Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3667
Gene name
Locationscaffold_29:44378..46042
Strand-
Gene length (bp)1664
Transcript length (bp)1497
Coding sequence length (bp)1494
Protein length (aa) 498

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07690 MFS_1 Major Facilitator Superfamily 1.0E-17 85 428
PF05978 UNC-93 Ion channel regulatory protein UNC-93 8.4E-15 75 424

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9URX1|YLX5_SCHPO UNC93-like protein C922.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC922.05c PE=3 SV=1 24 474 3.0E-142
sp|Q8LG53|UN932_ARATH UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2 42 465 3.0E-102
sp|Q56WD3|UN931_ARATH UNC93-like protein 1 OS=Arabidopsis thaliana GN=At1g18000 PE=2 SV=2 42 465 3.0E-102
sp|O14237|YEL4_SCHPO Uncharacterized membrane protein C6F6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.04c PE=4 SV=1 43 485 3.0E-50

GO

GO Term Description Terminal node
GO:0022857 transmembrane transporter activity Yes
GO:0055085 transmembrane transport Yes
GO:0009987 cellular process No
GO:0051234 establishment of localization No
GO:0008150 biological_process No
GO:0005215 transporter activity No
GO:0003674 molecular_function No
GO:0051179 localization No
GO:0006810 transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 52 0.5

Transmembrane Domains

Domain # Start End Length
1 50 72 22
2 85 102 17
3 107 129 22
4 136 158 22
5 173 192 19
6 205 224 19
7 256 278 22
8 299 321 22
9 326 348 22
10 379 401 22
11 440 462 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 17.83 7.92 27.73
CcL In ants, during behavior modification 224.04 22.29 425.78
CcD In ants, recently dead 65.08 35.91 94.25

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.000770 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3667
MDTDKKAHGLAVDETSSTHGHGPRPRGFIYKSFRVFGRQVWYASPKVQLLMVSLVCFLCPGMYNSLTGLGGGGQV
DATAQDHANVALYSTFAVVSFLSGSFANRLGLRLTLSIGGLGYCIYSASFLSYSHTGNVGFVIFAGAFLGLCAGL
LWTAQGAIMMSYPPENSKGRYISCFWIIFNLGAVIGSLIPLAENINKKAGPVTDGTYIAFIILMLLGAGLSLMLC
DADKVIRDDNTKVILMKNPSWSSELKGLYDTLFQEPWILLLFPMFFASNFFYTYQNNDMNAAHFNTRTRALNNLL
YWLAQIFGAILSGHCLDLHYIRRSLRARLAFGFLATLTFVIWGGGWHWQKQQVARAVAESKDYKGLIDWTDGSRF
AEPMVLYFFYGFYDAIWQTSIYWFMGSLSNSGRKAANLAGFYKSIQSFGASIAYYMDGSKKGYDTIFGVTWGLLA
SSLLFALPVILYKIKDHVSVEDDLKFSDETIDDVIVGSGEKTHTRPEV
Coding >Ophio5|3667
ATGGACACCGACAAGAAGGCTCACGGCCTCGCCGTCGATGAAACCTCGTCCACCCATGGCCATGGCCCCCGCCCC
CGTGGCTTCATCTATAAATCGTTCCGCGTTTTTGGCCGTCAGGTTTGGTACGCCTCGCCCAAAGTTCAGCTCTTG
ATGGTCTCGCTCGTCTGCTTTCTCTGTCCCGGCATGTACAACTCTCTCACCGGCCTCGGAGGTGGTGGTCAGGTA
GACGCCACGGCCCAGGATCATGCAAACGTCGCCCTCTACAGCACCTTTGCCGTCGTCAGCTTCTTATCTGGCTCT
TTCGCCAATCGCCTTGGATTGCGCCTCACCCTGTCCATTGGCGGTCTTGGATACTGCATCTATAGCGCCTCGTTC
CTCTCTTACTCCCATACGGGCAATGTTGGCTTCGTCATCTTCGCCGGCGCTTTTCTCGGCCTATGCGCCGGCTTG
CTCTGGACGGCGCAAGGGGCCATCATGATGTCGTACCCGCCTGAGAACAGCAAGGGCCGCTACATCTCGTGCTTC
TGGATCATCTTCAACCTCGGCGCCGTCATCGGCTCACTCATCCCACTCGCCGAAAACATCAACAAAAAGGCCGGA
CCCGTCACCGACGGCACATACATCGCCTTCATCATTCTCATGCTCCTCGGCGCCGGCCTCTCGCTCATGCTTTGC
GACGCCGACAAGGTCATCCGCGACGACAACACCAAAGTCATCCTGATGAAGAACCCGTCCTGGTCGAGCGAGCTC
AAGGGCCTCTATGACACCCTCTTTCAAGAGCCCTGGATCCTCCTCCTCTTCCCCATGTTCTTCGCCTCCAACTTC
TTCTACACCTACCAGAACAATGACATGAACGCGGCTCACTTCAATACCCGCACCCGCGCTCTCAATAATCTGCTC
TACTGGCTCGCCCAGATCTTCGGCGCCATTCTCTCCGGCCACTGCCTTGACTTGCACTACATCCGCCGCAGCCTG
CGCGCCAGGCTCGCTTTTGGCTTCCTCGCCACCCTCACCTTCGTCATCTGGGGGGGCGGATGGCATTGGCAGAAG
CAGCAAGTCGCCCGCGCCGTCGCCGAGAGCAAGGACTACAAAGGCCTCATCGACTGGACCGACGGAAGCCGCTTC
GCCGAGCCCATGGTTCTCTACTTCTTCTACGGCTTCTACGACGCCATCTGGCAGACCTCCATCTACTGGTTCATG
GGATCTCTGTCCAACTCCGGTCGCAAGGCCGCCAATCTCGCAGGCTTCTACAAGTCGATTCAGTCCTTCGGAGCC
AGCATCGCGTACTACATGGATGGCAGCAAAAAGGGGTACGACACCATCTTTGGAGTGACCTGGGGTTTGCTGGCG
AGCTCCTTATTATTTGCCCTTCCTGTCATCCTGTACAAGATCAAGGACCACGTGTCGGTGGAAGATGACCTCAAG
TTCAGCGACGAGACCATTGACGACGTCATCGTTGGGTCTGGGGAGAAGACCCACACGCGCCCGGAGGTC
Transcript >Ophio5|3667
ATGGACACCGACAAGAAGGCTCACGGCCTCGCCGTCGATGAAACCTCGTCCACCCATGGCCATGGCCCCCGCCCC
CGTGGCTTCATCTATAAATCGTTCCGCGTTTTTGGCCGTCAGGTTTGGTACGCCTCGCCCAAAGTTCAGCTCTTG
ATGGTCTCGCTCGTCTGCTTTCTCTGTCCCGGCATGTACAACTCTCTCACCGGCCTCGGAGGTGGTGGTCAGGTA
GACGCCACGGCCCAGGATCATGCAAACGTCGCCCTCTACAGCACCTTTGCCGTCGTCAGCTTCTTATCTGGCTCT
TTCGCCAATCGCCTTGGATTGCGCCTCACCCTGTCCATTGGCGGTCTTGGATACTGCATCTATAGCGCCTCGTTC
CTCTCTTACTCCCATACGGGCAATGTTGGCTTCGTCATCTTCGCCGGCGCTTTTCTCGGCCTATGCGCCGGCTTG
CTCTGGACGGCGCAAGGGGCCATCATGATGTCGTACCCGCCTGAGAACAGCAAGGGCCGCTACATCTCGTGCTTC
TGGATCATCTTCAACCTCGGCGCCGTCATCGGCTCACTCATCCCACTCGCCGAAAACATCAACAAAAAGGCCGGA
CCCGTCACCGACGGCACATACATCGCCTTCATCATTCTCATGCTCCTCGGCGCCGGCCTCTCGCTCATGCTTTGC
GACGCCGACAAGGTCATCCGCGACGACAACACCAAAGTCATCCTGATGAAGAACCCGTCCTGGTCGAGCGAGCTC
AAGGGCCTCTATGACACCCTCTTTCAAGAGCCCTGGATCCTCCTCCTCTTCCCCATGTTCTTCGCCTCCAACTTC
TTCTACACCTACCAGAACAATGACATGAACGCGGCTCACTTCAATACCCGCACCCGCGCTCTCAATAATCTGCTC
TACTGGCTCGCCCAGATCTTCGGCGCCATTCTCTCCGGCCACTGCCTTGACTTGCACTACATCCGCCGCAGCCTG
CGCGCCAGGCTCGCTTTTGGCTTCCTCGCCACCCTCACCTTCGTCATCTGGGGGGGCGGATGGCATTGGCAGAAG
CAGCAAGTCGCCCGCGCCGTCGCCGAGAGCAAGGACTACAAAGGCCTCATCGACTGGACCGACGGAAGCCGCTTC
GCCGAGCCCATGGTTCTCTACTTCTTCTACGGCTTCTACGACGCCATCTGGCAGACCTCCATCTACTGGTTCATG
GGATCTCTGTCCAACTCCGGTCGCAAGGCCGCCAATCTCGCAGGCTTCTACAAGTCGATTCAGTCCTTCGGAGCC
AGCATCGCGTACTACATGGATGGCAGCAAAAAGGGGTACGACACCATCTTTGGAGTGACCTGGGGTTTGCTGGCG
AGCTCCTTATTATTTGCCCTTCCTGTCATCCTGTACAAGATCAAGGACCACGTGTCGGTGGAAGATGACCTCAAG
TTCAGCGACGAGACCATTGACGACGTCATCGTTGGGTCTGGGGAGAAGACCCACACGCGCCCGGAGGTCTGA
Gene >Ophio5|3667
ATGGACACCGACAAGAAGGCTCACGGCCTCGCCGTCGATGAAACCTCGTCCACCCATGGCCATGGCCCCCGCCCC
CGTGGCTTCATCTATAAATCGTTCCGCGTTTTTGGCCGTCAGGTTTGGTACGCCTCGCCCAAAGTTCAGCTCTTG
ATGGTCTCGCTCGTCTGCTTTCTCTGTCCCGGCATGTACAACTCTCTCACCGGCCTCGGAGGTGGTGGTCAGGTA
GACGCCACGGCCCAGGATCATGCAAACGTCGCCCTCTACAGCACCTTTGCCGTCGTCAGCTTCTTATCTGGCTCT
TTCGCCAATCGCCTTGGATTGCGCCTCACCCTGTCCATTGGCGGTCTTGGATACTGCATCTATAGCGCCTCGTTC
CTCTCTTACTCCCATACGGGCAATGTTGGCTTCGTCATCTTCGCCGGCGCTTTTCTCGGCCTATGCGCCGGCTTG
CTCTGGACGGCGCAAGGGGCCATCATGATGTCGTACCCGCCTGAGAACAGCAAGGGCCGCTACATCTCGTGCTTC
TGGATCATCTTCAACCTCGGCGCCGTCATCGGCTCACTCGTCCGTTCGGCCTCGATCCCCTTATTCATCTTCCCG
CCCGCTCTAACGTCGTCCAGATCCCACTCGCCGAAAACATCAACAAAAAGGCCGGACCCGTCACCGACGGCACAT
ACATCGCCTTCATCATTCTCATGCTCCTCGGCGCCGGCCTCTCGCTCATGCTTTGCGACGCCGACAAGGTCATCC
GCGACGACAACACCAAAGTCATCCTGATGAAGAACCCGTCCTGGTCGAGCGAGCTCAAGGGCCTCTATGACACCC
TCTTTCAAGAGCCCTGGATCCTCCTCCTCTTCCCCATGTTCTTCGCCTCCAACTTCTTCTACACCTACCAGAACA
ATGACATGAACGCGGCTCACTTCAATACCCGCACCCGCGCTCTCAATAATCTGCTCTACTGGCTCGCCCAGATCT
TCGGCGCCATTCTCTCCGGCCACTGCCTTGACTTGCACTACATCCGCCGCAGCCTGCGCGCCAGGCTCGCTTTTG
GCTTCCTCGCCACCCTCACCTTCGTCATCTGGGGGGGCGGATGGCATTGGCAGAAGCAGCAAGTCGCCCGCGCCG
TCGCCGAGAGCAAGGACTACAAAGGCCTCATCGACTGGACCGACGGAAGCCGCTTCGCCGAGCCCATGGTTCTCT
ACTTCTTCTACGGCTTCTACGACGCCATCTGGCAGACCTCCATCTACTGGTATGTCTTGCCCTGCTCAAGCGATT
GATATAGGATGTTGACGGAAGTACAGGTTCATGGGATCTCTGTCCAACTCCGGTCGCAAGGCCGCCAATCTCGCA
GGTCAGTCATTGTCTGCCACGAGCAAGACCCTCATGCCGCTGACATTTTCGAACCCGCAGGCTTCTACAAGTCGA
TTCAGTCCTTCGGAGCCAGCATCGCGTACTACATGGATGGCAGCAAAAAGGGGTACGACACCATCTTTGGAGTGA
CCTGGGGTTTGCTGGCGAGCTCCTTATTATTTGCCCTTCCTGTCATCCTGTACAAGATCAAGGACCACGTGTCGG
TGGAAGATGACCTCAAGTTCAGCGACGAGACCATTGACGACGTCATCGTTGGGTCTGGGGAGAAGACCCACACGC
GCCCGGAGGTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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