Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3694
Gene name
Locationscaffold_291:7248..9450
Strand-
Gene length (bp)2202
Transcript length (bp)2085
Coding sequence length (bp)2082
Protein length (aa) 694

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03828 PAP_assoc Cid1 family poly A polymerase 2.5E-13 559 616
PF01909 NTP_transf_2 Nucleotidyltransferase domain 3.1E-06 395 486

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q68ED3|PAPD5_MOUSE Non-canonical poly(A) RNA polymerase PAPD5 OS=Mus musculus GN=Papd5 PE=1 SV=2 347 658 2.0E-47
sp|Q8NDF8|PAPD5_HUMAN Non-canonical poly(A) RNA polymerase PAPD5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2 347 658 3.0E-47
sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1 339 673 7.0E-45
sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2 355 671 2.0E-44
sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5 PE=3 SV=1 355 673 2.0E-43
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Swissprot ID Swissprot Description Start End E-value
sp|Q68ED3|PAPD5_MOUSE Non-canonical poly(A) RNA polymerase PAPD5 OS=Mus musculus GN=Papd5 PE=1 SV=2 347 658 2.0E-47
sp|Q8NDF8|PAPD5_HUMAN Non-canonical poly(A) RNA polymerase PAPD5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2 347 658 3.0E-47
sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1 339 673 7.0E-45
sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2 355 671 2.0E-44
sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5 PE=3 SV=1 355 673 2.0E-43
sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid14 PE=1 SV=2 338 686 4.0E-43
sp|Q5XG87|PAPD7_HUMAN Non-canonical poly(A) RNA polymerase PAPD7 OS=Homo sapiens GN=PAPD7 PE=1 SV=3 355 661 1.0E-42
sp|Q6PB75|PAPD7_MOUSE Non-canonical poly(A) RNA polymerase PAPD7 OS=Mus musculus GN=Papd7 PE=2 SV=2 398 661 8.0E-38
sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4 PE=1 SV=1 355 660 2.0E-36
sp|Q5XET5|HESO1_ARATH Protein HESO1 OS=Arabidopsis thaliana GN=HESO1 PE=1 SV=1 359 547 6.0E-12
sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid12 PE=1 SV=1 359 632 4.0E-11
sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid11 PE=3 SV=1 348 666 9.0E-10
sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2 356 594 2.0E-09
sp|O64642|URT1_ARATH UTP:RNA uridylyltransferase 1 OS=Arabidopsis thaliana GN=URT1 PE=1 SV=2 354 547 7.0E-08
sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1 SV=1 244 583 4.0E-07
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GO

GO Term Description Terminal node
GO:0016779 nucleotidyltransferase activity Yes
GO:0016772 transferase activity, transferring phosphorus-containing groups No
GO:0003824 catalytic activity No
GO:0016740 transferase activity No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 36 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3694
MSRNDHRSRRDRDRDRDRERDRDRERDRDRDSEYDRYRRRSPPQYDSWRPPAPRHDASYAHGSNSYRPRPPQSSF
DFRVEKPPGIGPLPPPGPDRRSDSSRRRPPRHPARPRWQPTHPSERALVSGTAFNAPGLRISDATAANKFRNLDD
LSDDDEVAMEMSSSPSSQAGSDKNPPAKRPRTGTAAVQSDAVEAVPKWSNPDPYTALPCPDDTTTRPKRDVVKLI
RKARVEEFKPNTDTPPAAEDFISFDLSSDGEGDGKKKATNAPVSFQLPPRPPPPWRSLALDLDDGSGDLGSRKRT
VDDEIKPPNYGQLRKADLRPSRGMLLPEWRPVKGEDQCPWASVGLLNGDDVTVRLHKELMEFYEFVRPREFEQKI
RTRLVENLSAALRHDPTFREGRVKPFGSFVSGLYLPTADMDLVVCSETYLQGGQALYLSRKRWLYRFQHFLSESG
IAQSNTISVIAHARVPLVKFVDRLTGLKVDVSFENLGGVHAVDTFLEWKRDFPEMPVLVTVIKHFLLMRGLNEPV
NGGIGGFSVICLVVSMLQLMTPLQSKDDASHHHLGDLLLHFFELYGRRFQYRTVAISLTRPIGYIKKSEVARVTY
KNPNRLSIIDPNNPSNDISGGSSNTTAILSRFHDAYLDLRKRMSDVAKQADKGRILDVILEGNYSSFKKQRDYLK
HVYEQTMGPCEDQDEKHSM
Coding >Ophio5|3694
ATGTCGCGCAACGATCATCGCTCTCGGCGAGACCGCGACCGTGACCGCGATCGTGAACGTGACCGCGATCGTGAA
CGCGACCGCGACCGGGACAGTGAATACGACCGCTACCGTCGTCGCTCGCCGCCGCAGTACGACAGCTGGCGCCCC
CCCGCTCCCCGCCACGACGCGTCGTACGCCCACGGCTCCAACTCGTACAGGCCTCGGCCGCCGCAGAGCAGCTTC
GACTTTCGCGTCGAGAAGCCACCCGGTATCGGCCCTCTGCCCCCGCCGGGCCCTGACCGTCGCTCGGATTCCAGC
CGTCGTCGCCCACCGCGCCATCCTGCTCGTCCGCGTTGGCAGCCTACTCATCCCTCAGAGCGCGCCCTCGTTTCC
GGCACCGCCTTCAACGCTCCTGGTCTGCGTATCAGTGACGCTACCGCCGCCAACAAGTTTCGCAATCTTGATGAC
CTGTCCGACGACGACGAGGTCGCCATGGAAATGTCGTCGTCGCCGTCGTCGCAGGCCGGCTCCGACAAGAATCCC
CCGGCCAAGCGTCCCCGCACCGGCACCGCGGCGGTCCAGTCTGACGCTGTCGAGGCCGTTCCTAAGTGGTCTAAC
CCTGACCCTTACACCGCCCTGCCCTGCCCCGATGATACGACGACGCGCCCCAAGCGCGACGTCGTAAAACTCATC
CGCAAGGCTCGCGTGGAAGAGTTCAAGCCCAACACCGACACCCCTCCGGCCGCCGAGGATTTCATCTCATTCGAC
CTCAGCAGTGACGGGGAGGGAGACGGAAAGAAAAAGGCCACCAATGCTCCCGTCTCCTTTCAGCTCCCCCCACGC
CCGCCTCCGCCTTGGCGCTCCCTTGCCCTTGACCTCGACGACGGCTCAGGGGACCTCGGCTCGCGTAAGAGGACC
GTCGACGATGAGATTAAGCCTCCCAACTACGGCCAACTCAGGAAAGCCGACCTCAGGCCGTCAAGGGGAATGCTA
CTGCCCGAGTGGCGGCCCGTCAAGGGCGAGGACCAGTGTCCTTGGGCAAGTGTCGGGCTCCTCAACGGTGACGAT
GTGACAGTCCGACTGCACAAGGAGTTGATGGAATTCTACGAATTTGTCAGGCCGAGAGAGTTTGAGCAGAAAATC
AGGACCAGACTCGTCGAGAACCTGTCTGCCGCTTTGAGGCACGACCCTACTTTTCGCGAAGGTCGCGTCAAGCCC
TTTGGCTCCTTTGTGTCTGGTCTCTATCTCCCGACGGCGGATATGGACCTCGTCGTTTGCTCCGAGACCTACTTG
CAGGGGGGACAAGCGCTTTACCTCTCCAGGAAGAGGTGGCTTTACAGGTTTCAGCATTTTCTAAGCGAGTCCGGC
ATTGCCCAGAGCAACACCATCTCAGTCATCGCGCACGCTCGCGTCCCCCTGGTCAAGTTCGTCGACAGACTTACC
GGTCTCAAGGTCGACGTGTCGTTTGAGAACTTGGGAGGCGTGCATGCGGTCGACACCTTTTTGGAGTGGAAGCGT
GACTTTCCTGAGATGCCCGTCCTCGTTACCGTCATCAAGCATTTCCTCCTGATGCGCGGCCTCAATGAGCCCGTC
AACGGCGGCATCGGCGGCTTCTCCGTCATCTGCCTCGTCGTCAGCATGCTGCAGTTAATGACACCGCTCCAGAGC
AAGGATGACGCCAGCCACCACCATCTCGGCGATCTGCTGCTGCACTTCTTTGAGCTCTATGGCCGTCGTTTCCAG
TACCGCACCGTCGCCATCTCACTGACGCGTCCCATCGGATACATTAAAAAGTCTGAAGTGGCGAGAGTAACATAC
AAGAACCCCAATCGCCTCTCTATCATTGACCCCAACAACCCATCCAACGACATCTCTGGCGGTTCGTCCAACACG
ACGGCCATCTTGAGCCGCTTCCACGATGCCTACCTTGACCTGCGCAAGAGGATGAGTGACGTGGCGAAGCAAGCT
GACAAGGGACGCATTCTCGACGTCATCCTCGAGGGCAACTACTCGTCTTTCAAGAAGCAGCGAGACTACCTGAAG
CACGTTTACGAACAGACGATGGGACCCTGCGAGGACCAGGACGAGAAGCACAGCATG
Transcript >Ophio5|3694
ATGTCGCGCAACGATCATCGCTCTCGGCGAGACCGCGACCGTGACCGCGATCGTGAACGTGACCGCGATCGTGAA
CGCGACCGCGACCGGGACAGTGAATACGACCGCTACCGTCGTCGCTCGCCGCCGCAGTACGACAGCTGGCGCCCC
CCCGCTCCCCGCCACGACGCGTCGTACGCCCACGGCTCCAACTCGTACAGGCCTCGGCCGCCGCAGAGCAGCTTC
GACTTTCGCGTCGAGAAGCCACCCGGTATCGGCCCTCTGCCCCCGCCGGGCCCTGACCGTCGCTCGGATTCCAGC
CGTCGTCGCCCACCGCGCCATCCTGCTCGTCCGCGTTGGCAGCCTACTCATCCCTCAGAGCGCGCCCTCGTTTCC
GGCACCGCCTTCAACGCTCCTGGTCTGCGTATCAGTGACGCTACCGCCGCCAACAAGTTTCGCAATCTTGATGAC
CTGTCCGACGACGACGAGGTCGCCATGGAAATGTCGTCGTCGCCGTCGTCGCAGGCCGGCTCCGACAAGAATCCC
CCGGCCAAGCGTCCCCGCACCGGCACCGCGGCGGTCCAGTCTGACGCTGTCGAGGCCGTTCCTAAGTGGTCTAAC
CCTGACCCTTACACCGCCCTGCCCTGCCCCGATGATACGACGACGCGCCCCAAGCGCGACGTCGTAAAACTCATC
CGCAAGGCTCGCGTGGAAGAGTTCAAGCCCAACACCGACACCCCTCCGGCCGCCGAGGATTTCATCTCATTCGAC
CTCAGCAGTGACGGGGAGGGAGACGGAAAGAAAAAGGCCACCAATGCTCCCGTCTCCTTTCAGCTCCCCCCACGC
CCGCCTCCGCCTTGGCGCTCCCTTGCCCTTGACCTCGACGACGGCTCAGGGGACCTCGGCTCGCGTAAGAGGACC
GTCGACGATGAGATTAAGCCTCCCAACTACGGCCAACTCAGGAAAGCCGACCTCAGGCCGTCAAGGGGAATGCTA
CTGCCCGAGTGGCGGCCCGTCAAGGGCGAGGACCAGTGTCCTTGGGCAAGTGTCGGGCTCCTCAACGGTGACGAT
GTGACAGTCCGACTGCACAAGGAGTTGATGGAATTCTACGAATTTGTCAGGCCGAGAGAGTTTGAGCAGAAAATC
AGGACCAGACTCGTCGAGAACCTGTCTGCCGCTTTGAGGCACGACCCTACTTTTCGCGAAGGTCGCGTCAAGCCC
TTTGGCTCCTTTGTGTCTGGTCTCTATCTCCCGACGGCGGATATGGACCTCGTCGTTTGCTCCGAGACCTACTTG
CAGGGGGGACAAGCGCTTTACCTCTCCAGGAAGAGGTGGCTTTACAGGTTTCAGCATTTTCTAAGCGAGTCCGGC
ATTGCCCAGAGCAACACCATCTCAGTCATCGCGCACGCTCGCGTCCCCCTGGTCAAGTTCGTCGACAGACTTACC
GGTCTCAAGGTCGACGTGTCGTTTGAGAACTTGGGAGGCGTGCATGCGGTCGACACCTTTTTGGAGTGGAAGCGT
GACTTTCCTGAGATGCCCGTCCTCGTTACCGTCATCAAGCATTTCCTCCTGATGCGCGGCCTCAATGAGCCCGTC
AACGGCGGCATCGGCGGCTTCTCCGTCATCTGCCTCGTCGTCAGCATGCTGCAGTTAATGACACCGCTCCAGAGC
AAGGATGACGCCAGCCACCACCATCTCGGCGATCTGCTGCTGCACTTCTTTGAGCTCTATGGCCGTCGTTTCCAG
TACCGCACCGTCGCCATCTCACTGACGCGTCCCATCGGATACATTAAAAAGTCTGAAGTGGCGAGAGTAACATAC
AAGAACCCCAATCGCCTCTCTATCATTGACCCCAACAACCCATCCAACGACATCTCTGGCGGTTCGTCCAACACG
ACGGCCATCTTGAGCCGCTTCCACGATGCCTACCTTGACCTGCGCAAGAGGATGAGTGACGTGGCGAAGCAAGCT
GACAAGGGACGCATTCTCGACGTCATCCTCGAGGGCAACTACTCGTCTTTCAAGAAGCAGCGAGACTACCTGAAG
CACGTTTACGAACAGACGATGGGACCCTGCGAGGACCAGGACGAGAAGCACAGCATGTAA
Gene >Ophio5|3694
ATGTCGCGCAACGATCATCGCTCTCGGCGAGACCGCGACCGTGACCGCGATCGTGAACGTGACCGCGATCGTGAA
CGCGACCGCGACCGGGACAGTGAATACGACCGCTACCGTCGTCGCTCGCCGCCGCAGTACGACAGCTGGCGCCCC
CCCGCTCCCCGCCACGACGCGTCGTACGCCCACGGCTCCAACTCGTACAGGCCTCGGCCGCCGCAGAGCAGCTTC
GACTTTCGCGTCGAGAAGCCACCCGGTATCGGCCCTCTGCCCCCGCCGGGCCCTGACCGTCGCTCGGATTCCAGC
CGTCGTCGCCCACCGCGCCATCCTGCTCGTCCGCGTTGGCAGCCTACTCATCCCTCAGAGCGCGCCCTCGTTTCC
GGCACCGCCTTCAACGCTCCTGGTCTGCGTATCAGTGACGCTACCGCCGCCAACAAGTTTCGCAATCTTGATGAC
CTGTCCGACGACGACGAGGTCGCCATGGAAATGTCGTCGTCGCCGTCGTCGCAGGCCGGCTCCGACAAGAATCCC
CCGGCCAAGCGTCCCCGCACCGGCACCGCGGCGGTCCAGTCTGACGCTGTCGAGGCCGTTCCTAAGTGGTCTAAC
CCTGACCCTTACACCGCCCTGCCCTGCCCCGATGATACGACGACGCGCCCCAAGCGCGACGTCGTAAAACTCATC
CGCAAGGCTCGCGTGGAAGAGTTCAAGCCCAACACCGACACCCCTCCGGCCGCCGAGGATTTCATCTCATTCGAC
CTCAGCAGTGACGGGGAGGGAGACGGAAAGAAAAAGGCCACCAATGCTCCCGTCTCCTTTCAGCTCCCCCCACGC
CCGCCTCCGCCTTGGCGCTCCCTTGCCCTTGACCTCGACGACGGCTCAGGGGACCTCGGCTCGCGTAAGAGGACC
GTCGACGATGAGATTAAGCCTCCCAACTACGGCCAACTCAGGAAAGCCGACCTCAGGCCGTCAAGGGGAATGCTA
CTGCCCGAGTGGCGGCCCGTCAAGGGCGAGGACCAGTGTCCTTGGGCAAGTGTCGGGCTCCTCAACGGTGACGAT
GTGACAGTCCGGCAAGTAGTCCATTTCTTGCATCTTGGCTCACCCTTATTAACCCAAGGTAGAGACAGACTGCAC
AAGGAGTTGATGGAATTCTACGAATTTGTCAGGCCGAGAGAGTTTGAGCAGAAAATCAGGACCAGACTCGTCGAG
AACCTGTCTGCCGCTTTGAGGCACGACCCTACTTTTCGCGAAGGTCGCGTCAAGCCCTTTGGCTCCTTTGTGTCT
GGTCTCTATCTCCCGACGGCGGATATGGACCTCGTCGTTTGCTCCGAGACCTACTTGCAGGGGGGACAAGCGCTT
TACCTCTCCAGGAAGAGGTGGCTTTACAGGTTTCAGCATTTTCTAAGCGAGTCCGGCATTGCCCAGAGCAACACC
ATCTCAGTCATCGCGCACGCTCGCGTCCCCCTGGTCAAGTTCGTCGACAGACTTACCGGTCTCAAGGTCGACGTG
TCGTTTGAGAACTTGGGAGGCGTGCATGCGGTCGACACCTTTTTGGAGTGGAAGCGTGACTTTCCTGAGATGCCC
GTCCTCGTTACCGTCATCAAGCATTTCCTCCTGATGCGCGGCCTCAATGAGCCCGTCAACGGCGGCATCGGCGGC
TTCTCCGTCATCTGCCTCGTCGTCAGCATGCTGCAGTTAATGACACCGCTCCAGAGCAAGGATGACGCCAGCCAC
CACCATCTCGGCGATCTGCTGCTGCACTTCTTTGAGCTCTATGGCCGTCGTTTCCAGTACCGCACCGTCGCCATC
TCACTGACGCGTCCCATCGGATACATTAAAAAGGTTCGCCGGGGCCTCTTGTCCGGCGCTGTGCTTCCTAACGTA
CTGACGAATCATCGACAGTCTGAAGTGGCGAGAGTAACATACAAGAACCCCAATCGCCTCTCTATCATTGACCCC
AACAACCCATCCAACGACATCTCTGGCGGTTCGTCCAACACGACGGCCATCTTGAGCCGCTTCCACGATGCCTAC
CTTGACCTGCGCAAGAGGATGAGTGACGTGGCGAAGCAAGCTGACAAGGGACGCATTCTCGACGTCATCCTCGAG
GGCAACTACTCGTCTTTCAAGAAGCAGCGAGACTACCTGAAGCACGTTTACGAACAGACGATGGGACCCTGCGAG
GACCAGGACGAGAAGCACAGCATGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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