© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|3623 |
| Gene name | |
| Location | scaffold_286:17277..17736 |
| Strand | + |
| Gene length (bp) | 459 |
| Transcript length (bp) | 459 |
| Coding sequence length (bp) | 456 |
| Protein length (aa) | 152 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1446 | 0.0759 | 0.8807 | 0.0688 | 0.0871 | 0.0074 | 0.1633 | 0.1762 | 0.162 | 0.0026 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 16 | 0.999772 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 9.31 | 1.45 | 17.18 |
| CcL | In ants, during behavior modification | 7.12 | 0.30 | 13.95 |
| CcD | In ants, recently dead | 4.75 | 0.00 | 9.59 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.588281 | no |
| SC16a | CcD | 0.155092 | no |
| CcL | CcD | 0.458879 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 7275 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps camponoti-floridani | Ophcf2|01115 |
| Ophiocordyceps camponoti-rufipedis | Ophun1|7192 |
| Ophiocordyceps kimflemingae | Ophio5|3623 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3623 MRFLAIVISFVSLALARPISMKEAYDQAAPSHCESTTSWDDSVISTENRYETIENRLRQMNRSRFCTERIQAFSF HERHHMTKAGCLTIVEEHCSEYDEIQDLYECVDRYVKRHRFAVNEPSPTDSFSENPDMEPAEQEGSKLEGEEWNT DH |
| Coding | >Ophio5|3623 ATGAGGTTTCTCGCCATCGTCATTTCCTTTGTCAGCCTGGCCCTCGCCAGGCCCATCTCCATGAAGGAGGCCTAC GATCAGGCTGCGCCTAGCCACTGCGAGTCAACGACATCGTGGGATGACAGCGTCATATCAACTGAGAATAGATAT GAGACAATTGAGAACAGGCTTAGACAGATGAACCGCTCCCGTTTCTGCACCGAGCGTATCCAGGCTTTTTCCTTT CATGAAAGGCATCACATGACCAAGGCCGGTTGCTTAACCATCGTCGAGGAGCACTGCAGTGAATACGACGAGATA CAGGACTTGTATGAATGCGTGGACCGATACGTGAAAAGGCATAGATTCGCCGTCAACGAGCCGTCTCCAACGGAT TCGTTTTCCGAGAACCCTGATATGGAGCCAGCCGAGCAGGAGGGTAGCAAATTAGAGGGAGAGGAGTGGAATACA GATCAC |
| Transcript | >Ophio5|3623 ATGAGGTTTCTCGCCATCGTCATTTCCTTTGTCAGCCTGGCCCTCGCCAGGCCCATCTCCATGAAGGAGGCCTAC GATCAGGCTGCGCCTAGCCACTGCGAGTCAACGACATCGTGGGATGACAGCGTCATATCAACTGAGAATAGATAT GAGACAATTGAGAACAGGCTTAGACAGATGAACCGCTCCCGTTTCTGCACCGAGCGTATCCAGGCTTTTTCCTTT CATGAAAGGCATCACATGACCAAGGCCGGTTGCTTAACCATCGTCGAGGAGCACTGCAGTGAATACGACGAGATA CAGGACTTGTATGAATGCGTGGACCGATACGTGAAAAGGCATAGATTCGCCGTCAACGAGCCGTCTCCAACGGAT TCGTTTTCCGAGAACCCTGATATGGAGCCAGCCGAGCAGGAGGGTAGCAAATTAGAGGGAGAGGAGTGGAATACA GATCACTGA |
| Gene | >Ophio5|3623 ATGAGGTTTCTCGCCATCGTCATTTCCTTTGTCAGCCTGGCCCTCGCCAGGCCCATCTCCATGAAGGAGGCCTAC GATCAGGCTGCGCCTAGCCACTGCGAGTCAACGACATCGTGGGATGACAGCGTCATATCAACTGAGAATAGATAT GAGACAATTGAGAACAGGCTTAGACAGATGAACCGCTCCCGTTTCTGCACCGAGCGTATCCAGGCTTTTTCCTTT CATGAAAGGCATCACATGACCAAGGCCGGTTGCTTAACCATCGTCGAGGAGCACTGCAGTGAATACGACGAGATA CAGGACTTGTATGAATGCGTGGACCGATACGTGAAAAGGCATAGATTCGCCGTCAACGAGCCGTCTCCAACGGAT TCGTTTTCCGAGAACCCTGATATGGAGCCAGCCGAGCAGGAGGGTAGCAAATTAGAGGGAGAGGAGTGGAATACA GATCACTGA |