© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3667 |
| Gene name | |
| Location | scaffold_29:44378..46042 |
| Strand | - |
| Gene length (bp) | 1664 |
| Transcript length (bp) | 1497 |
| Coding sequence length (bp) | 1494 |
| Protein length (aa) | 498 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.0E-17 | 85 | 428 |
| PF05978 | UNC-93 | Ion channel regulatory protein UNC-93 | 8.4E-15 | 75 | 424 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9URX1|YLX5_SCHPO | UNC93-like protein C922.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC922.05c PE=3 SV=1 | 24 | 474 | 3.0E-142 |
| sp|Q8LG53|UN932_ARATH | UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2 | 42 | 465 | 3.0E-102 |
| sp|Q56WD3|UN931_ARATH | UNC93-like protein 1 OS=Arabidopsis thaliana GN=At1g18000 PE=2 SV=2 | 42 | 465 | 3.0E-102 |
| sp|O14237|YEL4_SCHPO | Uncharacterized membrane protein C6F6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.04c PE=4 SV=1 | 43 | 485 | 3.0E-50 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0972 | 0.0926 | 0.0793 | 0.5898 | 0.0483 | 0.0023 | 0.4257 | 0.5735 | 0.5225 | 0.0046 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 72 | 22 |
| 2 | 85 | 102 | 17 |
| 3 | 107 | 129 | 22 |
| 4 | 136 | 158 | 22 |
| 5 | 173 | 192 | 19 |
| 6 | 205 | 224 | 19 |
| 7 | 256 | 278 | 22 |
| 8 | 299 | 321 | 22 |
| 9 | 326 | 348 | 22 |
| 10 | 379 | 401 | 22 |
| 11 | 440 | 462 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 673 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3667 MDTDKKAHGLAVDETSSTHGHGPRPRGFIYKSFRVFGRQVWYASPKVQLLMVSLVCFLCPGMYNSLTGLGGGGQV DATAQDHANVALYSTFAVVSFLSGSFANRLGLRLTLSIGGLGYCIYSASFLSYSHTGNVGFVIFAGAFLGLCAGL LWTAQGAIMMSYPPENSKGRYISCFWIIFNLGAVIGSLIPLAENINKKAGPVTDGTYIAFIILMLLGAGLSLMLC DADKVIRDDNTKVILMKNPSWSSELKGLYDTLFQEPWILLLFPMFFASNFFYTYQNNDMNAAHFNTRTRALNNLL YWLAQIFGAILSGHCLDLHYIRRSLRARLAFGFLATLTFVIWGGGWHWQKQQVARAVAESKDYKGLIDWTDGSRF AEPMVLYFFYGFYDAIWQTSIYWFMGSLSNSGRKAANLAGFYKSIQSFGASIAYYMDGSKKGYDTIFGVTWGLLA SSLLFALPVILYKIKDHVSVEDDLKFSDETIDDVIVGSGEKTHTRPEV |
| Coding | >Ophio5|3667 ATGGACACCGACAAGAAGGCTCACGGCCTCGCCGTCGATGAAACCTCGTCCACCCATGGCCATGGCCCCCGCCCC CGTGGCTTCATCTATAAATCGTTCCGCGTTTTTGGCCGTCAGGTTTGGTACGCCTCGCCCAAAGTTCAGCTCTTG ATGGTCTCGCTCGTCTGCTTTCTCTGTCCCGGCATGTACAACTCTCTCACCGGCCTCGGAGGTGGTGGTCAGGTA GACGCCACGGCCCAGGATCATGCAAACGTCGCCCTCTACAGCACCTTTGCCGTCGTCAGCTTCTTATCTGGCTCT TTCGCCAATCGCCTTGGATTGCGCCTCACCCTGTCCATTGGCGGTCTTGGATACTGCATCTATAGCGCCTCGTTC CTCTCTTACTCCCATACGGGCAATGTTGGCTTCGTCATCTTCGCCGGCGCTTTTCTCGGCCTATGCGCCGGCTTG CTCTGGACGGCGCAAGGGGCCATCATGATGTCGTACCCGCCTGAGAACAGCAAGGGCCGCTACATCTCGTGCTTC TGGATCATCTTCAACCTCGGCGCCGTCATCGGCTCACTCATCCCACTCGCCGAAAACATCAACAAAAAGGCCGGA CCCGTCACCGACGGCACATACATCGCCTTCATCATTCTCATGCTCCTCGGCGCCGGCCTCTCGCTCATGCTTTGC GACGCCGACAAGGTCATCCGCGACGACAACACCAAAGTCATCCTGATGAAGAACCCGTCCTGGTCGAGCGAGCTC AAGGGCCTCTATGACACCCTCTTTCAAGAGCCCTGGATCCTCCTCCTCTTCCCCATGTTCTTCGCCTCCAACTTC TTCTACACCTACCAGAACAATGACATGAACGCGGCTCACTTCAATACCCGCACCCGCGCTCTCAATAATCTGCTC TACTGGCTCGCCCAGATCTTCGGCGCCATTCTCTCCGGCCACTGCCTTGACTTGCACTACATCCGCCGCAGCCTG CGCGCCAGGCTCGCTTTTGGCTTCCTCGCCACCCTCACCTTCGTCATCTGGGGGGGCGGATGGCATTGGCAGAAG CAGCAAGTCGCCCGCGCCGTCGCCGAGAGCAAGGACTACAAAGGCCTCATCGACTGGACCGACGGAAGCCGCTTC GCCGAGCCCATGGTTCTCTACTTCTTCTACGGCTTCTACGACGCCATCTGGCAGACCTCCATCTACTGGTTCATG GGATCTCTGTCCAACTCCGGTCGCAAGGCCGCCAATCTCGCAGGCTTCTACAAGTCGATTCAGTCCTTCGGAGCC AGCATCGCGTACTACATGGATGGCAGCAAAAAGGGGTACGACACCATCTTTGGAGTGACCTGGGGTTTGCTGGCG AGCTCCTTATTATTTGCCCTTCCTGTCATCCTGTACAAGATCAAGGACCACGTGTCGGTGGAAGATGACCTCAAG TTCAGCGACGAGACCATTGACGACGTCATCGTTGGGTCTGGGGAGAAGACCCACACGCGCCCGGAGGTC |
| Transcript | >Ophio5|3667 ATGGACACCGACAAGAAGGCTCACGGCCTCGCCGTCGATGAAACCTCGTCCACCCATGGCCATGGCCCCCGCCCC CGTGGCTTCATCTATAAATCGTTCCGCGTTTTTGGCCGTCAGGTTTGGTACGCCTCGCCCAAAGTTCAGCTCTTG ATGGTCTCGCTCGTCTGCTTTCTCTGTCCCGGCATGTACAACTCTCTCACCGGCCTCGGAGGTGGTGGTCAGGTA GACGCCACGGCCCAGGATCATGCAAACGTCGCCCTCTACAGCACCTTTGCCGTCGTCAGCTTCTTATCTGGCTCT TTCGCCAATCGCCTTGGATTGCGCCTCACCCTGTCCATTGGCGGTCTTGGATACTGCATCTATAGCGCCTCGTTC CTCTCTTACTCCCATACGGGCAATGTTGGCTTCGTCATCTTCGCCGGCGCTTTTCTCGGCCTATGCGCCGGCTTG CTCTGGACGGCGCAAGGGGCCATCATGATGTCGTACCCGCCTGAGAACAGCAAGGGCCGCTACATCTCGTGCTTC TGGATCATCTTCAACCTCGGCGCCGTCATCGGCTCACTCATCCCACTCGCCGAAAACATCAACAAAAAGGCCGGA CCCGTCACCGACGGCACATACATCGCCTTCATCATTCTCATGCTCCTCGGCGCCGGCCTCTCGCTCATGCTTTGC GACGCCGACAAGGTCATCCGCGACGACAACACCAAAGTCATCCTGATGAAGAACCCGTCCTGGTCGAGCGAGCTC AAGGGCCTCTATGACACCCTCTTTCAAGAGCCCTGGATCCTCCTCCTCTTCCCCATGTTCTTCGCCTCCAACTTC TTCTACACCTACCAGAACAATGACATGAACGCGGCTCACTTCAATACCCGCACCCGCGCTCTCAATAATCTGCTC TACTGGCTCGCCCAGATCTTCGGCGCCATTCTCTCCGGCCACTGCCTTGACTTGCACTACATCCGCCGCAGCCTG CGCGCCAGGCTCGCTTTTGGCTTCCTCGCCACCCTCACCTTCGTCATCTGGGGGGGCGGATGGCATTGGCAGAAG CAGCAAGTCGCCCGCGCCGTCGCCGAGAGCAAGGACTACAAAGGCCTCATCGACTGGACCGACGGAAGCCGCTTC GCCGAGCCCATGGTTCTCTACTTCTTCTACGGCTTCTACGACGCCATCTGGCAGACCTCCATCTACTGGTTCATG GGATCTCTGTCCAACTCCGGTCGCAAGGCCGCCAATCTCGCAGGCTTCTACAAGTCGATTCAGTCCTTCGGAGCC AGCATCGCGTACTACATGGATGGCAGCAAAAAGGGGTACGACACCATCTTTGGAGTGACCTGGGGTTTGCTGGCG AGCTCCTTATTATTTGCCCTTCCTGTCATCCTGTACAAGATCAAGGACCACGTGTCGGTGGAAGATGACCTCAAG TTCAGCGACGAGACCATTGACGACGTCATCGTTGGGTCTGGGGAGAAGACCCACACGCGCCCGGAGGTCTGA |
| Gene | >Ophio5|3667 ATGGACACCGACAAGAAGGCTCACGGCCTCGCCGTCGATGAAACCTCGTCCACCCATGGCCATGGCCCCCGCCCC CGTGGCTTCATCTATAAATCGTTCCGCGTTTTTGGCCGTCAGGTTTGGTACGCCTCGCCCAAAGTTCAGCTCTTG ATGGTCTCGCTCGTCTGCTTTCTCTGTCCCGGCATGTACAACTCTCTCACCGGCCTCGGAGGTGGTGGTCAGGTA GACGCCACGGCCCAGGATCATGCAAACGTCGCCCTCTACAGCACCTTTGCCGTCGTCAGCTTCTTATCTGGCTCT TTCGCCAATCGCCTTGGATTGCGCCTCACCCTGTCCATTGGCGGTCTTGGATACTGCATCTATAGCGCCTCGTTC CTCTCTTACTCCCATACGGGCAATGTTGGCTTCGTCATCTTCGCCGGCGCTTTTCTCGGCCTATGCGCCGGCTTG CTCTGGACGGCGCAAGGGGCCATCATGATGTCGTACCCGCCTGAGAACAGCAAGGGCCGCTACATCTCGTGCTTC TGGATCATCTTCAACCTCGGCGCCGTCATCGGCTCACTCGTCCGTTCGGCCTCGATCCCCTTATTCATCTTCCCG CCCGCTCTAACGTCGTCCAGATCCCACTCGCCGAAAACATCAACAAAAAGGCCGGACCCGTCACCGACGGCACAT ACATCGCCTTCATCATTCTCATGCTCCTCGGCGCCGGCCTCTCGCTCATGCTTTGCGACGCCGACAAGGTCATCC GCGACGACAACACCAAAGTCATCCTGATGAAGAACCCGTCCTGGTCGAGCGAGCTCAAGGGCCTCTATGACACCC TCTTTCAAGAGCCCTGGATCCTCCTCCTCTTCCCCATGTTCTTCGCCTCCAACTTCTTCTACACCTACCAGAACA ATGACATGAACGCGGCTCACTTCAATACCCGCACCCGCGCTCTCAATAATCTGCTCTACTGGCTCGCCCAGATCT TCGGCGCCATTCTCTCCGGCCACTGCCTTGACTTGCACTACATCCGCCGCAGCCTGCGCGCCAGGCTCGCTTTTG GCTTCCTCGCCACCCTCACCTTCGTCATCTGGGGGGGCGGATGGCATTGGCAGAAGCAGCAAGTCGCCCGCGCCG TCGCCGAGAGCAAGGACTACAAAGGCCTCATCGACTGGACCGACGGAAGCCGCTTCGCCGAGCCCATGGTTCTCT ACTTCTTCTACGGCTTCTACGACGCCATCTGGCAGACCTCCATCTACTGGTATGTCTTGCCCTGCTCAAGCGATT GATATAGGATGTTGACGGAAGTACAGGTTCATGGGATCTCTGTCCAACTCCGGTCGCAAGGCCGCCAATCTCGCA GGTCAGTCATTGTCTGCCACGAGCAAGACCCTCATGCCGCTGACATTTTCGAACCCGCAGGCTTCTACAAGTCGA TTCAGTCCTTCGGAGCCAGCATCGCGTACTACATGGATGGCAGCAAAAAGGGGTACGACACCATCTTTGGAGTGA CCTGGGGTTTGCTGGCGAGCTCCTTATTATTTGCCCTTCCTGTCATCCTGTACAAGATCAAGGACCACGTGTCGG TGGAAGATGACCTCAAGTTCAGCGACGAGACCATTGACGACGTCATCGTTGGGTCTGGGGAGAAGACCCACACGC GCCCGGAGGTCTGA |