© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3644 |
| Gene name | |
| Location | scaffold_289:2987..4970 |
| Strand | + |
| Gene length (bp) | 1983 |
| Transcript length (bp) | 1833 |
| Coding sequence length (bp) | 1830 |
| Protein length (aa) | 610 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01039 | Carboxyl_trans | Carboxyl transferase domain | 5.4E-138 | 133 | 596 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3ULD5|MCCB_MOUSE | Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus GN=Mccc2 PE=1 SV=1 | 81 | 610 | 0.0E+00 |
| sp|Q9V9A7|MCCB_DROME | Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Drosophila melanogaster GN=l(2)04524 PE=2 SV=1 | 64 | 610 | 0.0E+00 |
| sp|Q9LDD8|MCCB_ARATH | Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Arabidopsis thaliana GN=MCCB PE=2 SV=1 | 80 | 610 | 0.0E+00 |
| sp|Q8T2J9|MCCB_DICDI | Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Dictyostelium discoideum GN=mccb PE=3 SV=2 | 73 | 610 | 0.0E+00 |
| sp|Q9HCC0|MCCB_HUMAN | Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=MCCC2 PE=1 SV=1 | 65 | 610 | 0.0E+00 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3ULD5|MCCB_MOUSE | Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus GN=Mccc2 PE=1 SV=1 | 81 | 610 | 0.0E+00 |
| sp|Q9V9A7|MCCB_DROME | Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Drosophila melanogaster GN=l(2)04524 PE=2 SV=1 | 64 | 610 | 0.0E+00 |
| sp|Q9LDD8|MCCB_ARATH | Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Arabidopsis thaliana GN=MCCB PE=2 SV=1 | 80 | 610 | 0.0E+00 |
| sp|Q8T2J9|MCCB_DICDI | Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Dictyostelium discoideum GN=mccb PE=3 SV=2 | 73 | 610 | 0.0E+00 |
| sp|Q9HCC0|MCCB_HUMAN | Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=MCCC2 PE=1 SV=1 | 65 | 610 | 0.0E+00 |
| sp|P34385|MCCB_CAEEL | Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Caenorhabditis elegans GN=F02A9.4 PE=3 SV=1 | 89 | 610 | 0.0E+00 |
| sp|Q5XIT9|MCCB_RAT | Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Rattus norvegicus GN=Mccc2 PE=2 SV=1 | 71 | 610 | 0.0E+00 |
| sp|O31825|YNGE_BACSU | Uncharacterized carboxylase YngE OS=Bacillus subtilis (strain 168) GN=yngE PE=3 SV=2 | 118 | 592 | 7.0E-99 |
| sp|Q8GBW6|12S_PROFR | Methylmalonyl-CoA carboxyltransferase 12S subunit OS=Propionibacterium freudenreichii subsp. shermanii PE=1 SV=3 | 102 | 589 | 3.0E-72 |
| sp|P54541|PCCB_BACSU | Putative propionyl-CoA carboxylase beta chain OS=Bacillus subtilis (strain 168) GN=yqjD PE=3 SV=2 | 107 | 584 | 2.0E-68 |
| sp|P53003|PCCB_SACEN | Propionyl-CoA carboxylase beta chain OS=Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338) GN=pccB PE=3 SV=2 | 95 | 588 | 6.0E-68 |
| sp|Q3J4E3|PCCB_RHOS4 | Propionyl-CoA carboxylase beta chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=pccB PE=1 SV=1 | 124 | 601 | 1.0E-67 |
| sp|P9WQH7|PCC5_MYCTU | Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=accD5 PE=1 SV=1 | 125 | 588 | 2.0E-61 |
| sp|P9WQH6|PCC5_MYCTO | Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=accD5 PE=3 SV=1 | 125 | 588 | 2.0E-61 |
| sp|P07633|PCCB_RAT | Propionyl-CoA carboxylase beta chain, mitochondrial OS=Rattus norvegicus GN=Pccb PE=2 SV=1 | 124 | 589 | 6.0E-61 |
| sp|P79384|PCCB_PIG | Propionyl-CoA carboxylase beta chain, mitochondrial OS=Sus scrofa GN=PCCB PE=2 SV=1 | 124 | 588 | 1.0E-60 |
| sp|Q99MN9|PCCB_MOUSE | Propionyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus GN=Pccb PE=1 SV=2 | 124 | 589 | 2.0E-60 |
| sp|P05166|PCCB_HUMAN | Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=PCCB PE=1 SV=3 | 101 | 588 | 2.0E-60 |
| sp|P53002|PCCB_MYCLE | Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium leprae (strain TN) GN=accD5 PE=3 SV=1 | 135 | 588 | 2.0E-59 |
| sp|Q2TBR0|PCCB_BOVIN | Propionyl-CoA carboxylase beta chain, mitochondrial OS=Bos taurus GN=PCCB PE=2 SV=1 | 124 | 588 | 2.0E-59 |
| sp|Q06101|PCCB_RHOER | Propionyl-CoA carboxylase beta chain OS=Rhodococcus erythropolis GN=pccB PE=3 SV=1 | 141 | 551 | 2.0E-41 |
| sp|P9WQH5|PCC6_MYCTU | Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=accD6 PE=1 SV=1 | 149 | 600 | 3.0E-40 |
| sp|P9WQH4|PCC6_MYCTO | Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=accD6 PE=1 SV=1 | 149 | 600 | 3.0E-40 |
| sp|P63408|PCC6_MYCBO | Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=accD6 PE=3 SV=1 | 149 | 600 | 3.0E-40 |
| sp|Q06700|GCDA_ACIFV | Glutaconyl-CoA decarboxylase subunit alpha OS=Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) GN=gcdA PE=1 SV=1 | 103 | 568 | 1.0E-36 |
| sp|Q83KA2|ACCD_SHIFL | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella flexneri GN=accD PE=3 SV=4 | 138 | 315 | 5.0E-07 |
| sp|Q3A6L1|ACCD_PELCD | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=accD PE=3 SV=1 | 138 | 306 | 6.0E-07 |
| sp|C4Z8P1|ACCDA_EUBR3 | Acetyl-coenzyme A carboxylase carboxyl transferase subunits beta/alpha OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=accD PE=3 SV=1 | 176 | 548 | 1.0E-06 |
| sp|Q5QUD9|ACCD_IDILO | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=accD PE=3 SV=1 | 177 | 360 | 2.0E-06 |
| sp|A7MH52|ACCD_CROS8 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=accD PE=3 SV=2 | 138 | 374 | 2.0E-06 |
| sp|Q0RKW5|ACCDA_FRAAA | Acetyl-coenzyme A carboxylase carboxyl transferase subunits beta/alpha OS=Frankia alni (strain ACN14a) GN=accD PE=3 SV=1 | 182 | 541 | 4.0E-06 |
| sp|B1VKF0|ACCD_CRYJA | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cryptomeria japonica GN=accD PE=3 SV=1 | 176 | 317 | 1.0E-05 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3644 MRESARISPRSIQRQANRTPTSQIAKSLNLDLLLLFHLHQTHKPPPPPHLVTMLRPSPSPTSRRAALVLVRRSVS RLTPVHQATTVSRLPSTVDASTDDFRNNARQMDEMVSRMQLLTRQAQRGGSDSARARHLARNRMLPRDRITALLD PASSFLELSPLAGYELYPEADVPAGGIITGLGQVEGVTCVVVANDSTVKGGSYYPITVKKHLRAQAVAQENNLPC IYLVDSGGANLPHQADVFPDQNHFGRIFYNQARMSARGIPQISVVMGPCTAGGAYVPAMSDEAIIVRDQGHIFLA GPPLVKAATGEVVSPEDLGGGLMHSSVSGVTDYLAADDAHALVLARRCVANLNWPPCSATTPIREDEPPLYDPDE LLGIASPNLRKPLPIRDVIARIVDGSRFSEFKALFGTTLVTGFATIHGHPVGIVANDGILFAASAVKGAHFVQLC AQRGLPLVFLQNIAGFMVGAAAERDGIAKHGAKFVTAVACADVPKFTVVVGGSYGAGNYGMCGRAYSPRFLWMWP NARIGVMGGEQLAAVMETVGQKADPELKARIERESDATYSSARLWDDGIIPPQHTRRYLALGLSAAMGGRNKVQP NETRYGVFRM |
| Coding | >Ophio5|3644 ATGCGCGAGTCCGCCCGCATCTCACCTCGCTCAATTCAACGTCAGGCCAATCGCACGCCAACATCTCAAATCGCC AAAAGCCTCAATCTCGACCTCCTCCTCCTGTTCCACCTTCACCAAACTCACAAACCCCCCCCCCCACCCCATCTC GTCACCATGCTGCGCCCGTCGCCGTCCCCGACGTCTCGACGGGCCGCCCTCGTCCTCGTACGGCGCAGCGTGTCC CGCCTCACGCCCGTTCATCAAGCGACGACCGTCTCTCGGCTCCCGTCGACCGTCGACGCTTCGACCGACGACTTT CGAAATAATGCTCGGCAGATGGACGAGATGGTCTCGCGTATGCAGCTGCTTACTCGCCAGGCGCAGAGAGGCGGT TCGGATTCCGCTAGGGCTCGTCACCTCGCCCGTAATCGCATGCTGCCGCGAGATAGGATCACTGCTTTGCTCGAT CCTGCTTCCTCCTTTCTTGAGCTTTCGCCTCTTGCCGGCTATGAGCTTTATCCCGAGGCCGACGTTCCCGCGGGG GGCATCATCACCGGCCTCGGTCAGGTTGAGGGTGTTACCTGTGTCGTCGTCGCCAATGATAGTACCGTCAAGGGC GGCTCTTATTATCCCATCACTGTCAAGAAACATTTACGCGCCCAGGCCGTCGCCCAAGAGAATAACCTTCCCTGC ATCTACCTCGTCGACTCCGGCGGCGCCAACCTCCCTCATCAAGCCGACGTCTTCCCCGATCAGAACCATTTCGGT CGCATCTTCTACAACCAAGCCCGTATGTCCGCCCGCGGCATTCCCCAAATCTCCGTCGTCATGGGCCCCTGCACC GCCGGTGGCGCCTACGTCCCCGCCATGAGCGACGAGGCCATCATCGTCCGGGACCAGGGCCACATCTTCCTCGCA GGACCGCCCCTCGTCAAGGCCGCCACCGGAGAGGTCGTCTCCCCGGAGGACCTCGGCGGCGGTCTCATGCACTCA TCCGTCTCCGGCGTCACCGATTATCTCGCCGCCGACGACGCCCACGCCCTCGTCCTCGCCCGTCGTTGTGTCGCC AACCTCAACTGGCCCCCTTGCTCTGCTACGACCCCTATCCGAGAAGACGAACCCCCCTTATACGATCCGGACGAA CTCCTCGGCATCGCCTCTCCCAACCTCCGCAAGCCCCTCCCCATCCGCGACGTCATCGCTCGCATCGTCGACGGC TCCCGCTTCTCCGAATTCAAAGCCTTATTCGGAACGACCCTCGTGACCGGCTTCGCCACCATACACGGTCACCCC GTCGGCATCGTCGCCAACGACGGCATCCTCTTTGCCGCCTCCGCCGTCAAGGGCGCCCACTTCGTCCAGCTCTGC GCCCAGCGCGGCCTTCCCCTCGTCTTCCTCCAGAACATTGCCGGCTTCATGGTCGGCGCTGCCGCCGAGCGTGAC GGCATCGCCAAGCACGGCGCCAAGTTCGTCACCGCCGTCGCTTGCGCCGACGTCCCCAAGTTCACCGTCGTCGTC GGCGGATCGTACGGCGCCGGAAACTACGGCATGTGCGGTCGCGCCTACAGCCCGCGCTTCCTCTGGATGTGGCCA AACGCCCGCATCGGCGTCATGGGCGGCGAGCAGCTCGCCGCCGTCATGGAGACCGTCGGCCAAAAGGCCGACCCG GAGCTCAAGGCCCGTATCGAGCGCGAGAGCGACGCCACCTACTCCTCCGCCCGCCTCTGGGACGATGGCATCATC CCGCCCCAACACACCCGCCGCTACCTTGCCCTGGGCCTCAGCGCCGCCATGGGAGGCCGCAACAAGGTCCAGCCC AATGAGACACGCTACGGCGTCTTCCGCATG |
| Transcript | >Ophio5|3644 ATGCGCGAGTCCGCCCGCATCTCACCTCGCTCAATTCAACGTCAGGCCAATCGCACGCCAACATCTCAAATCGCC AAAAGCCTCAATCTCGACCTCCTCCTCCTGTTCCACCTTCACCAAACTCACAAACCCCCCCCCCCACCCCATCTC GTCACCATGCTGCGCCCGTCGCCGTCCCCGACGTCTCGACGGGCCGCCCTCGTCCTCGTACGGCGCAGCGTGTCC CGCCTCACGCCCGTTCATCAAGCGACGACCGTCTCTCGGCTCCCGTCGACCGTCGACGCTTCGACCGACGACTTT CGAAATAATGCTCGGCAGATGGACGAGATGGTCTCGCGTATGCAGCTGCTTACTCGCCAGGCGCAGAGAGGCGGT TCGGATTCCGCTAGGGCTCGTCACCTCGCCCGTAATCGCATGCTGCCGCGAGATAGGATCACTGCTTTGCTCGAT CCTGCTTCCTCCTTTCTTGAGCTTTCGCCTCTTGCCGGCTATGAGCTTTATCCCGAGGCCGACGTTCCCGCGGGG GGCATCATCACCGGCCTCGGTCAGGTTGAGGGTGTTACCTGTGTCGTCGTCGCCAATGATAGTACCGTCAAGGGC GGCTCTTATTATCCCATCACTGTCAAGAAACATTTACGCGCCCAGGCCGTCGCCCAAGAGAATAACCTTCCCTGC ATCTACCTCGTCGACTCCGGCGGCGCCAACCTCCCTCATCAAGCCGACGTCTTCCCCGATCAGAACCATTTCGGT CGCATCTTCTACAACCAAGCCCGTATGTCCGCCCGCGGCATTCCCCAAATCTCCGTCGTCATGGGCCCCTGCACC GCCGGTGGCGCCTACGTCCCCGCCATGAGCGACGAGGCCATCATCGTCCGGGACCAGGGCCACATCTTCCTCGCA GGACCGCCCCTCGTCAAGGCCGCCACCGGAGAGGTCGTCTCCCCGGAGGACCTCGGCGGCGGTCTCATGCACTCA TCCGTCTCCGGCGTCACCGATTATCTCGCCGCCGACGACGCCCACGCCCTCGTCCTCGCCCGTCGTTGTGTCGCC AACCTCAACTGGCCCCCTTGCTCTGCTACGACCCCTATCCGAGAAGACGAACCCCCCTTATACGATCCGGACGAA CTCCTCGGCATCGCCTCTCCCAACCTCCGCAAGCCCCTCCCCATCCGCGACGTCATCGCTCGCATCGTCGACGGC TCCCGCTTCTCCGAATTCAAAGCCTTATTCGGAACGACCCTCGTGACCGGCTTCGCCACCATACACGGTCACCCC GTCGGCATCGTCGCCAACGACGGCATCCTCTTTGCCGCCTCCGCCGTCAAGGGCGCCCACTTCGTCCAGCTCTGC GCCCAGCGCGGCCTTCCCCTCGTCTTCCTCCAGAACATTGCCGGCTTCATGGTCGGCGCTGCCGCCGAGCGTGAC GGCATCGCCAAGCACGGCGCCAAGTTCGTCACCGCCGTCGCTTGCGCCGACGTCCCCAAGTTCACCGTCGTCGTC GGCGGATCGTACGGCGCCGGAAACTACGGCATGTGCGGTCGCGCCTACAGCCCGCGCTTCCTCTGGATGTGGCCA AACGCCCGCATCGGCGTCATGGGCGGCGAGCAGCTCGCCGCCGTCATGGAGACCGTCGGCCAAAAGGCCGACCCG GAGCTCAAGGCCCGTATCGAGCGCGAGAGCGACGCCACCTACTCCTCCGCCCGCCTCTGGGACGATGGCATCATC CCGCCCCAACACACCCGCCGCTACCTTGCCCTGGGCCTCAGCGCCGCCATGGGAGGCCGCAACAAGGTCCAGCCC AATGAGACACGCTACGGCGTCTTCCGCATGTAG |
| Gene | >Ophio5|3644 ATGCGCGAGTCCGCCCGCATCTCACCTCGCTCAATTCAACGTCAGGCCAATCGCACGCCAACATCTCAAATCGCC AAAAGCCTCAATCTCGACCTCCTCCTCCTGTTCCACCTTCACCAAACTCACAAACCCCCCCCCCCACCCCATCTC GTCACCATGCTGCGCCCGTCGCCGTCCCCGACGTCTCGACGGGCCGCCCTCGTCCTCGTACGGCGCAGCGTGTCC CGCCTCACGCCCGTTCATCAAGCGACGACCGTCTCTCGGCTCCCGTCGACCGTCGACGCTTCGACCGACGACTTT CGAAATAATGCTCGGCAGATGGACGAGATGGTCTCGCGTATGCAGCTGCTTACTCGCCAGGCGCAGAGAGGCGGT TCGGATTCCGCTAGGGCTCGTCACCTCGCCCGTAATCGCATGCTGCCGCGAGATAGGATCACTGCTTTGCTCGAT CCTGCTTCCTCCTTTCTTGAGCTTTCGCCTCTTGCCGGCTATGAGCTTTATCCCGAGGCCGACGTTCCCGCGGGG GGCATCATCACCGGCCTCGGTCAGGTTGAGGGTGTTACCTGTGTCGTCGTCGCCAATGATAGTACCGTCAAGGGC GGCTCTTATTATCCCATCACTGTCAAGAAACATTTACGCGCCCAGGCCGTCGCCCAAGAGAATAACCTTCCGTAG GCCTCTTCCCATATCCCTACATCTCCCCCCCCCCCCCCAACCCCCTTCTCCTTTACACCTACTGAATCGTCTCCT CCAGCTGCATCTACCTCGTCGACTCCGGCGGCGCCAACCTCCCTCATCAAGCCGACGTCTTCCCCGATCAGAACC ATTTCGGTCGCATCTTCTACAACCAAGCCCGTATGTCCGCCCGCGGCATTCCCCAAATCTCCGTCGTCATGGGCC CCTGCACCGCCGGTGGCGCCTACGTCCCCGCCATGAGCGACGAGGCCATCATCGTCCGGGACCAGGGCCACATCT TCCTCGCAGGACCGCCCCTCGTCAAGGCCGCCACCGGAGAGGTCGTCTCCCCGGAGGACCTCGGCGGCGGTCTCA TGCACTCATCCGTCTCCGGCGTCACCGATTATCTCGCCGCCGACGACGCCCACGCCCTCGTCCTCGCCCGTCGTT GTGTCGCCAACCTCAACTGGCCCCCTTGCTCTGCTACGACCCCTATCCGAGAAGACGAACCCCCCTTATACGATC CGGACGAACTCCTCGGCATCGCCTCTCCCAACCTCCGCAAGCCCCTCCCCATCCGCGACGTCATCGCTCGCATCG TCGACGGCTCCCGCTTCTCCGAATTCAAAGCCTTATTCGGAACGACCCTCGTGACCGGCTTCGCCACCATACACG GTCACCCCGTCGGCATCGTCGCCAACGACGGCATCCTCTTTGCCGCCTCCGCCGTCAAGGGCGCCCACTTCGTCC AGCTCTGCGCCCAGCGCGGCCTTCCCCTCGTCTTCCTCCAGAACATTGCCGGCTTCATGGTCGGCGCTGCCGCCG AGCGTGACGGCATCGCCAAGCACGGCGCCAAGTTCGTCACCGCCGTCGCTTGCGCCGACGTCCCCAAGTTCACCG TCGTCGTCGGCGGATCGTACGGCGCCGGAAACTACGGCATGTGCGGTCGCGCCTACAGCCCGCGCTTCCTCTGGA TGTGGCCAAACGCCCGCATCGGCGTCATGGGCGGCGAGCAGCTCGCCGCCGTCATGGAGACCGTCGGCCAAAAGG CCGACCCGGAGCTCAAGGCCCGTATCGAGCGCGAGAGCGACGCCACCTACTCCTCCGCCCGCCTCTGGGTGAGTC CCCCTTAGCCCTTGTGAGCCCCTGATAAGCCCCCCCGACGCCGGGCTGACCTCTTCCCAGGACGATGGCATCATC CCGCCCCAACACACCCGCCGCTACCTTGCCCTGGGCCTCAGCGCCGCCATGGGAGGCCGCAACAAGGTCCAGCCC AATGAGACACGCTACGGCGTCTTCCGCATGTAG |