAGTATGACAGAGAACGGCCGGGAG
GAGGACATCCGGCGCATGTAA
Gene >Ophio5|3719
ATGGCCATGATGGTAGCCCCAGCCCCTGACGGCCGACACGCTATCCCAGCTGTTCCCCGACATCGACACGACGTC
CGAGGCGCTGTGCGGCCAAGACGAGGAGCAAGATGCGGCTGACGAAGGAAATGTGCATCGTCACCGACGAAAATG
ACATAAAAACGCGGCGCAGCTTCCGGCTGCATCACGAACTAGGCATTAACCCTACGCAGGTCCCATTCGACCAGT
TTCGCCTCTTAACCCGCATTCATTATCAGTCGGCTAGGGACGATACGTGGGGAGAAGATGAGAGTATGTCAATCA
TTTTCAATAAGCCGGCGCTGATGCTTACGCGGGCTTGGCAGTCGATTACATGCTCTTCATCAAGGCTCCGGTTAA
GCTCCATCTTAACGATAACGAGGTCCAAGCAACGCAGTACGTGAGTGCCTCGACACTGAAGGAGATGGTCCAGGA
CCCTTCTTTCAGCTTTACGCCCTGGTTCAAGCTCATATGCGGCTCCATCCTGTTTGACTGGTGGGAGAAGCTGGA
CAGCAGTATGACAGAGAACGGCCGGGAGGAGGACATCCGGCGCATGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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