Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3665
Gene name
Location	scaffold_29:40922..42373
Strand	+
Gene length (bp)	1451
Transcript length (bp)	1386
Coding sequence length (bp)	1383
Protein length (aa)	461

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 43	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	44	66	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	81.86	44.43	119.30
CcL	In ants, during behavior modification	242.82	104.30	381.32
CcD	In ants, recently dead	142.46	74.00	210.91

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.014568	yes
CcL	CcD	0.040344	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3665 MGSTWASKSVDEPPPIDCPSPRHPGLKALLAFVTQRIRRAGARSLVLFAALFLVVPALVRLTPASWHRHWTWSQA TSSNLRIVVFGSQDLLGSASGRPTWTERLCIELGCSSHFSLVPPAGSSHGLTSNGIYADEIHALEERMKKTDLAK SPALNYSFVAEQYPVSAQTPDLEAQLQRFLSRQPAAVAPHSTLWVFTFGTWDIWNLAALPRESSEHAIDALVSHL FSQVEVLYGDSLHRRSIAYSDFWAGVAKSDVERLADPGAQGRVDEREQEGFRIVIPDLLDVTLTPGWQTRPEPPA PHSKAEQMRNAAFLTKRWNSKVGEELGRWVAKGRARPEAMELSDQPEGKYPAAILQTGKGGLMDGPYPRRAGMRS TPAATILDAMTEQEVQRTGLSKEHAAIGMLDVSTPCVEGDETCSTPDAHLFHDAFTVGQRAAEGAVRVTAERISE ELILSPRGRAL
Coding	>Ophio5\|3665 ATGGGCTCCACGTGGGCCTCCAAGTCGGTCGATGAACCGCCACCCATCGACTGTCCTTCTCCTCGGCACCCCGGG CTCAAGGCGCTATTGGCTTTTGTCACGCAGCGCATCAGACGAGCGGGCGCGCGCTCCCTCGTGCTATTCGCGGCT CTGTTTCTCGTCGTCCCAGCCCTCGTGCGCCTGACACCCGCATCCTGGCATCGCCATTGGACTTGGTCCCAGGCT ACGAGCAGCAACTTGAGAATTGTCGTCTTCGGCTCCCAGGACCTACTGGGCAGCGCCTCCGGTCGGCCGACGTGG ACGGAACGGCTCTGCATCGAGCTCGGCTGCTCCTCACATTTCTCCCTCGTCCCTCCAGCAGGCTCGAGTCACGGA CTTACATCCAATGGCATCTACGCCGATGAGATCCATGCGCTCGAGGAACGGATGAAAAAGACGGATCTGGCCAAG TCGCCGGCATTAAACTACTCCTTCGTCGCCGAACAATACCCCGTTTCGGCGCAGACGCCGGACCTTGAGGCGCAG TTGCAGCGATTCCTTTCTCGCCAACCAGCTGCCGTCGCTCCACACAGCACCCTCTGGGTCTTTACCTTTGGAACC TGGGACATTTGGAATCTGGCGGCTCTGCCTCGGGAATCTAGCGAGCACGCCATCGACGCCCTGGTGTCGCATCTA TTCTCCCAGGTCGAGGTGCTGTATGGCGACTCACTCCATCGCAGATCGATTGCCTACTCGGACTTTTGGGCTGGC GTGGCCAAGTCAGACGTCGAAAGGCTCGCAGACCCAGGCGCGCAAGGGAGGGTAGATGAGCGCGAGCAGGAAGGC TTCCGGATCGTCATCCCAGACCTGCTCGACGTCACGCTCACGCCCGGGTGGCAGACGCGGCCGGAACCACCGGCA CCGCACTCCAAGGCGGAGCAGATGCGCAACGCTGCCTTCCTGACCAAGCGATGGAACTCCAAGGTGGGAGAAGAG CTGGGACGCTGGGTAGCCAAGGGAAGGGCGAGGCCGGAGGCGATGGAGCTGAGTGATCAACCCGAGGGCAAATAC CCCGCAGCTATCTTGCAGACCGGCAAGGGGGGCCTCATGGACGGGCCGTATCCGCGCAGGGCCGGGATGCGGTCG ACGCCGGCGGCCACGATCCTTGACGCCATGACAGAGCAGGAGGTGCAACGGACGGGTCTGAGCAAAGAGCACGCA GCGATAGGCATGTTGGATGTGTCGACACCTTGCGTGGAGGGCGATGAGACATGCTCCACGCCGGACGCCCACCTG TTTCACGATGCCTTTACCGTCGGCCAACGGGCGGCGGAGGGGGCCGTCCGGGTGACGGCGGAGAGAATCTCGGAG GAGCTCATACTCTCACCGCGTGGAAGGGCATTG
Transcript	>Ophio5\|3665 ATGGGCTCCACGTGGGCCTCCAAGTCGGTCGATGAACCGCCACCCATCGACTGTCCTTCTCCTCGGCACCCCGGG CTCAAGGCGCTATTGGCTTTTGTCACGCAGCGCATCAGACGAGCGGGCGCGCGCTCCCTCGTGCTATTCGCGGCT CTGTTTCTCGTCGTCCCAGCCCTCGTGCGCCTGACACCCGCATCCTGGCATCGCCATTGGACTTGGTCCCAGGCT ACGAGCAGCAACTTGAGAATTGTCGTCTTCGGCTCCCAGGACCTACTGGGCAGCGCCTCCGGTCGGCCGACGTGG ACGGAACGGCTCTGCATCGAGCTCGGCTGCTCCTCACATTTCTCCCTCGTCCCTCCAGCAGGCTCGAGTCACGGA CTTACATCCAATGGCATCTACGCCGATGAGATCCATGCGCTCGAGGAACGGATGAAAAAGACGGATCTGGCCAAG TCGCCGGCATTAAACTACTCCTTCGTCGCCGAACAATACCCCGTTTCGGCGCAGACGCCGGACCTTGAGGCGCAG TTGCAGCGATTCCTTTCTCGCCAACCAGCTGCCGTCGCTCCACACAGCACCCTCTGGGTCTTTACCTTTGGAACC TGGGACATTTGGAATCTGGCGGCTCTGCCTCGGGAATCTAGCGAGCACGCCATCGACGCCCTGGTGTCGCATCTA TTCTCCCAGGTCGAGGTGCTGTATGGCGACTCACTCCATCGCAGATCGATTGCCTACTCGGACTTTTGGGCTGGC GTGGCCAAGTCAGACGTCGAAAGGCTCGCAGACCCAGGCGCGCAAGGGAGGGTAGATGAGCGCGAGCAGGAAGGC TTCCGGATCGTCATCCCAGACCTGCTCGACGTCACGCTCACGCCCGGGTGGCAGACGCGGCCGGAACCACCGGCA CCGCACTCCAAGGCGGAGCAGATGCGCAACGCTGCCTTCCTGACCAAGCGATGGAACTCCAAGGTGGGAGAAGAG CTGGGACGCTGGGTAGCCAAGGGAAGGGCGAGGCCGGAGGCGATGGAGCTGAGTGATCAACCCGAGGGCAAATAC CCCGCAGCTATCTTGCAGACCGGCAAGGGGGGCCTCATGGACGGGCCGTATCCGCGCAGGGCCGGGATGCGGTCG ACGCCGGCGGCCACGATCCTTGACGCCATGACAGAGCAGGAGGTGCAACGGACGGGTCTGAGCAAAGAGCACGCA GCGATAGGCATGTTGGATGTGTCGACACCTTGCGTGGAGGGCGATGAGACATGCTCCACGCCGGACGCCCACCTG TTTCACGATGCCTTTACCGTCGGCCAACGGGCGGCGGAGGGGGCCGTCCGGGTGACGGCGGAGAGAATCTCGGAG GAGCTCATACTCTCACCGCGTGGAAGGGCATTGTAG
Gene	>Ophio5\|3665 ATGGGCTCCACGTGGGCCTCCAAGTCGGTCGATGAACCGCCACCCATCGACTGTCCTTCTCCTCGGCACCCCGGG CTCAAGGCGCTATTGGCTTTTGTCACGCAGCGCATCAGACGAGCGGGCGCGCGCTCCCTCGTGCTATTCGCGGCT CTGTTTCTCGTCGTCCCAGCCCTCGTGCGCCTGACACCCGCATCCTGGCATCGCCATTGGACTTGGTCCCAGGCT ACGAGCAGCAACTTGAGAATTGTCGTCTTCGGCTCCCAGGACCTACTGGGCAGCGCCTCCGGTCGGCCGACGTGG ACGGAACGGCTCTGCATCGAGGTAAGCGATGATTGGCGAGGAGTACGAATCCTTGGGGGGCTCGGCAGCTCACAG TCTCTCAAAAGCTCGGCTGCTCCTCACATTTCTCCCTCGTCCCTCCAGCAGGCTCGAGTCACGGACTTACATCCA ATGGCATCTACGCCGATGAGATCCATGCGCTCGAGGAACGGATGAAAAAGACGGATCTGGCCAAGTCGCCGGCAT TAAACTACTCCTTCGTCGCCGAACAATACCCCGTTTCGGCGCAGACGCCGGACCTTGAGGCGCAGTTGCAGCGAT TCCTTTCTCGCCAACCAGCTGCCGTCGCTCCACACAGCACCCTCTGGGTCTTTACCTTTGGAACCTGGGACATTT GGAATCTGGCGGCTCTGCCTCGGGAATCTAGCGAGCACGCCATCGACGCCCTGGTGTCGCATCTATTCTCCCAGG TCGAGGTGCTGTATGGCGACTCACTCCATCGCAGATCGATTGCCTACTCGGACTTTTGGGCTGGCGTGGCCAAGT CAGACGTCGAAAGGCTCGCAGACCCAGGCGCGCAAGGGAGGGTAGATGAGCGCGAGCAGGAAGGCTTCCGGATCG TCATCCCAGACCTGCTCGACGTCACGCTCACGCCCGGGTGGCAGACGCGGCCGGAACCACCGGCACCGCACTCCA AGGCGGAGCAGATGCGCAACGCTGCCTTCCTGACCAAGCGATGGAACTCCAAGGTGGGAGAAGAGCTGGGACGCT GGGTAGCCAAGGGAAGGGCGAGGCCGGAGGCGATGGAGCTGAGTGATCAACCCGAGGGCAAATACCCCGCAGCTA TCTTGCAGACCGGCAAGGGGGGCCTCATGGACGGGCCGTATCCGCGCAGGGCCGGGATGCGGTCGACGCCGGCGG CCACGATCCTTGACGCCATGACAGAGCAGGAGGTGCAACGGACGGGTCTGAGCAAAGAGCACGCAGCGATAGGCA TGTTGGATGTGTCGACACCTTGCGTGGAGGGCGATGAGACATGCTCCACGCCGGACGCCCACCTGTTTCACGATG CCTTTACCGTCGGCCAACGGGCGGCGGAGGGGGCCGTCCGGGTGACGGCGGAGAGAATCTCGGAGGAGCTCATAC TCTCACCGCGTGGAAGGGCATTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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