Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3622
Gene name
Locationscaffold_286:15079..16126
Strand-
Gene length (bp)1047
Transcript length (bp)1047
Coding sequence length (bp)1044
Protein length (aa) 348

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43 1.7E-31 11 290

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P82594|IABF_STRCX Extracellular exo-alpha-(1->5)-L-arabinofuranosidase OS=Streptomyces chartreusis PE=1 SV=1 21 286 1.0E-21

GO

GO Term Description Terminal node
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Yes
GO:0005975 carbohydrate metabolic process Yes
GO:0016787 hydrolase activity No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No
GO:0003824 catalytic activity No
GO:0008150 biological_process No
GO:0003674 molecular_function No
GO:0008152 metabolic process No
GO:0016798 hydrolase activity, acting on glycosyl bonds No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 32 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3622
MSNKVICDHCDTPDPWIIAANGIFYFTFTLANRVEIWASPQLENFEDCKKSVIWQPEPGSAWSADIWAPELHHIK
GKWYVYTCGAPPDVGNPGHRTVVLESDKEDPMDVSGWKFLGPLKGMPDQWSIDATVFSITGDDLYICWSGWPPGD
NSDTQQDLFVAKMNSPVEVLGDTMTCICHATKAWERPDDGSRGIAEGPTWVDFAGFRGIVYSAYGSWTSEYKLGL
IALQGDDPLRAKSWSKRSAPLLVSDKDHGGPFGPGHASFLPSPYDDGRIYCIYHGTANYGEGWANRKARVLSLGP
EMFASNSDPICCHCASPMKFSNTKDKVEQVMNKASHAHGLLGKVRKYL
Coding >Ophio5|3622
ATGTCCAACAAGGTCATCTGCGACCATTGCGACACGCCAGATCCCTGGATCATCGCCGCTAATGGCATCTTCTAC
TTCACCTTTACCCTCGCCAATCGTGTCGAGATTTGGGCCTCTCCTCAACTCGAGAACTTTGAGGACTGCAAGAAA
TCCGTCATCTGGCAGCCAGAGCCCGGCTCGGCTTGGTCGGCAGATATCTGGGCGCCCGAGCTACATCACATCAAG
GGCAAATGGTATGTCTACACGTGCGGTGCACCGCCCGACGTCGGAAATCCCGGCCACAGGACGGTGGTGCTCGAG
AGCGATAAGGAAGACCCCATGGATGTGAGCGGGTGGAAGTTCCTAGGCCCGCTCAAGGGCATGCCCGACCAGTGG
TCCATCGATGCCACCGTCTTCAGCATCACCGGCGACGACCTATACATTTGCTGGAGCGGCTGGCCTCCAGGCGAC
AACAGCGACACGCAACAGGACCTGTTCGTCGCCAAGATGAACAGTCCCGTCGAGGTCCTGGGGGATACCATGACG
TGCATCTGCCATGCAACCAAGGCCTGGGAGCGCCCCGACGACGGGTCTCGTGGCATTGCTGAGGGACCGACCTGG
GTCGACTTCGCCGGTTTCAGGGGCATCGTCTACTCCGCATACGGCAGCTGGACGAGCGAATACAAGCTGGGTCTG
ATTGCGCTCCAAGGCGACGACCCCCTTCGCGCCAAATCCTGGTCCAAGCGATCCGCGCCCCTGCTCGTCAGCGAC
AAGGATCACGGAGGGCCGTTCGGTCCCGGACACGCCAGCTTCTTACCGAGCCCCTACGACGACGGCCGCATCTAC
TGCATCTACCACGGGACGGCCAACTACGGCGAAGGTTGGGCTAACCGCAAAGCTCGAGTCTTGAGCCTGGGACCG
GAAATGTTCGCCTCCAACTCTGACCCGATTTGCTGCCACTGTGCGAGCCCGATGAAGTTCAGCAACACGAAGGAC
AAGGTTGAGCAGGTGATGAATAAGGCTTCTCACGCCCACGGGCTGCTCGGAAAGGTTCGGAAGTATTTG
Transcript >Ophio5|3622
ATGTCCAACAAGGTCATCTGCGACCATTGCGACACGCCAGATCCCTGGATCATCGCCGCTAATGGCATCTTCTAC
TTCACCTTTACCCTCGCCAATCGTGTCGAGATTTGGGCCTCTCCTCAACTCGAGAACTTTGAGGACTGCAAGAAA
TCCGTCATCTGGCAGCCAGAGCCCGGCTCGGCTTGGTCGGCAGATATCTGGGCGCCCGAGCTACATCACATCAAG
GGCAAATGGTATGTCTACACGTGCGGTGCACCGCCCGACGTCGGAAATCCCGGCCACAGGACGGTGGTGCTCGAG
AGCGATAAGGAAGACCCCATGGATGTGAGCGGGTGGAAGTTCCTAGGCCCGCTCAAGGGCATGCCCGACCAGTGG
TCCATCGATGCCACCGTCTTCAGCATCACCGGCGACGACCTATACATTTGCTGGAGCGGCTGGCCTCCAGGCGAC
AACAGCGACACGCAACAGGACCTGTTCGTCGCCAAGATGAACAGTCCCGTCGAGGTCCTGGGGGATACCATGACG
TGCATCTGCCATGCAACCAAGGCCTGGGAGCGCCCCGACGACGGGTCTCGTGGCATTGCTGAGGGACCGACCTGG
GTCGACTTCGCCGGTTTCAGGGGCATCGTCTACTCCGCATACGGCAGCTGGACGAGCGAATACAAGCTGGGTCTG
ATTGCGCTCCAAGGCGACGACCCCCTTCGCGCCAAATCCTGGTCCAAGCGATCCGCGCCCCTGCTCGTCAGCGAC
AAGGATCACGGAGGGCCGTTCGGTCCCGGACACGCCAGCTTCTTACCGAGCCCCTACGACGACGGCCGCATCTAC
TGCATCTACCACGGGACGGCCAACTACGGCGAAGGTTGGGCTAACCGCAAAGCTCGAGTCTTGAGCCTGGGACCG
GAAATGTTCGCCTCCAACTCTGACCCGATTTGCTGCCACTGTGCGAGCCCGATGAAGTTCAGCAACACGAAGGAC
AAGGTTGAGCAGGTGATGAATAAGGCTTCTCACGCCCACGGGCTGCTCGGAAAGGTTCGGAAGTATTTGTGA
Gene >Ophio5|3622
ATGTCCAACAAGGTCATCTGCGACCATTGCGACACGCCAGATCCCTGGATCATCGCCGCTAATGGCATCTTCTAC
TTCACCTTTACCCTCGCCAATCGTGTCGAGATTTGGGCCTCTCCTCAACTCGAGAACTTTGAGGACTGCAAGAAA
TCCGTCATCTGGCAGCCAGAGCCCGGCTCGGCTTGGTCGGCAGATATCTGGGCGCCCGAGCTACATCACATCAAG
GGCAAATGGTATGTCTACACGTGCGGTGCACCGCCCGACGTCGGAAATCCCGGCCACAGGACGGTGGTGCTCGAG
AGCGATAAGGAAGACCCCATGGATGTGAGCGGGTGGAAGTTCCTAGGCCCGCTCAAGGGCATGCCCGACCAGTGG
TCCATCGATGCCACCGTCTTCAGCATCACCGGCGACGACCTATACATTTGCTGGAGCGGCTGGCCTCCAGGCGAC
AACAGCGACACGCAACAGGACCTGTTCGTCGCCAAGATGAACAGTCCCGTCGAGGTCCTGGGGGATACCATGACG
TGCATCTGCCATGCAACCAAGGCCTGGGAGCGCCCCGACGACGGGTCTCGTGGCATTGCTGAGGGACCGACCTGG
GTCGACTTCGCCGGTTTCAGGGGCATCGTCTACTCCGCATACGGCAGCTGGACGAGCGAATACAAGCTGGGTCTG
ATTGCGCTCCAAGGCGACGACCCCCTTCGCGCCAAATCCTGGTCCAAGCGATCCGCGCCCCTGCTCGTCAGCGAC
AAGGATCACGGAGGGCCGTTCGGTCCCGGACACGCCAGCTTCTTACCGAGCCCCTACGACGACGGCCGCATCTAC
TGCATCTACCACGGGACGGCCAACTACGGCGAAGGTTGGGCTAACCGCAAAGCTCGAGTCTTGAGCCTGGGACCG
GAAATGTTCGCCTCCAACTCTGACCCGATTTGCTGCCACTGTGCGAGCCCGATGAAGTTCAGCAACACGAAGGAC
AAGGTTGAGCAGGTGATGAATAAGGCTTCTCACGCCCACGGGCTGCTCGGAAAGGTTCGGAAGTATTTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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