Protein ID | Ophio5|3695 |
Gene name | |
Location | scaffold_291:10354..11423 |
Strand | - |
Gene length (bp) | 1069 |
Transcript length (bp) | 996 |
Coding sequence length (bp) | 993 |
Protein length (aa) | 331 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05368 | NmrA | NmrA-like family | 4.6E-29 | 14 | 274 |
PF13460 | NAD_binding_10 | NAD(P)H-binding | 1.2E-10 | 18 | 102 |
PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 2.3E-05 | 14 | 77 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q0VCN1|NMRL1_BOVIN | NmrA-like family domain-containing protein 1 OS=Bos taurus GN=NMRAL1 PE=2 SV=1 | 8 | 242 | 4.0E-20 |
sp|Q5ZID0|NMRL1_CHICK | NmrA-like family domain-containing protein 1 OS=Gallus gallus GN=NMRAL1 PE=2 SV=1 | 8 | 194 | 4.0E-19 |
sp|Q8K2T1|NMRL1_MOUSE | NmrA-like family domain-containing protein 1 OS=Mus musculus GN=Nmral1 PE=1 SV=1 | 12 | 242 | 1.0E-18 |
sp|Q9HBL8|NMRL1_HUMAN | NmrA-like family domain-containing protein 1 OS=Homo sapiens GN=NMRAL1 PE=1 SV=1 | 8 | 254 | 6.0E-18 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.6089 | 0.3133 | 0.5168 | 0.1016 | 0.4107 | 0.2496 | 0.0842 | 0.1495 | 0.2714 | 0.1826 |
Orthofinder run ID | 4 |
Orthogroup | 298 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|3695 MSSSPRLMDAAKFVCVVGATGNQGGSVARRFLHAGFRVRALTRKPSSASASALAALGADIVEADLDDAGSLHRAF AGAAIIFTVTNYWEPFFRDDCRDEARARGVSCRRYAGDVERQQGVNMADAAAATVATLEENGFIVSTLSHAGHCS RGRISELYHFDAKADVFPGYVREAHPTLAAKMSCVHTGYFFTSFALLPRSYFAKTTDGTIEMAFPTSASKPVPHL DPVGDMGNFVYAVRQMPPGRAYMAAGTTCPWPDFLSTWGRVAGYRVCYREVSSEEMVQATPDAEMGLEVALMFAY SSDPGYDGGMALLTADDIRAVSGRPPSPTPS |
Coding | >Ophio5|3695 ATGTCCTCGTCGCCAAGATTGATGGACGCCGCCAAGTTTGTCTGCGTCGTCGGCGCTACCGGCAACCAAGGCGGC TCCGTCGCCCGACGCTTCCTCCACGCCGGCTTCCGAGTACGGGCCTTGACACGGAAGCCATCTTCGGCCTCGGCC TCGGCCCTCGCCGCGCTGGGGGCCGACATAGTCGAGGCCGACCTGGACGACGCGGGCAGTCTTCATCGGGCATTT GCGGGCGCAGCCATCATCTTCACCGTCACCAATTACTGGGAGCCCTTCTTCCGCGACGATTGTCGCGATGAGGCG CGGGCCCGAGGCGTTTCGTGTCGGCGATATGCTGGCGACGTGGAGAGGCAGCAGGGCGTGAACATGGCGGATGCT GCCGCTGCTACGGTTGCTACGCTCGAGGAGAATGGCTTCATCGTCTCGACCTTGAGCCATGCTGGCCATTGCAGT CGTGGTCGGATAAGCGAGCTTTACCATTTTGACGCAAAAGCCGATGTCTTCCCTGGCTACGTGCGTGAGGCGCAT CCGACGCTGGCGGCCAAGATGTCGTGCGTTCATACGGGCTACTTCTTCACCAGCTTTGCTCTTTTGCCGCGCTCG TACTTTGCCAAGACGACCGACGGCACTATCGAGATGGCCTTTCCCACGTCGGCATCCAAGCCGGTACCTCATCTG GACCCCGTCGGCGACATGGGAAACTTCGTCTACGCCGTCAGACAGATGCCGCCCGGACGCGCCTACATGGCAGCC GGTACCACCTGTCCCTGGCCCGACTTCCTATCGACATGGGGACGCGTAGCCGGCTACCGAGTATGCTATCGCGAG GTCTCTTCCGAGGAGATGGTGCAGGCGACGCCGGACGCCGAAATGGGCCTCGAGGTCGCCCTCATGTTTGCCTAT TCGTCTGATCCGGGCTACGACGGGGGCATGGCGCTGCTGACGGCTGACGATATCCGAGCGGTGAGTGGAAGGCCC CCCTCCCCCACCCCCAGC |
Transcript | >Ophio5|3695 ATGTCCTCGTCGCCAAGATTGATGGACGCCGCCAAGTTTGTCTGCGTCGTCGGCGCTACCGGCAACCAAGGCGGC TCCGTCGCCCGACGCTTCCTCCACGCCGGCTTCCGAGTACGGGCCTTGACACGGAAGCCATCTTCGGCCTCGGCC TCGGCCCTCGCCGCGCTGGGGGCCGACATAGTCGAGGCCGACCTGGACGACGCGGGCAGTCTTCATCGGGCATTT GCGGGCGCAGCCATCATCTTCACCGTCACCAATTACTGGGAGCCCTTCTTCCGCGACGATTGTCGCGATGAGGCG CGGGCCCGAGGCGTTTCGTGTCGGCGATATGCTGGCGACGTGGAGAGGCAGCAGGGCGTGAACATGGCGGATGCT GCCGCTGCTACGGTTGCTACGCTCGAGGAGAATGGCTTCATCGTCTCGACCTTGAGCCATGCTGGCCATTGCAGT CGTGGTCGGATAAGCGAGCTTTACCATTTTGACGCAAAAGCCGATGTCTTCCCTGGCTACGTGCGTGAGGCGCAT CCGACGCTGGCGGCCAAGATGTCGTGCGTTCATACGGGCTACTTCTTCACCAGCTTTGCTCTTTTGCCGCGCTCG TACTTTGCCAAGACGACCGACGGCACTATCGAGATGGCCTTTCCCACGTCGGCATCCAAGCCGGTACCTCATCTG GACCCCGTCGGCGACATGGGAAACTTCGTCTACGCCGTCAGACAGATGCCGCCCGGACGCGCCTACATGGCAGCC GGTACCACCTGTCCCTGGCCCGACTTCCTATCGACATGGGGACGCGTAGCCGGCTACCGAGTATGCTATCGCGAG GTCTCTTCCGAGGAGATGGTGCAGGCGACGCCGGACGCCGAAATGGGCCTCGAGGTCGCCCTCATGTTTGCCTAT TCGTCTGATCCGGGCTACGACGGGGGCATGGCGCTGCTGACGGCTGACGATATCCGAGCGGTGAGTGGAAGGCCC CCCTCCCCCACCCCCAGCTGA |
Gene | >Ophio5|3695 ATGTCCTCGTCGCCAAGATTGATGGACGCCGCCAAGTTTGTCTGCGTCGTCGGCGCTACCGGCAACCAAGGCGGC TCCGTCGCCCGACGCTTCCTCCACGCCGGCTTCCGAGTACGGGCCTTGACACGGAAGCCATCTTCGGCCTCGGCC TCGGCCCTCGCCGCGCTGGGGGCCGACATAGTCGAGGCCGACCTGGACGACGCGGGCAGTCTTCATCGGGCATTT GCGGGCGCAGCCATCATCTTCACCGTCACCAATTACTGGGAGCCCTTCTTCCGCGACGATTGTCGCGATGAGGCG CGGGCCCGAGGCGTTTCGTGTCGGCGATATGCTGGCGACGTGGAGAGGCAGCAGGGCGTGAACATGGCGGATGCT GCCGCTGCTACGGTTGCTACGCTCGAGGAGAATGGCTTCATCGTCTCGACCTTGAGCCATGCTGGCCATTGCAGT CGTGGTCGGATAAGCGAGCTTTACCATTTTGACGCAAAAGCCGATGTCTTCCCTGGCTACGTGCGTGAGGCGCAT CCGACGCTGGCGGCCAAGATGTCGTGCGTTCATACGGGCTACTTCTTCACCAGCTTTGCTCTTTTGCCGCGCTCG TACTTTGCCAAGGTGAGTCGATTTCGTCTGCCCATCCAAACCCATTCTCATCTCATCTGCCCGATCTGTTGCGAA ACCTCGCAAGACGACCGACGGCACTATCGAGATGGCCTTTCCCACGTCGGCATCCAAGCCGGTACCTCATCTGGA CCCCGTCGGCGACATGGGAAACTTCGTCTACGCCGTCAGACAGATGCCGCCCGGACGCGCCTACATGGCAGCCGG TACCACCTGTCCCTGGCCCGACTTCCTATCGACATGGGGACGCGTAGCCGGCTACCGAGTATGCTATCGCGAGGT CTCTTCCGAGGAGATGGTGCAGGCGACGCCGGACGCCGAAATGGGCCTCGAGGTCGCCCTCATGTTTGCCTATTC GTCTGATCCGGGCTACGACGGGGGCATGGCGCTGCTGACGGCTGACGATATCCGAGCGGTGAGTGGAAGGCCCCC CTCCCCCACCCCCAGCTGA |