Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3619
Gene name
Locationscaffold_286:9811..10176
Strand-
Gene length (bp)365
Transcript length (bp)261
Coding sequence length (bp)258
Protein length (aa) 86

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11402 Antifungal_prot Antifungal protein 1.9E-11 36 83

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P17737|AFP_ASPGI Antifungal protein OS=Aspergillus giganteus GN=afp PE=1 SV=2 1 85 7.0E-17
sp|B6GXZ8|AFP_PENRW Antifungal protein OS=Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) GN=afp PE=3 SV=1 2 85 3.0E-09
sp|D0EXD3|AFP_PENCH Antifungal protein OS=Penicillium chrysogenum GN=afp PE=1 SV=1 2 85 9.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.00 0.0 0.00
CcL In ants, during behavior modification 0.00 0.0 0.00
CcD In ants, recently dead 0.46 0.0 1.82

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3619
MVSLYSIAFALLAVSGAVASPAGDSPSLEQRDAAITYNGKCSAKANTCRYVGQSGRPSICKCYVKKCSGDGKACH
YDSYKNQCLCV
Coding >Ophio5|3619
ATGGTCTCCCTTTACTCCATCGCCTTCGCTCTCCTTGCCGTCTCCGGAGCGGTGGCCTCACCTGCTGGCGACTCT
CCGTCCCTTGAGCAGCGCGACGCCGCCATCACCTACAACGGGAAATGCAGCGCCAAAGCGAACACATGCCGTTAT
GTGGGACAAAGCGGTAGGCCCAGCATCTGCAAATGCTACGTCAAGAAGTGCTCTGGTGATGGCAAGGCGTGTCAC
TACGACAGCTACAAGAACCAATGCCTCTGCGTC
Transcript >Ophio5|3619
ATGGTCTCCCTTTACTCCATCGCCTTCGCTCTCCTTGCCGTCTCCGGAGCGGTGGCCTCACCTGCTGGCGACTCT
CCGTCCCTTGAGCAGCGCGACGCCGCCATCACCTACAACGGGAAATGCAGCGCCAAAGCGAACACATGCCGTTAT
GTGGGACAAAGCGGTAGGCCCAGCATCTGCAAATGCTACGTCAAGAAGTGCTCTGGTGATGGCAAGGCGTGTCAC
TACGACAGCTACAAGAACCAATGCCTCTGCGTCTAA
Gene >Ophio5|3619
ATGGTCTCCCTTTACTCCATCGCCTTCGCTCTCCTTGCCGTCTCCGGAGCGGTGGCCTCACCTGCTGGCGACTCT
CCGTCCCTTGAGCAGCGCGACGCCGCCATCACCTACAACGGGGTAGGTACTATCCATCGACTGATCCGGAGCAAC
CAACTGACGATGAACAGAAATGCAGCGCCAAAGCGAACACATGCCGTTATGTGGGACAAAGCGGTAGGCCCAGCA
TCTGCAAATGCTACGTCAAGAAGGTGCGTGCCCATTCATATTGTATAAAACTTCAACTCTCGCTGACAATGGCCA
AGTGCTCTGGTGATGGCAAGGCGTGTCACTACGACAGCTACAAGAACCAATGCCTCTGCGTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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