Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3619
Gene name
Locationscaffold_286:9811..10176
Strand-
Gene length (bp)365
Transcript length (bp)261
Coding sequence length (bp)258
Protein length (aa) 86

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11402 Antifungal_prot Antifungal protein 1.9E-11 36 83

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P17737|AFP_ASPGI Antifungal protein OS=Aspergillus giganteus GN=afp PE=1 SV=2 1 85 7.0E-17
sp|B6GXZ8|AFP_PENRW Antifungal protein OS=Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) GN=afp PE=3 SV=1 2 85 3.0E-09
sp|D0EXD3|AFP_PENCH Antifungal protein OS=Penicillium chrysogenum GN=afp PE=1 SV=1 2 85 9.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3619
MVSLYSIAFALLAVSGAVASPAGDSPSLEQRDAAITYNGKCSAKANTCRYVGQSGRPSICKCYVKKCSGDGKACH
YDSYKNQCLCV
Coding >Ophio5|3619
ATGGTCTCCCTTTACTCCATCGCCTTCGCTCTCCTTGCCGTCTCCGGAGCGGTGGCCTCACCTGCTGGCGACTCT
CCGTCCCTTGAGCAGCGCGACGCCGCCATCACCTACAACGGGAAATGCAGCGCCAAAGCGAACACATGCCGTTAT
GTGGGACAAAGCGGTAGGCCCAGCATCTGCAAATGCTACGTCAAGAAGTGCTCTGGTGATGGCAAGGCGTGTCAC
TACGACAGCTACAAGAACCAATGCCTCTGCGTC
Transcript >Ophio5|3619
ATGGTCTCCCTTTACTCCATCGCCTTCGCTCTCCTTGCCGTCTCCGGAGCGGTGGCCTCACCTGCTGGCGACTCT
CCGTCCCTTGAGCAGCGCGACGCCGCCATCACCTACAACGGGAAATGCAGCGCCAAAGCGAACACATGCCGTTAT
GTGGGACAAAGCGGTAGGCCCAGCATCTGCAAATGCTACGTCAAGAAGTGCTCTGGTGATGGCAAGGCGTGTCAC
TACGACAGCTACAAGAACCAATGCCTCTGCGTCTAA
Gene >Ophio5|3619
ATGGTCTCCCTTTACTCCATCGCCTTCGCTCTCCTTGCCGTCTCCGGAGCGGTGGCCTCACCTGCTGGCGACTCT
CCGTCCCTTGAGCAGCGCGACGCCGCCATCACCTACAACGGGGTAGGTACTATCCATCGACTGATCCGGAGCAAC
CAACTGACGATGAACAGAAATGCAGCGCCAAAGCGAACACATGCCGTTATGTGGGACAAAGCGGTAGGCCCAGCA
TCTGCAAATGCTACGTCAAGAAGGTGCGTGCCCATTCATATTGTATAAAACTTCAACTCTCGCTGACAATGGCCA
AGTGCTCTGGTGATGGCAAGGCGTGTCACTACGACAGCTACAAGAACCAATGCCTCTGCGTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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