© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|3666 |
| Gene name | |
| Location | scaffold_29:43352..43832 |
| Strand | + |
| Gene length (bp) | 480 |
| Transcript length (bp) | 423 |
| Coding sequence length (bp) | 420 |
| Protein length (aa) | 140 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10937 | S36_mt | Ribosomal protein S36, mitochondrial | 2.4E-41 | 17 | 136 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006103 | 2-oxoglutarate metabolic process | Yes |
| GO:0009353 | mitochondrial oxoglutarate dehydrogenase complex | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0005947 | mitochondrial alpha-ketoglutarate dehydrogenase complex | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0045240 | dihydrolipoyl dehydrogenase complex | No |
| GO:0030062 | mitochondrial tricarboxylic acid cycle enzyme complex | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0008152 | metabolic process | No |
| GO:0045239 | tricarboxylic acid cycle enzyme complex | No |
| GO:1990234 | transferase complex | No |
| GO:1990204 | oxidoreductase complex | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0043648 | dicarboxylic acid metabolic process | No |
| GO:0045252 | oxoglutarate dehydrogenase complex | No |
| GO:0005575 | cellular_component | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3666 MFATRVLRQAAVHADRTPMIKFLGPRSIPSSVDHTPKPHPASPTGTLPESFSGYGNSSSVSRHNSFSSYRDHAQQ HGPLQKSIRGFEAGIGGSSGSQLGSIEPAKGVHFDLSELPSRFRRVPFDMAEIEAIESGGAALCR |
| Coding | >Ophio5|3666 ATGTTCGCAACTCGAGTCCTTCGGCAGGCCGCCGTCCACGCCGACCGCACACCCATGATCAAGTTTCTCGGCCCC CGCTCCATTCCTTCCTCCGTCGACCACACGCCTAAACCTCATCCCGCCTCCCCTACCGGAACGCTCCCGGAGTCC TTCTCCGGCTACGGCAACAGCTCTTCCGTCTCGCGCCATAACTCTTTCAGTTCGTACCGCGACCACGCCCAGCAA CACGGCCCCTTGCAAAAGTCCATCCGTGGCTTCGAAGCCGGCATTGGCGGGTCTTCCGGCTCCCAATTGGGCTCC ATCGAACCTGCAAAGGGCGTCCACTTCGACCTCTCCGAACTGCCGTCCCGCTTCCGTCGCGTTCCCTTCGATATG GCTGAGATTGAGGCCATTGAATCTGGCGGCGCTGCCCTGTGCCGC |
| Transcript | >Ophio5|3666 ATGTTCGCAACTCGAGTCCTTCGGCAGGCCGCCGTCCACGCCGACCGCACACCCATGATCAAGTTTCTCGGCCCC CGCTCCATTCCTTCCTCCGTCGACCACACGCCTAAACCTCATCCCGCCTCCCCTACCGGAACGCTCCCGGAGTCC TTCTCCGGCTACGGCAACAGCTCTTCCGTCTCGCGCCATAACTCTTTCAGTTCGTACCGCGACCACGCCCAGCAA CACGGCCCCTTGCAAAAGTCCATCCGTGGCTTCGAAGCCGGCATTGGCGGGTCTTCCGGCTCCCAATTGGGCTCC ATCGAACCTGCAAAGGGCGTCCACTTCGACCTCTCCGAACTGCCGTCCCGCTTCCGTCGCGTTCCCTTCGATATG GCTGAGATTGAGGCCATTGAATCTGGCGGCGCTGCCCTGTGCCGCTAG |
| Gene | >Ophio5|3666 ATGTTCGCAACTCGAGTCCTTCGGCAGGCCGCCGTCCACGCCGACCGCACACCCATGATCAAGTTTCTCGGCCCC CGCTCCATTCCTTGTGAGCTGTCCTTTTCATTTTCTTTGTCCCTTCCTCTTTACTGACCGATTCGAGCAGCCTCC GTCGACCACACGCCTAAACCTCATCCCGCCTCCCCTACCGGAACGCTCCCGGAGTCCTTCTCCGGCTACGGCAAC AGCTCTTCCGTCTCGCGCCATAACTCTTTCAGTTCGTACCGCGACCACGCCCAGCAACACGGCCCCTTGCAAAAG TCCATCCGTGGCTTCGAAGCCGGCATTGGCGGGTCTTCCGGCTCCCAATTGGGCTCCATCGAACCTGCAAAGGGC GTCCACTTCGACCTCTCCGAACTGCCGTCCCGCTTCCGTCGCGTTCCCTTCGATATGGCTGAGATTGAGGCCATT GAATCTGGCGGCGCTGCCCTGTGCCGCTAG |