Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3694
Gene name
Locationscaffold_291:7248..9450
Strand-
Gene length (bp)2202
Transcript length (bp)2085
Coding sequence length (bp)2082
Protein length (aa) 694

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03828 PAP_assoc Cid1 family poly A polymerase 2.5E-13 559 616
PF01909 NTP_transf_2 Nucleotidyltransferase domain 3.1E-06 395 486

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q68ED3|PAPD5_MOUSE Non-canonical poly(A) RNA polymerase PAPD5 OS=Mus musculus GN=Papd5 PE=1 SV=2 347 658 2.0E-47
sp|Q8NDF8|PAPD5_HUMAN Non-canonical poly(A) RNA polymerase PAPD5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2 347 658 3.0E-47
sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1 339 673 7.0E-45
sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2 355 671 2.0E-44
sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5 PE=3 SV=1 355 673 2.0E-43
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Swissprot ID Swissprot Description Start End E-value
sp|Q68ED3|PAPD5_MOUSE Non-canonical poly(A) RNA polymerase PAPD5 OS=Mus musculus GN=Papd5 PE=1 SV=2 347 658 2.0E-47
sp|Q8NDF8|PAPD5_HUMAN Non-canonical poly(A) RNA polymerase PAPD5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2 347 658 3.0E-47
sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1 339 673 7.0E-45
sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2 355 671 2.0E-44
sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5 PE=3 SV=1 355 673 2.0E-43
sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid14 PE=1 SV=2 338 686 4.0E-43
sp|Q5XG87|PAPD7_HUMAN Non-canonical poly(A) RNA polymerase PAPD7 OS=Homo sapiens GN=PAPD7 PE=1 SV=3 355 661 1.0E-42
sp|Q6PB75|PAPD7_MOUSE Non-canonical poly(A) RNA polymerase PAPD7 OS=Mus musculus GN=Papd7 PE=2 SV=2 398 661 8.0E-38
sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4 PE=1 SV=1 355 660 2.0E-36
sp|Q5XET5|HESO1_ARATH Protein HESO1 OS=Arabidopsis thaliana GN=HESO1 PE=1 SV=1 359 547 6.0E-12
sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid12 PE=1 SV=1 359 632 4.0E-11
sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid11 PE=3 SV=1 348 666 9.0E-10
sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2 356 594 2.0E-09
sp|O64642|URT1_ARATH UTP:RNA uridylyltransferase 1 OS=Arabidopsis thaliana GN=URT1 PE=1 SV=2 354 547 7.0E-08
sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1 SV=1 244 583 4.0E-07
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GO

GO Term Description Terminal node
GO:0016779 nucleotidyltransferase activity Yes
GO:0016772 transferase activity, transferring phosphorus-containing groups No
GO:0003824 catalytic activity No
GO:0016740 transferase activity No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3717 0.882 0.0969 0.0102 0.1234 0.0069 0.0251 0.0136 0.0035 0.007

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 28.23 15.02 41.45
CcL In ants, during behavior modification 46.44 23.71 69.18
CcD In ants, recently dead 55.71 30.30 81.13

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.027600 yes
SC16a CcD 0.001647 yes
CcL CcD 0.474334 no

Orthologs

Orthofinder run ID4
Orthogroup3504
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1281
Ophiocordyceps australis map64 (Brazil) OphauB2|4572
Ophiocordyceps camponoti-floridani Ophcf2|01660
Ophiocordyceps camponoti-rufipedis Ophun1|201
Ophiocordyceps kimflemingae Ophio5|3694 (this protein)
Ophiocordyceps subramaniannii Hirsu2|6706

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3694
MSRNDHRSRRDRDRDRDRERDRDRERDRDRDSEYDRYRRRSPPQYDSWRPPAPRHDASYAHGSNSYRPRPPQSSF
DFRVEKPPGIGPLPPPGPDRRSDSSRRRPPRHPARPRWQPTHPSERALVSGTAFNAPGLRISDATAANKFRNLDD
LSDDDEVAMEMSSSPSSQAGSDKNPPAKRPRTGTAAVQSDAVEAVPKWSNPDPYTALPCPDDTTTRPKRDVVKLI
RKARVEEFKPNTDTPPAAEDFISFDLSSDGEGDGKKKATNAPVSFQLPPRPPPPWRSLALDLDDGSGDLGSRKRT
VDDEIKPPNYGQLRKADLRPSRGMLLPEWRPVKGEDQCPWASVGLLNGDDVTVRLHKELMEFYEFVRPREFEQKI
RTRLVENLSAALRHDPTFREGRVKPFGSFVSGLYLPTADMDLVVCSETYLQGGQALYLSRKRWLYRFQHFLSESG
IAQSNTISVIAHARVPLVKFVDRLTGLKVDVSFENLGGVHAVDTFLEWKRDFPEMPVLVTVIKHFLLMRGLNEPV
NGGIGGFSVICLVVSMLQLMTPLQSKDDASHHHLGDLLLHFFELYGRRFQYRTVAISLTRPIGYIKKSEVARVTY
KNPNRLSIIDPNNPSNDISGGSSNTTAILSRFHDAYLDLRKRMSDVAKQADKGRILDVILEGNYSSFKKQRDYLK
HVYEQTMGPCEDQDEKHSM
Coding >Ophio5|3694
ATGTCGCGCAACGATCATCGCTCTCGGCGAGACCGCGACCGTGACCGCGATCGTGAACGTGACCGCGATCGTGAA
CGCGACCGCGACCGGGACAGTGAATACGACCGCTACCGTCGTCGCTCGCCGCCGCAGTACGACAGCTGGCGCCCC
CCCGCTCCCCGCCACGACGCGTCGTACGCCCACGGCTCCAACTCGTACAGGCCTCGGCCGCCGCAGAGCAGCTTC
GACTTTCGCGTCGAGAAGCCACCCGGTATCGGCCCTCTGCCCCCGCCGGGCCCTGACCGTCGCTCGGATTCCAGC
CGTCGTCGCCCACCGCGCCATCCTGCTCGTCCGCGTTGGCAGCCTACTCATCCCTCAGAGCGCGCCCTCGTTTCC
GGCACCGCCTTCAACGCTCCTGGTCTGCGTATCAGTGACGCTACCGCCGCCAACAAGTTTCGCAATCTTGATGAC
CTGTCCGACGACGACGAGGTCGCCATGGAAATGTCGTCGTCGCCGTCGTCGCAGGCCGGCTCCGACAAGAATCCC
CCGGCCAAGCGTCCCCGCACCGGCACCGCGGCGGTCCAGTCTGACGCTGTCGAGGCCGTTCCTAAGTGGTCTAAC
CCTGACCCTTACACCGCCCTGCCCTGCCCCGATGATACGACGACGCGCCCCAAGCGCGACGTCGTAAAACTCATC
CGCAAGGCTCGCGTGGAAGAGTTCAAGCCCAACACCGACACCCCTCCGGCCGCCGAGGATTTCATCTCATTCGAC
CTCAGCAGTGACGGGGAGGGAGACGGAAAGAAAAAGGCCACCAATGCTCCCGTCTCCTTTCAGCTCCCCCCACGC
CCGCCTCCGCCTTGGCGCTCCCTTGCCCTTGACCTCGACGACGGCTCAGGGGACCTCGGCTCGCGTAAGAGGACC
GTCGACGATGAGATTAAGCCTCCCAACTACGGCCAACTCAGGAAAGCCGACCTCAGGCCGTCAAGGGGAATGCTA
CTGCCCGAGTGGCGGCCCGTCAAGGGCGAGGACCAGTGTCCTTGGGCAAGTGTCGGGCTCCTCAACGGTGACGAT
GTGACAGTCCGACTGCACAAGGAGTTGATGGAATTCTACGAATTTGTCAGGCCGAGAGAGTTTGAGCAGAAAATC
AGGACCAGACTCGTCGAGAACCTGTCTGCCGCTTTGAGGCACGACCCTACTTTTCGCGAAGGTCGCGTCAAGCCC
TTTGGCTCCTTTGTGTCTGGTCTCTATCTCCCGACGGCGGATATGGACCTCGTCGTTTGCTCCGAGACCTACTTG
CAGGGGGGACAAGCGCTTTACCTCTCCAGGAAGAGGTGGCTTTACAGGTTTCAGCATTTTCTAAGCGAGTCCGGC
ATTGCCCAGAGCAACACCATCTCAGTCATCGCGCACGCTCGCGTCCCCCTGGTCAAGTTCGTCGACAGACTTACC
GGTCTCAAGGTCGACGTGTCGTTTGAGAACTTGGGAGGCGTGCATGCGGTCGACACCTTTTTGGAGTGGAAGCGT
GACTTTCCTGAGATGCCCGTCCTCGTTACCGTCATCAAGCATTTCCTCCTGATGCGCGGCCTCAATGAGCCCGTC
AACGGCGGCATCGGCGGCTTCTCCGTCATCTGCCTCGTCGTCAGCATGCTGCAGTTAATGACACCGCTCCAGAGC
AAGGATGACGCCAGCCACCACCATCTCGGCGATCTGCTGCTGCACTTCTTTGAGCTCTATGGCCGTCGTTTCCAG
TACCGCACCGTCGCCATCTCACTGACGCGTCCCATCGGATACATTAAAAAGTCTGAAGTGGCGAGAGTAACATAC
AAGAACCCCAATCGCCTCTCTATCATTGACCCCAACAACCCATCCAACGACATCTCTGGCGGTTCGTCCAACACG
ACGGCCATCTTGAGCCGCTTCCACGATGCCTACCTTGACCTGCGCAAGAGGATGAGTGACGTGGCGAAGCAAGCT
GACAAGGGACGCATTCTCGACGTCATCCTCGAGGGCAACTACTCGTCTTTCAAGAAGCAGCGAGACTACCTGAAG
CACGTTTACGAACAGACGATGGGACCCTGCGAGGACCAGGACGAGAAGCACAGCATG
Transcript >Ophio5|3694
ATGTCGCGCAACGATCATCGCTCTCGGCGAGACCGCGACCGTGACCGCGATCGTGAACGTGACCGCGATCGTGAA
CGCGACCGCGACCGGGACAGTGAATACGACCGCTACCGTCGTCGCTCGCCGCCGCAGTACGACAGCTGGCGCCCC
CCCGCTCCCCGCCACGACGCGTCGTACGCCCACGGCTCCAACTCGTACAGGCCTCGGCCGCCGCAGAGCAGCTTC
GACTTTCGCGTCGAGAAGCCACCCGGTATCGGCCCTCTGCCCCCGCCGGGCCCTGACCGTCGCTCGGATTCCAGC
CGTCGTCGCCCACCGCGCCATCCTGCTCGTCCGCGTTGGCAGCCTACTCATCCCTCAGAGCGCGCCCTCGTTTCC
GGCACCGCCTTCAACGCTCCTGGTCTGCGTATCAGTGACGCTACCGCCGCCAACAAGTTTCGCAATCTTGATGAC
CTGTCCGACGACGACGAGGTCGCCATGGAAATGTCGTCGTCGCCGTCGTCGCAGGCCGGCTCCGACAAGAATCCC
CCGGCCAAGCGTCCCCGCACCGGCACCGCGGCGGTCCAGTCTGACGCTGTCGAGGCCGTTCCTAAGTGGTCTAAC
CCTGACCCTTACACCGCCCTGCCCTGCCCCGATGATACGACGACGCGCCCCAAGCGCGACGTCGTAAAACTCATC
CGCAAGGCTCGCGTGGAAGAGTTCAAGCCCAACACCGACACCCCTCCGGCCGCCGAGGATTTCATCTCATTCGAC
CTCAGCAGTGACGGGGAGGGAGACGGAAAGAAAAAGGCCACCAATGCTCCCGTCTCCTTTCAGCTCCCCCCACGC
CCGCCTCCGCCTTGGCGCTCCCTTGCCCTTGACCTCGACGACGGCTCAGGGGACCTCGGCTCGCGTAAGAGGACC
GTCGACGATGAGATTAAGCCTCCCAACTACGGCCAACTCAGGAAAGCCGACCTCAGGCCGTCAAGGGGAATGCTA
CTGCCCGAGTGGCGGCCCGTCAAGGGCGAGGACCAGTGTCCTTGGGCAAGTGTCGGGCTCCTCAACGGTGACGAT
GTGACAGTCCGACTGCACAAGGAGTTGATGGAATTCTACGAATTTGTCAGGCCGAGAGAGTTTGAGCAGAAAATC
AGGACCAGACTCGTCGAGAACCTGTCTGCCGCTTTGAGGCACGACCCTACTTTTCGCGAAGGTCGCGTCAAGCCC
TTTGGCTCCTTTGTGTCTGGTCTCTATCTCCCGACGGCGGATATGGACCTCGTCGTTTGCTCCGAGACCTACTTG
CAGGGGGGACAAGCGCTTTACCTCTCCAGGAAGAGGTGGCTTTACAGGTTTCAGCATTTTCTAAGCGAGTCCGGC
ATTGCCCAGAGCAACACCATCTCAGTCATCGCGCACGCTCGCGTCCCCCTGGTCAAGTTCGTCGACAGACTTACC
GGTCTCAAGGTCGACGTGTCGTTTGAGAACTTGGGAGGCGTGCATGCGGTCGACACCTTTTTGGAGTGGAAGCGT
GACTTTCCTGAGATGCCCGTCCTCGTTACCGTCATCAAGCATTTCCTCCTGATGCGCGGCCTCAATGAGCCCGTC
AACGGCGGCATCGGCGGCTTCTCCGTCATCTGCCTCGTCGTCAGCATGCTGCAGTTAATGACACCGCTCCAGAGC
AAGGATGACGCCAGCCACCACCATCTCGGCGATCTGCTGCTGCACTTCTTTGAGCTCTATGGCCGTCGTTTCCAG
TACCGCACCGTCGCCATCTCACTGACGCGTCCCATCGGATACATTAAAAAGTCTGAAGTGGCGAGAGTAACATAC
AAGAACCCCAATCGCCTCTCTATCATTGACCCCAACAACCCATCCAACGACATCTCTGGCGGTTCGTCCAACACG
ACGGCCATCTTGAGCCGCTTCCACGATGCCTACCTTGACCTGCGCAAGAGGATGAGTGACGTGGCGAAGCAAGCT
GACAAGGGACGCATTCTCGACGTCATCCTCGAGGGCAACTACTCGTCTTTCAAGAAGCAGCGAGACTACCTGAAG
CACGTTTACGAACAGACGATGGGACCCTGCGAGGACCAGGACGAGAAGCACAGCATGTAA
Gene >Ophio5|3694
ATGTCGCGCAACGATCATCGCTCTCGGCGAGACCGCGACCGTGACCGCGATCGTGAACGTGACCGCGATCGTGAA
CGCGACCGCGACCGGGACAGTGAATACGACCGCTACCGTCGTCGCTCGCCGCCGCAGTACGACAGCTGGCGCCCC
CCCGCTCCCCGCCACGACGCGTCGTACGCCCACGGCTCCAACTCGTACAGGCCTCGGCCGCCGCAGAGCAGCTTC
GACTTTCGCGTCGAGAAGCCACCCGGTATCGGCCCTCTGCCCCCGCCGGGCCCTGACCGTCGCTCGGATTCCAGC
CGTCGTCGCCCACCGCGCCATCCTGCTCGTCCGCGTTGGCAGCCTACTCATCCCTCAGAGCGCGCCCTCGTTTCC
GGCACCGCCTTCAACGCTCCTGGTCTGCGTATCAGTGACGCTACCGCCGCCAACAAGTTTCGCAATCTTGATGAC
CTGTCCGACGACGACGAGGTCGCCATGGAAATGTCGTCGTCGCCGTCGTCGCAGGCCGGCTCCGACAAGAATCCC
CCGGCCAAGCGTCCCCGCACCGGCACCGCGGCGGTCCAGTCTGACGCTGTCGAGGCCGTTCCTAAGTGGTCTAAC
CCTGACCCTTACACCGCCCTGCCCTGCCCCGATGATACGACGACGCGCCCCAAGCGCGACGTCGTAAAACTCATC
CGCAAGGCTCGCGTGGAAGAGTTCAAGCCCAACACCGACACCCCTCCGGCCGCCGAGGATTTCATCTCATTCGAC
CTCAGCAGTGACGGGGAGGGAGACGGAAAGAAAAAGGCCACCAATGCTCCCGTCTCCTTTCAGCTCCCCCCACGC
CCGCCTCCGCCTTGGCGCTCCCTTGCCCTTGACCTCGACGACGGCTCAGGGGACCTCGGCTCGCGTAAGAGGACC
GTCGACGATGAGATTAAGCCTCCCAACTACGGCCAACTCAGGAAAGCCGACCTCAGGCCGTCAAGGGGAATGCTA
CTGCCCGAGTGGCGGCCCGTCAAGGGCGAGGACCAGTGTCCTTGGGCAAGTGTCGGGCTCCTCAACGGTGACGAT
GTGACAGTCCGGCAAGTAGTCCATTTCTTGCATCTTGGCTCACCCTTATTAACCCAAGGTAGAGACAGACTGCAC
AAGGAGTTGATGGAATTCTACGAATTTGTCAGGCCGAGAGAGTTTGAGCAGAAAATCAGGACCAGACTCGTCGAG
AACCTGTCTGCCGCTTTGAGGCACGACCCTACTTTTCGCGAAGGTCGCGTCAAGCCCTTTGGCTCCTTTGTGTCT
GGTCTCTATCTCCCGACGGCGGATATGGACCTCGTCGTTTGCTCCGAGACCTACTTGCAGGGGGGACAAGCGCTT
TACCTCTCCAGGAAGAGGTGGCTTTACAGGTTTCAGCATTTTCTAAGCGAGTCCGGCATTGCCCAGAGCAACACC
ATCTCAGTCATCGCGCACGCTCGCGTCCCCCTGGTCAAGTTCGTCGACAGACTTACCGGTCTCAAGGTCGACGTG
TCGTTTGAGAACTTGGGAGGCGTGCATGCGGTCGACACCTTTTTGGAGTGGAAGCGTGACTTTCCTGAGATGCCC
GTCCTCGTTACCGTCATCAAGCATTTCCTCCTGATGCGCGGCCTCAATGAGCCCGTCAACGGCGGCATCGGCGGC
TTCTCCGTCATCTGCCTCGTCGTCAGCATGCTGCAGTTAATGACACCGCTCCAGAGCAAGGATGACGCCAGCCAC
CACCATCTCGGCGATCTGCTGCTGCACTTCTTTGAGCTCTATGGCCGTCGTTTCCAGTACCGCACCGTCGCCATC
TCACTGACGCGTCCCATCGGATACATTAAAAAGGTTCGCCGGGGCCTCTTGTCCGGCGCTGTGCTTCCTAACGTA
CTGACGAATCATCGACAGTCTGAAGTGGCGAGAGTAACATACAAGAACCCCAATCGCCTCTCTATCATTGACCCC
AACAACCCATCCAACGACATCTCTGGCGGTTCGTCCAACACGACGGCCATCTTGAGCCGCTTCCACGATGCCTAC
CTTGACCTGCGCAAGAGGATGAGTGACGTGGCGAAGCAAGCTGACAAGGGACGCATTCTCGACGTCATCCTCGAG
GGCAACTACTCGTCTTTCAAGAAGCAGCGAGACTACCTGAAGCACGTTTACGAACAGACGATGGGACCCTGCGAG
GACCAGGACGAGAAGCACAGCATGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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